Wall clock time and date at job start Mon Mar 8 2021 10:30:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42903 * 1
3 3 Si 1.86297 * 109.47287 * 2 1
4 4 C 1.50698 * 109.47151 * 120.00121 * 2 1 3
5 5 C 1.37981 * 120.32766 * 244.99770 * 4 2 1
6 6 N 1.32008 * 120.90372 * 179.97438 * 5 4 2
7 7 C 1.32337 * 121.64907 * 0.02562 * 6 5 4
8 8 N 1.39139 * 119.72220 * 179.97438 * 7 6 5
9 9 C 1.46499 * 119.99834 * 359.97438 * 8 7 6
10 10 H 1.09004 * 112.91032 * 23.75080 * 9 8 7
11 11 C 1.53784 * 113.61434 * 155.00071 * 9 8 7
12 12 C 1.53787 * 87.07923 * 89.11404 * 11 9 8
13 13 H 1.09000 * 113.61529 * 270.88430 * 12 11 9
14 14 C 1.50697 * 113.60917 * 140.06705 * 12 11 9
15 15 C 1.38234 * 120.00220 * 299.72470 * 14 12 11
16 16 C 1.38234 * 120.00163 * 179.79346 * 15 14 12
17 17 C 1.38232 * 120.00173 * 0.46031 * 16 15 14
18 18 C 1.50701 * 120.00401 * 179.79001 * 17 16 15
19 19 F 1.39902 * 109.46993 * 269.98000 * 18 17 16
20 20 F 1.39904 * 109.46865 * 29.98025 * 18 17 16
21 21 F 1.39895 * 109.47054 * 149.98043 * 18 17 16
22 22 C 1.38238 * 119.99739 * 359.77469 * 17 16 15
23 23 C 1.38235 * 119.99945 * 120.00212 * 14 12 11
24 24 C 1.53779 * 113.61357 * 252.49672 * 9 8 7
25 25 C 1.39352 * 120.56023 * 0.25257 * 7 6 5
26 26 F 1.35092 * 120.47030 * 179.72140 * 25 7 6
27 27 C 1.38448 * 119.05324 * 359.49488 * 25 7 6
28 28 H 0.96703 * 113.99418 * 59.99827 * 1 2 3
29 29 H 1.08999 * 109.46837 * 239.99893 * 2 1 3
30 30 H 1.48492 * 110.00386 * 60.00110 * 3 2 1
31 31 H 1.48502 * 109.99800 * 181.31955 * 3 2 1
32 32 H 1.08001 * 119.55108 * 0.02562 * 5 4 2
33 33 H 0.97000 * 119.99892 * 180.02562 * 8 7 6
34 34 H 1.09004 * 113.61451 * 334.56890 * 11 9 8
35 35 H 1.08994 * 113.61477 * 203.66192 * 11 9 8
36 36 H 1.08002 * 119.99975 * 359.97438 * 15 14 12
37 37 H 1.08007 * 119.99822 * 180.25206 * 16 15 14
38 38 H 1.07997 * 120.00329 * 180.02562 * 22 17 16
39 39 H 1.07998 * 120.00315 * 359.97438 * 23 14 12
40 40 H 1.09006 * 113.61307 * 156.33848 * 24 9 8
41 41 H 1.08999 * 113.69146 * 25.44334 * 24 9 8
42 42 H 1.07997 * 120.75509 * 180.23935 * 27 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0501 1.7564 0.0000
4 6 1.9314 -0.7104 1.2304
5 6 2.6382 -0.0202 2.1937
6 7 3.0831 -0.6310 3.2761
7 6 2.8722 -1.9212 3.4816
8 7 3.3597 -2.5246 4.6366
9 6 4.1035 -1.7321 5.6189
10 1 3.8710 -0.6683 5.5696
11 6 4.0500 -2.3088 7.0435
12 6 5.3006 -3.1247 6.6756
13 1 5.0744 -4.0951 6.2336
14 6 6.3142 -3.2100 7.7875
15 6 6.8863 -2.0569 8.2912
16 6 7.8130 -2.1348 9.3140
17 6 8.1746 -3.3666 9.8267
18 6 9.1883 -3.4520 10.9385
19 9 10.4713 -3.5648 10.3922
20 9 9.1162 -2.2971 11.7249
21 9 8.9184 -4.5731 11.7305
22 6 7.6061 -4.5201 9.3197
23 6 6.6761 -4.4419 8.2998
24 6 5.6115 -2.0328 5.6384
25 6 2.1709 -2.6820 2.5481
26 9 1.9615 -4.0001 2.7570
27 6 1.6877 -2.0666 1.4059
28 1 -0.3932 0.4418 -0.7651
29 1 1.7923 -0.5139 -0.8900
30 1 1.5617 2.4679 1.2084
31 1 3.5347 1.7701 -0.0321
32 1 2.8294 1.0344 2.0607
33 1 3.2078 -3.4701 4.7911
34 1 3.1690 -2.9219 7.2336
35 1 4.2264 -1.5666 7.8220
36 1 6.6072 -1.0948 7.8876
37 1 8.2570 -1.2335 9.7103
38 1 7.8882 -5.4825 9.7204
39 1 6.2322 -5.3431 7.9035
40 1 6.2147 -1.2150 6.0328
41 1 5.9925 -2.4229 4.6946
42 1 1.1373 -2.6291 0.6663
There are 66 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 66
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_27_9705040_17656566.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 10:30:53
Heat of formation + Delta-G solvation = -124.007025 kcal
Electronic energy + Delta-G solvation = -31792.919950 eV
Core-core repulsion = 26626.112128 eV
Total energy + Delta-G solvation = -5166.807822 eV
No. of doubly occupied orbitals = 66
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 369.109 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-51.08668 -49.92611 -48.60690 -48.54734 -41.77500 -41.16481 -39.55841 -37.91690
-35.72660 -33.42726 -32.98094 -32.24285 -31.17722 -27.99267 -26.93166 -26.48394
-25.57081 -24.58728 -24.02749 -22.89904 -22.43022 -20.41633 -19.66190 -19.45153
-19.40297 -19.26091 -18.59704 -18.24788 -18.04947 -17.30765 -16.90085 -16.76305
-16.43314 -16.13918 -15.96751 -15.51204 -15.44025 -15.35037 -15.16683 -15.06446
-15.02547 -14.86927 -14.70641 -14.68975 -14.58644 -14.44802 -14.40109 -14.23769
-13.97662 -13.80512 -13.69875 -13.45628 -12.78196 -12.59194 -12.54071 -12.14522
-12.10055 -12.05397 -11.44309 -11.23354 -10.80157 -10.72061 -10.37998 -10.18856
-10.06245 -8.84284 -5.07165 -0.22331 -0.14084 0.06857 0.14496 1.17429
1.56258 1.69725 1.82190 1.86656 2.30037 2.45633 2.74700 2.98351
3.04305 3.10364 3.26267 3.31370 3.44599 3.46995 3.52955 3.59862
3.67276 3.73477 3.77859 3.78518 3.97041 4.03258 4.14330 4.20962
4.26464 4.41611 4.47751 4.52061 4.56442 4.60099 4.66610 4.74314
4.82468 4.87419 4.92801 4.95870 5.06698 5.07641 5.33468 5.39330
5.62446 5.88660 6.09161 6.53255 6.87333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.547 6.547
2 C -0.060 4.060
3 Si 0.682 3.318
4 C -0.162 4.162
5 C 0.143 3.857
6 N -0.509 5.509
7 C 0.392 3.608
8 N -0.700 5.700
9 C 0.133 3.867
10 H 0.110 0.890
11 C -0.137 4.137
12 C -0.081 4.081
13 H 0.101 0.899
14 C -0.037 4.037
15 C -0.119 4.119
16 C -0.066 4.066
17 C -0.188 4.188
18 C 0.508 3.492
19 F -0.176 7.176
20 F -0.177 7.177
21 F -0.177 7.177
22 C -0.067 4.067
23 C -0.117 4.117
24 C -0.145 4.145
25 C -0.017 4.017
26 F -0.132 7.132
27 C -0.035 4.035
28 H 0.384 0.616
29 H 0.076 0.924
30 H -0.247 1.247
31 H -0.251 1.251
32 H 0.155 0.845
33 H 0.413 0.587
34 H 0.079 0.921
35 H 0.101 0.899
36 H 0.136 0.864
37 H 0.137 0.863
38 H 0.136 0.864
39 H 0.134 0.866
40 H 0.097 0.903
41 H 0.076 0.924
42 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.502 1.998 -5.451 6.322
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.353 6.353
2 C -0.171 4.171
3 Si 0.582 3.418
4 C -0.167 4.167
5 C -0.014 4.014
6 N -0.226 5.226
7 C 0.154 3.846
8 N -0.332 5.332
9 C 0.027 3.973
10 H 0.128 0.872
11 C -0.175 4.175
12 C -0.099 4.099
13 H 0.119 0.881
14 C -0.037 4.037
15 C -0.136 4.136
16 C -0.084 4.084
17 C -0.189 4.189
18 C 0.454 3.546
19 F -0.158 7.158
20 F -0.158 7.158
21 F -0.158 7.158
22 C -0.085 4.085
23 C -0.135 4.135
24 C -0.184 4.184
25 C -0.043 4.043
26 F -0.111 7.111
27 C -0.061 4.061
28 H 0.232 0.768
29 H 0.094 0.906
30 H -0.171 1.171
31 H -0.175 1.175
32 H 0.172 0.828
33 H 0.251 0.749
34 H 0.097 0.903
35 H 0.119 0.881
36 H 0.154 0.846
37 H 0.155 0.845
38 H 0.154 0.846
39 H 0.152 0.848
40 H 0.115 0.885
41 H 0.094 0.906
42 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -1.341 2.814 -3.663 4.809
hybrid contribution -0.239 -1.802 -0.107 1.821
sum -1.580 1.012 -3.770 4.211
Atomic orbital electron populations
1.86499 1.17161 1.81855 1.49813 1.24472 0.85779 1.10290 0.96565
0.95047 0.81012 0.77953 0.87753 1.19938 1.04435 0.93922 0.98381
1.22169 0.92595 0.98942 0.87715 1.67259 1.25011 1.07430 1.22876
1.18366 0.90492 0.88863 0.86917 1.44192 1.58783 1.11758 1.18478
1.21810 0.91154 0.97002 0.87317 0.87179 1.23466 0.97501 0.99831
0.96679 1.21714 0.94300 0.99620 0.94244 0.88090 1.19960 0.95285
0.93107 0.95382 1.21022 0.97067 0.98879 0.96678 1.20965 0.95990
0.96408 0.95066 1.19994 1.01908 0.96632 1.00375 1.18315 0.80693
0.73706 0.81916 1.93241 1.41255 1.95712 1.85552 1.93202 1.96317
1.49930 1.76364 1.93200 1.93706 1.52849 1.76065 1.20978 0.94792
0.97538 0.95152 1.21081 0.97846 0.97850 0.96748 1.23618 0.97100
0.98452 0.99202 1.17964 1.08548 0.79502 0.98311 1.91494 1.93718
1.30931 1.94928 1.21278 0.95192 0.94330 0.95302 0.76829 0.90569
1.17130 1.17550 0.82806 0.74943 0.90272 0.88073 0.84604 0.84529
0.84567 0.84788 0.88487 0.90574 0.83057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.55 0.50 12.82 -35.23 -0.45 0.05 16
2 C -0.06 0.08 2.81 36.00 0.10 0.18 16
3 Si 0.68 -1.58 29.88 -169.99 -5.08 -6.66 16
4 C -0.16 -0.22 5.39 -104.47 -0.56 -0.78 16
5 C 0.14 0.31 9.83 -17.57 -0.17 0.13 16
6 N -0.51 -1.47 9.13 -12.36 -0.11 -1.58 16
7 C 0.39 0.84 7.49 -154.86 -1.16 -0.32 16
8 N -0.70 0.05 5.41 -53.06 -0.29 -0.24 16
9 C 0.13 -0.15 4.35 -67.12 -0.29 -0.44 16
10 H 0.11 0.00 7.41 -51.93 -0.38 -0.38 16
11 C -0.14 0.33 7.29 -25.91 -0.19 0.15 16
12 C -0.08 0.19 3.85 -90.96 -0.35 -0.16 16
13 H 0.10 -0.29 8.09 -51.93 -0.42 -0.71 16
14 C -0.04 0.04 5.29 -104.63 -0.55 -0.51 16
15 C -0.12 0.14 8.63 -39.58 -0.34 -0.20 16
16 C -0.07 0.01 9.40 -39.59 -0.37 -0.36 16
17 C -0.19 -0.17 5.45 -104.62 -0.57 -0.74 16
18 C 0.51 1.00 3.36 36.01 0.12 1.12 16
19 F -0.18 -0.51 17.30 2.25 0.04 -0.47 16
20 F -0.18 -0.44 16.46 2.25 0.04 -0.40 16
21 F -0.18 -0.44 16.46 2.25 0.04 -0.41 16
22 C -0.07 0.00 9.40 -39.58 -0.37 -0.37 16
23 C -0.12 0.11 9.71 -39.58 -0.38 -0.28 16
24 C -0.14 0.25 7.25 -25.92 -0.19 0.07 16
25 C -0.02 -0.04 7.35 -39.09 -0.29 -0.32 16
26 F -0.13 -0.29 16.65 2.25 0.04 -0.25 16
27 C -0.03 -0.05 9.82 -39.26 -0.39 -0.44 16
28 H 0.38 -2.26 8.74 45.56 0.40 -1.87 16
29 H 0.08 -0.23 7.96 -51.93 -0.41 -0.65 16
30 H -0.25 -0.17 7.05 56.52 0.40 0.23 16
31 H -0.25 -0.01 7.11 56.52 0.40 0.39 16
32 H 0.16 0.16 4.87 -52.49 -0.26 -0.09 16
33 H 0.41 -0.54 8.17 -40.82 -0.33 -0.87 16
34 H 0.08 -0.19 8.14 -51.93 -0.42 -0.61 16
35 H 0.10 -0.28 7.73 -51.93 -0.40 -0.69 16
36 H 0.14 -0.40 6.65 -52.49 -0.35 -0.75 16
37 H 0.14 -0.18 7.60 -52.48 -0.40 -0.57 16
38 H 0.14 -0.15 7.60 -52.49 -0.40 -0.55 16
39 H 0.13 -0.36 8.05 -52.49 -0.42 -0.79 16
40 H 0.10 -0.23 6.31 -51.93 -0.33 -0.56 16
41 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16
42 H 0.15 -0.01 8.06 -52.49 -0.42 -0.43 16
LS Contribution 368.50 15.07 5.55 5.55
Total: 0.00 -6.71 368.50 -10.36 -17.07
By element:
Atomic # 1 Polarization: -5.19 SS G_CDS: -4.18 Total: -9.37 kcal
Atomic # 6 Polarization: 2.67 SS G_CDS: -5.96 Total: -3.29 kcal
Atomic # 7 Polarization: -1.42 SS G_CDS: -0.40 Total: -1.82 kcal
Atomic # 8 Polarization: 0.50 SS G_CDS: -0.45 Total: 0.05 kcal
Atomic # 9 Polarization: -1.68 SS G_CDS: 0.15 Total: -1.53 kcal
Atomic # 14 Polarization: -1.58 SS G_CDS: -5.08 Total: -6.66 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -6.71 -10.36 -17.07 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9705040_17656566.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.938 kcal
(2) G-P(sol) polarization free energy of solvation -6.706 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.644 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.069 kcal
(6) G-S(sol) free energy of system = (1) + (5) -124.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds