Wall clock time and date at job start Mon Mar 8 2021 10:30:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42902 * 1
3 3 Si 1.86299 * 109.47064 * 2 1
4 4 C 1.50700 * 109.46808 * 119.99869 * 2 1 3
5 5 C 1.38601 * 120.72046 * 65.00398 * 4 2 1
6 6 N 1.32269 * 119.19933 * 179.97438 * 5 4 2
7 7 C 1.32503 * 120.73847 * 359.97438 * 6 5 4
8 8 N 1.38408 * 119.21616 * 180.02562 * 7 6 5
9 9 C 1.46496 * 119.99921 * 180.02562 * 8 7 6
10 10 H 1.09005 * 112.85035 * 336.19307 * 9 8 7
11 11 C 1.53777 * 113.69343 * 107.46294 * 9 8 7
12 12 C 1.53784 * 87.08365 * 89.12697 * 11 9 8
13 13 H 1.08995 * 113.68826 * 270.87930 * 12 11 9
14 14 C 1.50694 * 113.61520 * 139.97986 * 12 11 9
15 15 C 1.38445 * 120.00973 * 142.50410 * 14 12 11
16 16 F 1.35093 * 120.02545 * 359.70522 * 15 14 12
17 17 C 1.38485 * 119.94716 * 179.97438 * 15 14 12
18 18 C 1.38176 * 119.97176 * 0.02601 * 17 15 14
19 19 C 1.38263 * 120.02823 * 359.97438 * 18 17 15
20 20 C 1.38218 * 120.01395 * 322.48162 * 14 12 11
21 21 C 1.53787 * 113.61218 * 205.00137 * 9 8 7
22 22 N 1.32492 * 121.56290 * 0.27096 * 7 6 5
23 23 C 1.32273 * 120.74370 * 359.44956 * 22 7 6
24 24 H 0.96698 * 114.00211 * 299.99907 * 1 2 3
25 25 H 1.08998 * 109.47253 * 240.00198 * 2 1 3
26 26 H 1.48505 * 110.00071 * 300.00271 * 3 2 1
27 27 H 1.48510 * 110.00048 * 61.31835 * 3 2 1
28 28 H 1.08001 * 120.40165 * 359.97438 * 5 4 2
29 29 H 0.96998 * 120.00105 * 0.02562 * 8 7 6
30 30 H 1.09000 * 113.61220 * 334.58262 * 11 9 8
31 31 H 1.08995 * 113.61317 * 203.67682 * 11 9 8
32 32 H 1.08000 * 120.00922 * 179.97438 * 17 15 14
33 33 H 1.08006 * 119.98186 * 179.97438 * 18 17 15
34 34 H 1.08006 * 119.97611 * 180.02562 * 19 18 17
35 35 H 1.07992 * 119.98884 * 0.02673 * 20 14 12
36 36 H 1.09004 * 113.61054 * 156.25102 * 21 9 8
37 37 H 1.08994 * 113.61607 * 25.34448 * 21 9 8
38 38 H 1.07995 * 120.40415 * 180.24465 * 23 22 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7565 0.0000
4 6 1.9313 -0.7104 1.2305
5 6 1.6926 -2.0633 1.4140
6 7 2.1477 -2.6567 2.5050
7 6 2.8248 -1.9726 3.4157
8 7 3.2870 -2.6253 4.5453
9 6 4.0371 -1.8856 5.5633
10 1 4.5175 -0.9905 5.1680
11 6 3.2440 -1.6386 6.8574
12 6 3.7915 -2.9861 7.3571
13 1 3.1660 -3.8384 7.0918
14 6 4.1814 -2.9768 8.8127
15 6 3.9469 -4.0916 9.5994
16 9 3.3630 -5.1860 9.0643
17 6 4.3063 -4.0819 10.9368
18 6 4.8979 -2.9597 11.4845
19 6 5.1316 -1.8469 10.6977
20 6 4.7738 -1.8556 9.3626
21 6 4.9761 -2.7700 6.4005
22 7 3.0658 -0.6777 3.2728
23 6 2.6434 -0.0253 2.2025
24 1 -0.3933 0.4417 0.7650
25 1 1.7924 -0.5138 -0.8900
26 1 1.5614 2.4679 -1.2085
27 1 1.5878 2.4586 1.2243
28 1 1.1416 -2.6262 0.6751
29 1 3.1143 -3.5725 4.6629
30 1 2.1636 -1.6329 6.7130
31 1 3.6000 -0.7830 7.4311
32 1 4.1235 -4.9508 11.5516
33 1 5.1779 -2.9517 12.5276
34 1 5.5945 -0.9704 11.1266
35 1 4.9567 -0.9859 8.7491
36 1 5.8056 -2.2236 6.8493
37 1 5.2940 -3.6775 5.8873
38 1 2.8463 1.0294 2.0898
There are 54 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 54
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_27_9705096_12175864.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 10:30:56
Heat of formation + Delta-G solvation = 47.272937 kcal
Electronic energy + Delta-G solvation = -23316.426116 eV
Core-core repulsion = 19655.519186 eV
Total energy + Delta-G solvation = -3660.906930 eV
No. of doubly occupied orbitals = 54
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 302.117 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-49.94630 -42.17819 -41.05444 -39.20233 -38.09146 -35.58578 -34.74846 -32.62296
-31.49189 -31.28348 -27.00535 -26.75502 -26.14616 -25.57784 -23.81727 -23.24744
-22.60787 -20.32645 -19.63671 -18.73300 -18.50600 -18.08487 -17.44170 -16.96248
-16.67586 -16.55380 -16.37904 -16.10760 -15.84305 -15.73748 -15.18613 -15.05577
-14.78802 -14.54921 -14.18487 -14.01456 -13.97807 -13.50147 -13.20953 -13.12672
-12.96906 -12.37552 -12.26730 -11.99675 -11.92876 -11.88665 -11.72434 -11.30449
-11.13589 -10.69483 -10.05924 -9.89458 -9.59057 -9.13842 -4.89629 0.02794
0.12552 0.17504 0.24199 1.32691 1.61312 1.75591 1.99372 2.60122
2.75593 3.12628 3.27224 3.42854 3.43494 3.56639 3.63005 3.66869
3.71358 3.78487 3.83230 3.93212 4.09029 4.17744 4.21759 4.36692
4.38225 4.61042 4.64905 4.72739 4.73649 4.80896 4.91371 4.95752
4.98889 5.08365 5.10982 5.25046 5.32314 5.45109 5.48464 5.78059
5.94845 6.01435 6.36231 6.49347 7.24001
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.548 6.548
2 C -0.058 4.058
3 Si 0.762 3.238
4 C -0.283 4.283
5 C 0.212 3.788
6 N -0.593 5.593
7 C 0.555 3.445
8 N -0.677 5.677
9 C 0.139 3.861
10 H 0.112 0.888
11 C -0.135 4.135
12 C -0.077 4.077
13 H 0.085 0.915
14 C -0.111 4.111
15 C 0.067 3.933
16 F -0.154 7.154
17 C -0.165 4.165
18 C -0.100 4.100
19 C -0.126 4.126
20 C -0.092 4.092
21 C -0.124 4.124
22 N -0.572 5.572
23 C 0.193 3.807
24 H 0.385 0.615
25 H 0.131 0.869
26 H -0.300 1.300
27 H -0.277 1.277
28 H 0.182 0.818
29 H 0.415 0.585
30 H 0.057 0.943
31 H 0.113 0.887
32 H 0.139 0.861
33 H 0.153 0.847
34 H 0.155 0.845
35 H 0.156 0.844
36 H 0.116 0.884
37 H 0.075 0.925
38 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.441 3.920 1.642 6.147
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.355 6.355
2 C -0.169 4.169
3 Si 0.667 3.333
4 C -0.291 4.291
5 C 0.045 3.955
6 N -0.315 5.315
7 C 0.199 3.801
8 N -0.313 5.313
9 C 0.033 3.967
10 H 0.130 0.870
11 C -0.174 4.174
12 C -0.096 4.096
13 H 0.104 0.896
14 C -0.112 4.112
15 C 0.048 3.952
16 F -0.133 7.133
17 C -0.183 4.183
18 C -0.118 4.118
19 C -0.144 4.144
20 C -0.110 4.110
21 C -0.162 4.162
22 N -0.295 5.295
23 C 0.026 3.974
24 H 0.234 0.766
25 H 0.149 0.851
26 H -0.228 1.228
27 H -0.204 1.204
28 H 0.199 0.801
29 H 0.253 0.747
30 H 0.076 0.924
31 H 0.132 0.868
32 H 0.157 0.843
33 H 0.170 0.830
34 H 0.172 0.828
35 H 0.174 0.826
36 H 0.135 0.865
37 H 0.094 0.906
38 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 4.746 3.992 2.065 6.536
hybrid contribution -1.968 -0.845 -0.197 2.151
sum 2.778 3.147 1.868 4.595
Atomic orbital electron populations
1.86591 1.18580 1.80274 1.50103 1.24896 0.83171 1.11404 0.97385
0.94231 0.90116 0.71998 0.76915 1.21698 1.08509 0.97216 1.01697
1.23155 0.89160 0.91787 0.91392 1.67991 1.17390 1.40861 1.05284
1.19583 0.87378 0.85971 0.87214 1.43937 1.58012 1.11921 1.17403
1.21851 0.92406 0.96027 0.86426 0.86977 1.23591 1.00193 0.97044
0.96593 1.21498 0.98881 0.99357 0.89816 0.89647 1.19912 1.01682
0.93538 0.96033 1.17985 0.99905 0.84182 0.93139 1.91442 1.82261
1.52830 1.86794 1.21408 1.02124 1.01444 0.93350 1.21376 0.96893
0.92027 1.01482 1.21615 0.99602 0.99382 0.93810 1.21221 0.96574
0.97367 0.95810 1.23436 0.96600 1.00677 0.95485 1.67958 1.27658
1.08042 1.25843 1.23250 0.87716 1.00359 0.86080 0.76581 0.85117
1.22830 1.20369 0.80093 0.74672 0.92376 0.86843 0.84274 0.82972
0.82768 0.82645 0.86534 0.90601 0.79502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.55 -0.11 12.85 -148.98 -1.91 -2.03 16
2 C -0.06 0.19 2.83 71.24 0.20 0.39 16
3 Si 0.76 -3.52 29.95 68.60 2.05 -1.47 16
4 C -0.28 0.21 5.36 -19.69 -0.11 0.10 16
5 C 0.21 0.50 10.99 84.71 0.93 1.43 16
6 N -0.59 -3.86 10.46 -197.99 -2.07 -5.93 16
7 C 0.56 3.13 8.43 261.48 2.20 5.33 16
8 N -0.68 -1.43 5.42 -327.92 -1.78 -3.20 16
9 C 0.14 -0.21 4.33 45.52 0.20 -0.01 16
10 H 0.11 -0.13 7.37 -2.38 -0.02 -0.14 16
11 C -0.14 0.24 7.26 31.12 0.23 0.47 16
12 C -0.08 0.03 3.78 -11.01 -0.04 -0.01 16
13 H 0.09 0.21 7.45 -2.39 -0.02 0.19 16
14 C -0.11 -0.14 5.29 -19.82 -0.10 -0.24 16
15 C 0.07 0.33 7.25 22.38 0.16 0.49 16
16 F -0.15 -1.31 16.36 44.97 0.74 -0.58 16
17 C -0.16 -0.32 10.03 22.31 0.22 -0.10 16
18 C -0.10 0.19 10.04 22.26 0.22 0.42 16
19 C -0.13 0.46 10.04 22.27 0.22 0.68 16
20 C -0.09 0.26 8.61 22.26 0.19 0.46 16
21 C -0.12 0.42 7.29 31.13 0.23 0.64 16
22 N -0.57 -2.34 9.13 -197.98 -1.81 -4.15 16
23 C 0.19 -0.03 9.92 84.71 0.84 0.81 16
24 H 0.39 -1.84 8.70 -74.06 -0.64 -2.48 16
25 H 0.13 -0.71 7.96 -2.39 -0.02 -0.73 16
26 H -0.30 -1.05 7.11 99.48 0.71 -0.34 16
27 H -0.28 0.36 7.03 99.48 0.70 1.06 16
28 H 0.18 -0.22 8.06 -2.91 -0.02 -0.25 16
29 H 0.42 0.55 8.82 -92.71 -0.82 -0.27 16
30 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16
31 H 0.11 -0.58 6.31 -2.39 -0.02 -0.60 16
32 H 0.14 -0.02 8.06 -2.91 -0.02 -0.04 16
33 H 0.15 -1.00 8.06 -2.91 -0.02 -1.02 16
34 H 0.15 -1.33 8.06 -2.91 -0.02 -1.35 16
35 H 0.16 -1.22 6.66 -2.91 -0.02 -1.24 16
36 H 0.12 -0.72 7.72 -2.38 -0.02 -0.74 16
37 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16
38 H 0.19 -1.04 5.01 -2.91 -0.01 -1.06 16
Total: 0.00 -16.14 324.26 0.51 -15.63
By element:
Atomic # 1 Polarization: -8.83 SS G_CDS: -0.31 Total: -9.14 kcal
Atomic # 6 Polarization: 5.26 SS G_CDS: 5.60 Total: 10.86 kcal
Atomic # 7 Polarization: -7.63 SS G_CDS: -5.65 Total: -13.28 kcal
Atomic # 8 Polarization: -0.11 SS G_CDS: -1.91 Total: -2.03 kcal
Atomic # 9 Polarization: -1.31 SS G_CDS: 0.74 Total: -0.58 kcal
Atomic # 14 Polarization: -3.52 SS G_CDS: 2.05 Total: -1.47 kcal
Total: -16.14 0.51 -15.63 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9705096_12175864.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.899 kcal
(2) G-P(sol) polarization free energy of solvation -16.137 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.627 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.273 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds