Wall clock time and date at job start Mon Mar 8 2021 10:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33325 * 125.94863 * 2 1 4 4 C 1.50698 * 122.71228 * 0.02562 * 3 2 1 5 5 O 1.42907 * 109.47018 * 329.99728 * 4 3 2 6 6 Si 1.86302 * 109.47193 * 209.99777 * 4 3 2 7 7 N 1.32116 * 114.57865 * 179.74750 * 3 2 1 8 8 C 1.29689 * 116.86998 * 0.47718 * 7 3 2 9 9 N 1.38599 * 124.95496 * 179.80916 * 8 7 3 10 10 C 1.46503 * 120.00188 * 179.72272 * 9 8 7 11 11 H 1.09004 * 112.84935 * 336.19328 * 10 9 8 12 12 C 1.53776 * 113.69317 * 107.46749 * 10 9 8 13 13 C 1.53775 * 87.08380 * 89.12498 * 12 10 9 14 14 H 1.08996 * 113.69638 * 270.87247 * 13 12 10 15 15 C 1.50706 * 113.61422 * 139.97826 * 13 12 10 16 16 C 1.38438 * 120.00944 * 142.22779 * 15 13 12 17 17 F 1.35093 * 120.02843 * 0.02562 * 16 15 13 18 18 C 1.38485 * 119.94501 * 179.72929 * 16 15 13 19 19 C 1.38175 * 119.97134 * 0.57327 * 18 16 15 20 20 C 1.38265 * 120.03126 * 359.69976 * 19 18 16 21 21 C 1.38220 * 120.01305 * 322.50782 * 15 13 12 22 22 C 1.53781 * 87.08212 * 25.43316 * 13 12 10 23 23 S 1.70966 * 110.09581 * 359.54651 * 8 7 3 24 24 H 1.09002 * 109.46823 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47722 * 300.02533 * 1 2 3 26 26 H 1.08999 * 109.47247 * 60.02634 * 1 2 3 27 27 H 1.08998 * 109.47917 * 89.99606 * 4 3 2 28 28 H 0.96701 * 113.99858 * 180.02562 * 5 4 3 29 29 H 1.48496 * 109.99837 * 298.67628 * 6 4 3 30 30 H 1.48501 * 109.99825 * 59.99583 * 6 4 3 31 31 H 0.97003 * 120.00226 * 359.72086 * 9 8 7 32 32 H 1.09007 * 113.61205 * 334.57461 * 12 10 9 33 33 H 1.08996 * 113.61321 * 203.67871 * 12 10 9 34 34 H 1.08000 * 120.01246 * 180.29078 * 18 16 15 35 35 H 1.08002 * 119.98485 * 179.72742 * 19 18 16 36 36 H 1.08002 * 119.97799 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.98607 * 359.97438 * 21 15 13 38 38 H 1.09003 * 113.61408 * 89.11340 * 22 13 12 39 39 H 1.08996 * 113.61907 * 220.01712 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.4809 2.5023 -0.6727 6 14 2.9319 3.6152 -0.8777 7 7 3.5849 0.8189 0.0053 8 6 3.9315 -0.4308 0.0001 9 7 5.2384 -0.8924 0.0006 10 6 5.5066 -2.3327 0.0005 11 1 4.6804 -2.9171 0.4056 12 6 6.0357 -2.8626 -1.3426 13 6 7.4475 -2.5460 -0.8217 14 1 7.7806 -1.5330 -1.0473 15 6 8.4717 -3.5920 -1.1794 16 6 9.7594 -3.2130 -1.5180 17 9 10.0989 -1.9054 -1.5274 18 6 10.7010 -4.1757 -1.8410 19 6 10.3511 -5.5124 -1.8366 20 6 9.0632 -5.8894 -1.5038 21 6 8.1241 -4.9298 -1.1752 22 6 6.8746 -2.7046 0.5965 23 16 2.5413 -1.4260 0.0000 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5142 0.8897 26 1 -0.3634 0.5134 -0.8902 27 1 1.6093 2.8213 1.0283 28 1 0.0687 3.3762 -0.7108 29 1 4.2367 3.6286 -0.1689 30 1 3.1203 3.1648 -2.2802 31 1 5.9755 -0.2619 0.0009 32 1 5.7398 -2.2559 -2.1985 33 1 5.8546 -3.9267 -1.4939 34 1 11.7072 -3.8815 -2.1008 35 1 11.0841 -6.2631 -2.0928 36 1 8.7907 -6.9345 -1.5002 37 1 7.1185 -5.2254 -0.9151 38 1 6.9228 -3.7255 0.9753 39 1 7.2558 -1.9704 1.3062 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9705096_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:04 Heat of formation + Delta-G solvation = 27.958729 kcal Electronic energy + Delta-G solvation = -23809.406889 eV Core-core repulsion = 20146.702971 eV Total energy + Delta-G solvation = -3662.703919 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.87436 -41.46935 -40.80163 -39.34844 -37.64053 -35.50298 -32.82551 -31.73807 -31.50335 -29.19170 -26.98890 -26.45746 -25.49441 -24.34783 -23.80299 -22.93401 -20.79419 -20.19189 -19.06562 -18.81749 -18.13371 -17.53298 -17.34288 -16.92251 -16.62577 -16.60088 -16.22797 -15.68890 -15.56086 -15.27253 -15.14174 -14.86543 -14.33094 -14.12053 -14.02986 -13.90209 -13.80520 -13.64182 -13.34613 -13.17184 -13.15891 -12.94600 -12.56488 -12.06247 -12.05386 -11.98162 -11.70049 -11.47415 -10.97119 -10.58761 -10.31050 -10.00924 -9.94565 -9.66224 -8.58479 -4.79833 0.05954 0.09454 0.13894 0.19661 0.81331 1.41051 1.75597 1.91861 1.97749 2.39472 2.48425 3.11629 3.12377 3.25706 3.36048 3.44456 3.63763 3.74030 3.91669 3.95364 3.99597 4.14483 4.18323 4.24188 4.31962 4.40789 4.46449 4.46877 4.55867 4.70522 4.78666 4.81425 4.89035 4.93386 4.95871 4.98262 5.12945 5.17913 5.30381 5.35637 5.42294 5.62991 5.83233 6.24594 6.64712 6.93590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.226 4.226 3 C 0.098 3.902 4 C -0.034 4.034 5 O -0.545 6.545 6 Si 0.711 3.289 7 N -0.548 5.548 8 C 0.320 3.680 9 N -0.678 5.678 10 C 0.126 3.874 11 H 0.099 0.901 12 C -0.146 4.146 13 C -0.074 4.074 14 H 0.102 0.898 15 C -0.106 4.106 16 C 0.101 3.899 17 F -0.138 7.138 18 C -0.151 4.151 19 C -0.093 4.093 20 C -0.126 4.126 21 C -0.090 4.090 22 C -0.131 4.131 23 S 0.105 5.895 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.385 0.615 29 H -0.252 1.252 30 H -0.264 1.264 31 H 0.413 0.587 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 -2.070 1.045 2.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.348 4.348 3 C -0.031 4.031 4 C -0.147 4.147 5 O -0.351 6.351 6 Si 0.611 3.389 7 N -0.275 5.275 8 C -0.051 4.051 9 N -0.318 5.318 10 C 0.020 3.980 11 H 0.117 0.883 12 C -0.186 4.186 13 C -0.093 4.093 14 H 0.120 0.880 15 C -0.107 4.107 16 C 0.082 3.918 17 F -0.116 7.116 18 C -0.170 4.170 19 C -0.111 4.111 20 C -0.144 4.144 21 C -0.108 4.108 22 C -0.169 4.169 23 S 0.353 5.647 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.233 0.767 29 H -0.177 1.177 30 H -0.189 1.189 31 H 0.251 0.749 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.286 -3.454 0.581 3.514 hybrid contribution 0.338 0.671 0.242 0.789 sum 0.052 -2.783 0.823 2.902 Atomic orbital electron populations 1.20100 0.86176 1.01397 1.03925 1.25197 1.01557 0.92408 1.15664 1.18899 0.86380 0.95153 1.02675 1.23957 0.93008 0.96216 1.01483 1.86428 1.33890 1.35711 1.79060 0.96198 0.78944 0.84604 0.79130 1.65693 1.17279 1.16887 1.27637 1.23173 0.91753 0.91289 0.98930 1.43574 1.01824 1.06185 1.80205 1.21952 0.98504 0.79871 0.97680 0.88268 1.23688 0.94380 1.02621 0.97868 1.21509 0.92837 0.98109 0.96819 0.87961 1.19706 0.93050 0.95379 1.02534 1.17606 0.93652 0.78166 1.02424 1.91497 1.92705 1.33329 1.94117 1.21220 0.99851 0.93010 1.02941 1.21084 0.96803 0.95176 0.98073 1.21254 0.93343 1.00044 0.99806 1.20917 1.00039 0.91160 0.98701 1.23430 0.93657 1.03611 0.96169 1.83909 0.96311 1.10471 1.73966 0.92506 0.90891 0.89164 0.90206 0.76669 1.17707 1.18875 0.74880 0.90181 0.88042 0.84619 0.84857 0.85088 0.84891 0.87710 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.09 8.91 36.00 0.32 0.23 16 2 C -0.23 -0.84 6.50 -36.03 -0.23 -1.07 16 3 C 0.10 0.46 5.95 -84.19 -0.50 -0.04 16 4 C -0.03 -0.06 2.93 36.00 0.11 0.05 16 5 O -0.54 -0.03 9.80 -35.23 -0.35 -0.38 16 6 Si 0.71 1.12 32.09 -169.99 -5.45 -4.33 16 7 N -0.55 -3.10 8.96 -11.37 -0.10 -3.20 16 8 C 0.32 1.16 8.24 -87.69 -0.72 0.44 16 9 N -0.68 -0.79 5.42 -54.99 -0.30 -1.08 16 10 C 0.13 -0.14 4.31 -67.12 -0.29 -0.43 16 11 H 0.10 -0.16 7.06 -51.93 -0.37 -0.53 16 12 C -0.15 0.20 7.25 -25.92 -0.19 0.01 16 13 C -0.07 0.05 3.79 -90.96 -0.34 -0.29 16 14 H 0.10 0.03 7.44 -51.93 -0.39 -0.35 16 15 C -0.11 -0.03 5.29 -104.55 -0.55 -0.58 16 16 C 0.10 0.18 7.25 -39.42 -0.29 -0.11 16 17 F -0.14 -0.44 16.36 2.25 0.04 -0.40 16 18 C -0.15 -0.08 10.03 -39.51 -0.40 -0.47 16 19 C -0.09 0.07 10.04 -39.59 -0.40 -0.32 16 20 C -0.13 0.16 10.04 -39.58 -0.40 -0.24 16 21 C -0.09 0.10 8.61 -39.59 -0.34 -0.24 16 22 C -0.13 0.24 7.29 -25.92 -0.19 0.06 16 23 S 0.10 0.24 21.69 -107.50 -2.33 -2.09 16 24 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 25 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 26 H 0.09 0.17 6.74 -51.93 -0.35 -0.18 16 27 H 0.08 0.01 7.96 -51.93 -0.41 -0.40 16 28 H 0.38 -1.95 8.74 45.56 0.40 -1.55 16 29 H -0.25 -1.30 7.11 56.52 0.40 -0.90 16 30 H -0.26 -1.52 7.11 56.52 0.40 -1.12 16 31 H 0.41 0.38 8.83 -40.82 -0.36 0.02 16 32 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.10 -0.28 6.31 -51.93 -0.33 -0.61 16 34 H 0.14 -0.10 8.06 -52.49 -0.42 -0.52 16 35 H 0.13 -0.37 8.06 -52.49 -0.42 -0.79 16 36 H 0.13 -0.42 8.06 -52.49 -0.42 -0.85 16 37 H 0.13 -0.43 6.66 -52.48 -0.35 -0.78 16 38 H 0.10 -0.31 7.72 -51.93 -0.40 -0.71 16 39 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 LS Contribution 339.17 15.07 5.11 5.11 Total: 0.00 -7.87 339.17 -12.51 -20.38 By element: Atomic # 1 Polarization: -6.28 SS G_CDS: -4.71 Total: -10.99 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.41 Total: -3.02 kcal Atomic # 7 Polarization: -3.88 SS G_CDS: -0.40 Total: -4.28 kcal Atomic # 8 Polarization: -0.03 SS G_CDS: -0.35 Total: -0.38 kcal Atomic # 9 Polarization: -0.44 SS G_CDS: 0.04 Total: -0.40 kcal Atomic # 14 Polarization: 1.12 SS G_CDS: -5.45 Total: -4.33 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -2.33 Total: -2.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -7.87 -12.51 -20.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705096_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.338 kcal (2) G-P(sol) polarization free energy of solvation -7.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds