Wall clock time and date at job start Mon Mar 8 2021 10:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86298 * 109.46875 * 2 1 4 4 C 1.50703 * 109.47115 * 119.99923 * 2 1 3 5 5 C 1.33327 * 125.94985 * 65.00003 * 4 2 1 6 6 N 1.32118 * 114.58046 * 179.97438 * 5 4 2 7 7 C 1.29692 * 116.86334 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94937 * 179.97438 * 7 6 5 9 9 C 1.46501 * 119.99947 * 0.02562 * 8 7 6 10 10 H 1.09001 * 112.90705 * 336.26076 * 9 8 7 11 11 C 1.53782 * 113.61142 * 107.50606 * 9 8 7 12 12 C 1.53962 * 87.11063 * 89.18830 * 11 9 8 13 13 H 1.08993 * 113.61598 * 270.84305 * 12 11 9 14 14 C 1.50700 * 113.66521 * 139.88647 * 12 11 9 15 15 C 1.38239 * 120.00420 * 322.28168 * 14 12 11 16 16 C 1.38228 * 120.00104 * 179.76396 * 15 14 12 17 17 C 1.38243 * 120.00146 * 0.50833 * 16 15 14 18 18 C 1.38237 * 119.99588 * 359.74470 * 17 16 15 19 19 C 1.38235 * 119.99543 * 142.55106 * 14 12 11 20 20 C 1.53781 * 113.61619 * 205.00451 * 9 8 7 21 21 S 1.70965 * 110.10125 * 0.23978 * 7 6 5 22 22 H 0.96698 * 113.99784 * 59.99930 * 1 2 3 23 23 H 1.08995 * 109.47271 * 240.00077 * 2 1 3 24 24 H 1.48511 * 109.99918 * 59.99941 * 3 2 1 25 25 H 1.48504 * 110.00174 * 181.31554 * 3 2 1 26 26 H 1.08003 * 122.71260 * 359.97438 * 5 4 2 27 27 H 0.97001 * 120.00080 * 180.02562 * 8 7 6 28 28 H 1.08997 * 113.61668 * 203.66381 * 11 9 8 29 29 H 1.08998 * 113.61674 * 334.48890 * 11 9 8 30 30 H 1.07997 * 119.99709 * 359.97438 * 15 14 12 31 31 H 1.07994 * 120.00065 * 180.22861 * 16 15 14 32 32 H 1.07996 * 120.00229 * 179.72768 * 17 16 15 33 33 H 1.08001 * 119.99747 * 179.97438 * 18 17 16 34 34 H 1.07991 * 120.00202 * 0.02562 * 19 14 12 35 35 H 1.09002 * 113.61445 * 25.43587 * 20 9 8 36 36 H 1.09002 * 113.61408 * 156.25317 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7622 -2.0026 1.5122 6 7 2.2982 -2.3905 2.6558 7 6 2.9116 -1.4848 3.3525 8 7 3.5312 -1.7060 4.5725 9 6 3.5234 -3.0455 5.1659 10 1 2.6985 -3.6625 4.8096 11 6 4.8887 -3.7512 5.1115 12 6 5.1945 -3.0952 6.4704 13 1 5.6579 -2.1123 6.3863 14 6 5.9162 -4.0038 7.4319 15 6 5.5978 -5.3481 7.4841 16 6 6.2633 -6.1823 8.3626 17 6 7.2400 -5.6705 9.1965 18 6 7.5547 -4.3253 9.1479 19 6 6.8929 -3.4920 8.2656 20 6 3.6742 -3.0423 6.6962 21 16 2.8383 0.0233 2.5505 22 1 -0.3933 0.4417 -0.7650 23 1 1.7924 -0.5138 -0.8899 24 1 1.5614 2.4679 1.2086 25 1 3.5346 1.7704 -0.0320 26 1 1.2301 -2.6777 0.8584 27 1 3.9700 -0.9739 5.0335 28 1 4.8206 -4.8380 5.1583 29 1 5.5289 -3.4017 4.3015 30 1 4.8315 -5.7470 6.8361 31 1 6.0172 -7.2332 8.4008 32 1 7.7568 -6.3215 9.8860 33 1 8.3174 -3.9254 9.7997 34 1 7.1383 -2.4410 8.2282 35 1 3.3345 -2.1194 7.1665 36 1 3.2727 -3.9347 7.1764 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9705152_15704118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:15 Heat of formation + Delta-G solvation = 76.588784 kcal Electronic energy + Delta-G solvation = -19442.891079 eV Core-core repulsion = 16407.287512 eV Total energy + Delta-G solvation = -3035.603567 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.42457 -40.48075 -39.13835 -37.76153 -35.32468 -32.06960 -31.79249 -31.05402 -26.92755 -26.74779 -26.06097 -24.43935 -23.53447 -22.61155 -21.12867 -20.11231 -19.21298 -18.47740 -18.12979 -17.47086 -16.74520 -16.29982 -16.01692 -15.88995 -15.66431 -15.41855 -14.99140 -14.76227 -14.42144 -14.29727 -14.24715 -14.09766 -13.60495 -13.26835 -12.87342 -12.70066 -12.42308 -12.23346 -12.06095 -11.93203 -11.77157 -11.27410 -11.04236 -10.62336 -10.29156 -10.14714 -9.83153 -9.58243 -8.74457 -5.20921 -0.04183 0.09250 0.41566 0.48876 0.67043 1.23494 1.58360 1.93080 2.03607 2.07570 2.81407 3.35759 3.45237 3.57569 3.61913 3.72775 3.85311 3.98359 3.99174 4.09496 4.18103 4.23428 4.41439 4.51222 4.57702 4.62134 4.65702 4.71354 4.76581 4.90497 4.93592 5.01588 5.08832 5.13442 5.25855 5.56269 5.62618 5.69697 5.86521 6.03278 6.08834 6.59682 7.00230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.017 4.017 3 Si 0.668 3.332 4 C -0.261 4.261 5 C 0.124 3.876 6 N -0.545 5.545 7 C 0.332 3.668 8 N -0.675 5.675 9 C 0.135 3.865 10 H 0.108 0.892 11 C -0.144 4.144 12 C -0.074 4.074 13 H 0.095 0.905 14 C -0.072 4.072 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.136 4.136 21 S 0.070 5.930 22 H 0.383 0.617 23 H 0.082 0.918 24 H -0.239 1.239 25 H -0.243 1.243 26 H 0.179 0.821 27 H 0.414 0.586 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 1.601 -1.618 2.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.131 4.131 3 Si 0.567 3.433 4 C -0.383 4.383 5 C -0.027 4.027 6 N -0.270 5.270 7 C -0.038 4.038 8 N -0.313 5.313 9 C 0.028 3.972 10 H 0.126 0.874 11 C -0.183 4.183 12 C -0.093 4.093 13 H 0.113 0.887 14 C -0.072 4.072 15 C -0.135 4.135 16 C -0.135 4.135 17 C -0.142 4.142 18 C -0.136 4.136 19 C -0.135 4.135 20 C -0.174 4.174 21 S 0.318 5.682 22 H 0.231 0.769 23 H 0.100 0.900 24 H -0.162 1.162 25 H -0.167 1.167 26 H 0.196 0.804 27 H 0.251 0.749 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.095 0.905 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.463 2.187 -0.139 2.635 hybrid contribution -0.101 -0.832 -0.107 0.845 sum 1.361 1.355 -0.245 1.937 Atomic orbital electron populations 1.86525 1.17198 1.81743 1.49738 1.23681 0.85448 1.09302 0.94654 0.95167 0.81758 0.78127 0.88204 1.24286 1.14850 0.96797 1.02394 1.21358 0.96258 0.93072 0.92017 1.66464 1.18832 1.33138 1.08609 1.23770 0.95227 0.92900 0.91889 1.43721 1.58960 1.11395 1.17248 1.21911 0.98992 0.83112 0.93217 0.87384 1.23642 0.97191 1.00941 0.96568 1.21626 0.94907 0.98360 0.94377 0.88652 1.19672 0.96569 0.94052 0.96883 1.21019 1.00171 0.93135 0.99171 1.21184 0.96423 0.99868 0.96052 1.21207 0.98052 0.95590 0.99367 1.21188 0.99749 0.93905 0.98762 1.21071 0.96448 0.99769 0.96247 1.23463 0.94994 1.03821 0.95159 1.84105 1.56087 1.11993 1.15974 0.76935 0.89994 1.16228 1.16713 0.80440 0.74850 0.88527 0.90750 0.85935 0.85960 0.86051 0.86026 0.86218 0.90507 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.21 12.86 -35.23 -0.45 -0.66 16 2 C -0.02 0.00 2.98 36.01 0.11 0.10 16 3 Si 0.67 -0.39 31.07 -169.99 -5.28 -5.67 16 4 C -0.26 -0.78 5.76 -36.02 -0.21 -0.99 16 5 C 0.12 0.43 11.24 -19.14 -0.22 0.22 16 6 N -0.55 -2.38 9.83 -15.21 -0.15 -2.53 16 7 C 0.33 0.98 8.09 -87.68 -0.71 0.27 16 8 N -0.67 -0.30 5.42 -54.99 -0.30 -0.60 16 9 C 0.14 -0.01 4.44 -67.12 -0.30 -0.31 16 10 H 0.11 0.15 7.66 -51.93 -0.40 -0.25 16 11 C -0.14 0.06 7.26 -25.82 -0.19 -0.13 16 12 C -0.07 0.07 3.87 -90.86 -0.35 -0.28 16 13 H 0.10 -0.15 8.10 -51.93 -0.42 -0.57 16 14 C -0.07 -0.04 5.29 -104.62 -0.55 -0.59 16 15 C -0.12 -0.07 8.60 -39.58 -0.34 -0.41 16 16 C -0.12 -0.09 10.05 -39.58 -0.40 -0.48 16 17 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 18 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 19 C -0.12 -0.09 9.71 -39.58 -0.38 -0.48 16 20 C -0.14 0.17 7.29 -25.92 -0.19 -0.02 16 21 S 0.07 0.19 20.59 -107.50 -2.21 -2.02 16 22 H 0.38 -1.86 8.74 45.56 0.40 -1.46 16 23 H 0.08 -0.14 7.96 -51.93 -0.41 -0.55 16 24 H -0.24 -0.62 7.11 56.52 0.40 -0.22 16 25 H -0.24 -0.43 7.11 56.52 0.40 -0.03 16 26 H 0.18 0.29 8.06 -52.48 -0.42 -0.14 16 27 H 0.41 -0.64 8.83 -40.82 -0.36 -1.00 16 28 H 0.10 -0.07 6.33 -51.93 -0.33 -0.40 16 29 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 30 H 0.12 -0.10 6.68 -52.49 -0.35 -0.45 16 31 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 32 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 33 H 0.12 -0.09 8.06 -52.49 -0.42 -0.52 16 34 H 0.12 -0.08 8.05 -52.49 -0.42 -0.51 16 35 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 36 H 0.10 -0.14 7.71 -51.93 -0.40 -0.54 16 LS Contribution 317.22 15.07 4.78 4.78 Total: 0.00 -6.82 317.22 -12.57 -19.38 By element: Atomic # 1 Polarization: -4.15 SS G_CDS: -4.43 Total: -8.58 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -4.52 Total: -4.10 kcal Atomic # 7 Polarization: -2.68 SS G_CDS: -0.45 Total: -3.13 kcal Atomic # 8 Polarization: -0.21 SS G_CDS: -0.45 Total: -0.66 kcal Atomic # 14 Polarization: -0.39 SS G_CDS: -5.28 Total: -5.67 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.21 Total: -2.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -6.82 -12.57 -19.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705152_15704118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.971 kcal (2) G-P(sol) polarization free energy of solvation -6.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds