Wall clock time and date at job start Mon Mar 8 2021 10:30:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42903 * 1
3 3 Si 1.86297 * 109.47287 * 2 1
4 4 C 1.50698 * 109.47151 * 120.00121 * 2 1 3
5 5 C 1.37981 * 120.32766 * 244.99770 * 4 2 1
6 6 N 1.32008 * 120.90372 * 179.97438 * 5 4 2
7 7 C 1.32337 * 121.64907 * 0.02562 * 6 5 4
8 8 N 1.39139 * 119.72220 * 179.97438 * 7 6 5
9 9 C 1.46499 * 119.99834 * 359.97438 * 8 7 6
10 10 H 1.09004 * 112.91032 * 23.75080 * 9 8 7
11 11 C 1.53784 * 113.61434 * 155.00071 * 9 8 7
12 12 C 1.53787 * 87.07923 * 89.11404 * 11 9 8
13 13 H 1.09000 * 113.61529 * 270.88430 * 12 11 9
14 14 C 1.50697 * 113.60917 * 140.06705 * 12 11 9
15 15 C 1.38234 * 120.00220 * 299.72470 * 14 12 11
16 16 C 1.38234 * 120.00163 * 179.79346 * 15 14 12
17 17 C 1.38232 * 120.00173 * 0.46031 * 16 15 14
18 18 C 1.50701 * 120.00401 * 179.79001 * 17 16 15
19 19 F 1.39902 * 109.46993 * 269.98000 * 18 17 16
20 20 F 1.39904 * 109.46865 * 29.98025 * 18 17 16
21 21 F 1.39895 * 109.47054 * 149.98043 * 18 17 16
22 22 C 1.38238 * 119.99739 * 359.77469 * 17 16 15
23 23 C 1.38235 * 119.99945 * 120.00212 * 14 12 11
24 24 C 1.53779 * 113.61357 * 252.49672 * 9 8 7
25 25 C 1.39352 * 120.56023 * 0.25257 * 7 6 5
26 26 F 1.35092 * 120.47030 * 179.72140 * 25 7 6
27 27 C 1.38448 * 119.05324 * 359.49488 * 25 7 6
28 28 H 0.96703 * 113.99418 * 59.99827 * 1 2 3
29 29 H 1.08999 * 109.46837 * 239.99893 * 2 1 3
30 30 H 1.48492 * 110.00386 * 60.00110 * 3 2 1
31 31 H 1.48502 * 109.99800 * 181.31955 * 3 2 1
32 32 H 1.08001 * 119.55108 * 0.02562 * 5 4 2
33 33 H 0.97000 * 119.99892 * 180.02562 * 8 7 6
34 34 H 1.09004 * 113.61451 * 334.56890 * 11 9 8
35 35 H 1.08994 * 113.61477 * 203.66192 * 11 9 8
36 36 H 1.08002 * 119.99975 * 359.97438 * 15 14 12
37 37 H 1.08007 * 119.99822 * 180.25206 * 16 15 14
38 38 H 1.07997 * 120.00329 * 180.02562 * 22 17 16
39 39 H 1.07998 * 120.00315 * 359.97438 * 23 14 12
40 40 H 1.09006 * 113.61307 * 156.33848 * 24 9 8
41 41 H 1.08999 * 113.69146 * 25.44334 * 24 9 8
42 42 H 1.07997 * 120.75509 * 180.23935 * 27 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0501 1.7564 0.0000
4 6 1.9314 -0.7104 1.2304
5 6 2.6382 -0.0202 2.1937
6 7 3.0831 -0.6310 3.2761
7 6 2.8722 -1.9212 3.4816
8 7 3.3597 -2.5246 4.6366
9 6 4.1035 -1.7321 5.6189
10 1 3.8710 -0.6683 5.5696
11 6 4.0500 -2.3088 7.0435
12 6 5.3006 -3.1247 6.6756
13 1 5.0744 -4.0951 6.2336
14 6 6.3142 -3.2100 7.7875
15 6 6.8863 -2.0569 8.2912
16 6 7.8130 -2.1348 9.3140
17 6 8.1746 -3.3666 9.8267
18 6 9.1883 -3.4520 10.9385
19 9 10.4713 -3.5648 10.3922
20 9 9.1162 -2.2971 11.7249
21 9 8.9184 -4.5731 11.7305
22 6 7.6061 -4.5201 9.3197
23 6 6.6761 -4.4419 8.2998
24 6 5.6115 -2.0328 5.6384
25 6 2.1709 -2.6820 2.5481
26 9 1.9615 -4.0001 2.7570
27 6 1.6877 -2.0666 1.4059
28 1 -0.3932 0.4418 -0.7651
29 1 1.7923 -0.5139 -0.8900
30 1 1.5617 2.4679 1.2084
31 1 3.5347 1.7701 -0.0321
32 1 2.8294 1.0344 2.0607
33 1 3.2078 -3.4701 4.7911
34 1 3.1690 -2.9219 7.2336
35 1 4.2264 -1.5666 7.8220
36 1 6.6072 -1.0948 7.8876
37 1 8.2570 -1.2335 9.7103
38 1 7.8882 -5.4825 9.7204
39 1 6.2322 -5.3431 7.9035
40 1 6.2147 -1.2150 6.0328
41 1 5.9925 -2.4229 4.6946
42 1 1.1373 -2.6291 0.6663
There are 66 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 66
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_27_9705040_17656566.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 10:30:52
Heat of formation + Delta-G solvation = -117.689284 kcal
Electronic energy + Delta-G solvation = -31792.645992 eV
Core-core repulsion = 26626.112128 eV
Total energy + Delta-G solvation = -5166.533864 eV
No. of doubly occupied orbitals = 66
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 369.109 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-51.25999 -50.05951 -48.78309 -48.73602 -41.75939 -41.14950 -39.48934 -37.80889
-35.70921 -33.47166 -32.98717 -32.16055 -31.18977 -27.99392 -26.79866 -26.45424
-25.62312 -24.59319 -23.97052 -22.93256 -22.40768 -20.34452 -19.69156 -19.58863
-19.50618 -19.39432 -18.53178 -18.24928 -18.10201 -17.26790 -17.00843 -16.68730
-16.42060 -16.11938 -15.92730 -15.58210 -15.48757 -15.46730 -15.19749 -15.18574
-15.04374 -14.98688 -14.89781 -14.70470 -14.59431 -14.41454 -14.39988 -14.18485
-14.00522 -13.82652 -13.58011 -13.37440 -12.79899 -12.54210 -12.43322 -12.13246
-12.03236 -11.93209 -11.34705 -11.19397 -10.89080 -10.80969 -10.24690 -10.11049
-9.99517 -8.88311 -4.91291 -0.25761 -0.17821 -0.00963 0.22616 1.32282
1.58640 1.69494 1.82626 1.99209 2.35378 2.37736 2.65315 2.89620
2.93656 3.06642 3.32376 3.33429 3.40436 3.57532 3.62395 3.64593
3.74950 3.78337 3.83974 3.90843 4.03847 4.14524 4.26214 4.29339
4.34115 4.38756 4.58377 4.60039 4.62974 4.72038 4.77178 4.84301
4.89015 4.96248 4.98577 5.07003 5.13962 5.15602 5.32751 5.49375
5.72351 5.88830 6.07459 6.81746 6.94809
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.565 6.565
2 C -0.065 4.065
3 Si 0.771 3.229
4 C -0.171 4.171
5 C 0.128 3.872
6 N -0.527 5.527
7 C 0.382 3.618
8 N -0.694 5.694
9 C 0.129 3.871
10 H 0.098 0.902
11 C -0.127 4.127
12 C -0.072 4.072
13 H 0.109 0.891
14 C -0.038 4.038
15 C -0.119 4.119
16 C -0.076 4.076
17 C -0.202 4.202
18 C 0.507 3.493
19 F -0.184 7.184
20 F -0.181 7.181
21 F -0.182 7.182
22 C -0.077 4.077
23 C -0.120 4.120
24 C -0.141 4.141
25 C -0.029 4.029
26 F -0.134 7.134
27 C -0.038 4.038
28 H 0.405 0.595
29 H 0.100 0.900
30 H -0.292 1.292
31 H -0.284 1.284
32 H 0.157 0.843
33 H 0.418 0.582
34 H 0.082 0.918
35 H 0.108 0.892
36 H 0.153 0.847
37 H 0.144 0.856
38 H 0.142 0.858
39 H 0.152 0.848
40 H 0.104 0.896
41 H 0.064 0.936
42 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.226 1.835 -6.418 7.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.376 6.376
2 C -0.176 4.176
3 Si 0.676 3.324
4 C -0.176 4.176
5 C -0.029 4.029
6 N -0.244 5.244
7 C 0.144 3.856
8 N -0.327 5.327
9 C 0.023 3.977
10 H 0.116 0.884
11 C -0.165 4.165
12 C -0.090 4.090
13 H 0.127 0.873
14 C -0.038 4.038
15 C -0.137 4.137
16 C -0.094 4.094
17 C -0.204 4.204
18 C 0.453 3.547
19 F -0.166 7.166
20 F -0.163 7.163
21 F -0.163 7.163
22 C -0.095 4.095
23 C -0.138 4.138
24 C -0.180 4.180
25 C -0.055 4.055
26 F -0.113 7.113
27 C -0.064 4.064
28 H 0.257 0.743
29 H 0.118 0.882
30 H -0.219 1.219
31 H -0.211 1.211
32 H 0.174 0.826
33 H 0.257 0.743
34 H 0.100 0.900
35 H 0.126 0.874
36 H 0.171 0.829
37 H 0.161 0.839
38 H 0.160 0.840
39 H 0.170 0.830
40 H 0.122 0.878
41 H 0.083 0.917
42 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -2.080 2.636 -4.652 5.737
hybrid contribution -0.015 -1.719 0.215 1.732
sum -2.095 0.917 -4.437 4.991
Atomic orbital electron populations
1.86445 1.17139 1.82450 1.51536 1.24608 0.85942 1.10837 0.96180
0.94122 0.77647 0.75429 0.85174 1.20260 1.04046 0.94111 0.99146
1.22371 0.93141 0.99293 0.88092 1.67247 1.25746 1.07924 1.23457
1.18527 0.90715 0.88801 0.87598 1.44248 1.58423 1.12062 1.17989
1.21848 0.91510 0.96376 0.87933 0.88423 1.23424 0.97514 0.99791
0.95777 1.21678 0.93902 0.99844 0.93592 0.87288 1.20118 0.95243
0.93071 0.95403 1.21242 0.96510 0.99779 0.96174 1.21137 0.96401
0.96355 0.95467 1.20037 1.02272 0.97512 1.00546 1.18498 0.80722
0.73343 0.82161 1.93219 1.41960 1.95737 1.85638 1.93185 1.96333
1.50178 1.76590 1.93182 1.93714 1.53124 1.76302 1.21144 0.95139
0.97589 0.95585 1.21325 0.97436 0.98737 0.96309 1.23594 0.96562
0.98892 0.98911 1.18100 1.09119 0.79491 0.98836 1.91480 1.93792
1.31048 1.94997 1.21512 0.94964 0.94542 0.95357 0.74334 0.88238
1.21941 1.21134 0.82611 0.74295 0.89956 0.87407 0.82926 0.83865
0.83972 0.83029 0.87761 0.91681 0.81631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.57 1.62 12.82 -148.98 -1.91 -0.29 16
2 C -0.07 0.22 2.81 71.24 0.20 0.42 16
3 Si 0.77 -3.58 29.88 68.60 2.05 -1.53 16
4 C -0.17 -0.50 5.39 -19.77 -0.11 -0.60 16
5 C 0.13 0.68 9.83 84.61 0.83 1.51 16
6 N -0.53 -3.63 9.13 -193.03 -1.76 -5.40 16
7 C 0.38 1.92 7.49 133.09 1.00 2.92 16
8 N -0.69 -0.14 5.41 -321.78 -1.74 -1.88 16
9 C 0.13 -0.28 4.35 45.52 0.20 -0.08 16
10 H 0.10 0.07 7.41 -2.39 -0.02 0.05 16
11 C -0.13 0.71 7.29 31.12 0.23 0.94 16
12 C -0.07 0.40 3.85 -11.01 -0.04 0.35 16
13 H 0.11 -0.74 8.09 -2.39 -0.02 -0.76 16
14 C -0.04 0.12 5.29 -19.87 -0.11 0.02 16
15 C -0.12 0.34 8.63 22.27 0.19 0.54 16
16 C -0.08 0.01 9.40 22.27 0.21 0.22 16
17 C -0.20 -0.46 5.45 -19.87 -0.11 -0.57 16
18 C 0.51 2.44 3.36 71.24 0.24 2.68 16
19 F -0.18 -1.24 17.30 44.97 0.78 -0.46 16
20 F -0.18 -1.05 16.46 44.97 0.74 -0.31 16
21 F -0.18 -1.07 16.46 44.97 0.74 -0.33 16
22 C -0.08 -0.01 9.40 22.27 0.21 0.20 16
23 C -0.12 0.30 9.71 22.27 0.22 0.52 16
24 C -0.14 0.52 7.25 31.12 0.23 0.75 16
25 C -0.03 -0.14 7.35 22.59 0.17 0.03 16
26 F -0.13 -0.63 16.65 44.97 0.75 0.12 16
27 C -0.04 -0.11 9.82 22.48 0.22 0.11 16
28 H 0.41 -5.40 8.74 -74.06 -0.65 -6.05 16
29 H 0.10 -0.78 7.96 -2.39 -0.02 -0.80 16
30 H -0.29 -0.78 7.05 99.48 0.70 -0.08 16
31 H -0.28 -0.21 7.11 99.48 0.71 0.50 16
32 H 0.16 0.56 4.87 -2.91 -0.01 0.54 16
33 H 0.42 -1.07 8.17 -92.71 -0.76 -1.83 16
34 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16
35 H 0.11 -0.71 7.73 -2.39 -0.02 -0.73 16
36 H 0.15 -1.04 6.65 -2.91 -0.02 -1.06 16
37 H 0.14 -0.33 7.60 -2.91 -0.02 -0.35 16
38 H 0.14 -0.27 7.60 -2.91 -0.02 -0.29 16
39 H 0.15 -1.00 8.05 -2.91 -0.02 -1.03 16
40 H 0.10 -0.55 6.31 -2.38 -0.02 -0.56 16
41 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16
42 H 0.17 -0.12 8.06 -2.91 -0.02 -0.14 16
Total: 0.00 -16.46 368.50 3.16 -13.30
By element:
Atomic # 1 Polarization: -12.91 SS G_CDS: -0.25 Total: -13.16 kcal
Atomic # 6 Polarization: 6.17 SS G_CDS: 3.77 Total: 9.94 kcal
Atomic # 7 Polarization: -3.78 SS G_CDS: -3.50 Total: -7.28 kcal
Atomic # 8 Polarization: 1.62 SS G_CDS: -1.91 Total: -0.29 kcal
Atomic # 9 Polarization: -3.98 SS G_CDS: 3.01 Total: -0.98 kcal
Atomic # 14 Polarization: -3.58 SS G_CDS: 2.05 Total: -1.53 kcal
Total: -16.46 3.16 -13.30 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9705040_17656566.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -104.390 kcal
(2) G-P(sol) polarization free energy of solvation -16.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.853 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.300 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.689 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds