Wall clock time and date at job start Mon Mar 8 2021 10:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33325 * 125.94939 * 2 1 4 4 C 1.50699 * 122.71256 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.46768 * 329.97879 * 4 3 2 6 6 Si 1.86304 * 109.47199 * 209.98461 * 4 3 2 7 7 N 1.32124 * 114.57827 * 179.97438 * 3 2 1 8 8 C 1.29677 * 116.86660 * 0.02562 * 7 3 2 9 9 N 1.38617 * 124.95049 * 179.97438 * 8 7 3 10 10 C 1.46500 * 120.00286 * 179.97438 * 9 8 7 11 11 H 1.09002 * 112.85002 * 25.32709 * 10 9 8 12 12 C 1.53776 * 113.61678 * 156.52833 * 10 9 8 13 13 C 1.53783 * 87.08178 * 89.11352 * 12 10 9 14 14 H 1.08995 * 113.61810 * 270.80572 * 13 12 10 15 15 C 1.50697 * 113.61417 * 139.97816 * 13 12 10 16 16 C 1.38241 * 120.00161 * 299.73297 * 15 13 12 17 17 C 1.38237 * 119.99502 * 179.80525 * 16 15 13 18 18 C 1.38231 * 120.00310 * 0.42377 * 17 16 15 19 19 C 1.38234 * 119.99955 * 359.80779 * 18 17 16 20 20 C 1.38233 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.53779 * 113.61141 * 254.13902 * 10 9 8 22 22 S 1.70965 * 110.10409 * 359.97438 * 8 7 3 23 23 H 1.08997 * 109.47139 * 89.99862 * 1 2 3 24 24 H 1.09005 * 109.46771 * 209.99727 * 1 2 3 25 25 H 1.08992 * 109.47377 * 329.99868 * 1 2 3 26 26 H 1.08999 * 109.47353 * 89.98291 * 4 3 2 27 27 H 0.96700 * 114.00177 * 180.02562 * 5 4 3 28 28 H 1.48501 * 109.99603 * 298.67733 * 6 4 3 29 29 H 1.48500 * 110.00205 * 59.99531 * 6 4 3 30 30 H 0.96996 * 119.99697 * 359.97438 * 9 8 7 31 31 H 1.08997 * 113.61649 * 203.66630 * 12 10 9 32 32 H 1.09005 * 113.61354 * 334.57268 * 12 10 9 33 33 H 1.07991 * 119.99759 * 0.02562 * 16 15 13 34 34 H 1.08000 * 119.99355 * 180.20412 * 17 16 15 35 35 H 1.08004 * 119.99688 * 179.78572 * 18 17 16 36 36 H 1.08002 * 119.99499 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.00022 * 179.97438 * 20 19 18 38 38 H 1.09002 * 113.61851 * 25.43002 * 21 10 9 39 39 H 1.09010 * 113.61589 * 156.33583 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.4812 2.5023 -0.6731 6 14 2.9322 3.6153 -0.8774 7 7 3.5850 0.8188 0.0005 8 6 3.9314 -0.4308 0.0005 9 7 5.2385 -0.8925 0.0005 10 6 5.5066 -2.3327 0.0010 11 1 4.6915 -2.9152 -0.4284 12 6 6.8899 -2.7020 -0.5603 13 6 7.4256 -2.5477 0.8730 14 1 7.7519 -1.5353 1.1106 15 6 8.4406 -3.5944 1.2540 16 6 8.0920 -4.9321 1.2416 17 6 9.0244 -5.8924 1.5873 18 6 10.3026 -5.5146 1.9537 19 6 10.6496 -4.1766 1.9707 20 6 9.7184 -3.2165 1.6218 21 6 5.9982 -2.8673 1.3565 22 16 2.5413 -1.4260 0.0004 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5138 26 1 1.6092 2.8211 1.0283 27 1 0.0690 3.3762 -0.7113 28 1 4.2368 3.6286 -0.1683 29 1 3.1209 3.1651 -2.2799 30 1 5.9755 -0.2619 0.0001 31 1 6.9486 -3.7216 -0.9410 32 1 7.2892 -1.9651 -1.2572 33 1 7.0925 -5.2270 0.9585 34 1 8.7530 -6.9377 1.5744 35 1 11.0299 -6.2647 2.2271 36 1 11.6482 -3.8814 2.2575 37 1 9.9894 -2.1711 1.6355 38 1 5.6780 -2.2639 2.2059 39 1 5.8136 -3.9322 1.4989 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9705152_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:17 Heat of formation + Delta-G solvation = 71.278286 kcal Electronic energy + Delta-G solvation = -21463.107021 eV Core-core repulsion = 18271.735555 eV Total energy + Delta-G solvation = -3191.371466 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48582 -40.81665 -39.30665 -37.64821 -35.44584 -32.76169 -31.91172 -31.50702 -29.17354 -26.94204 -26.29364 -25.47572 -24.28613 -23.56710 -22.69699 -20.69215 -20.14300 -19.06184 -18.32155 -17.92336 -17.27766 -16.77463 -16.33933 -16.25251 -15.99844 -15.60986 -15.44510 -15.00732 -14.69105 -14.42324 -14.21644 -14.04426 -13.92305 -13.83349 -13.63068 -13.37856 -13.19596 -12.86904 -12.80968 -12.32985 -12.04166 -11.97060 -11.82490 -11.70307 -11.33505 -11.05300 -10.58704 -10.26466 -9.95399 -9.86724 -9.62622 -8.58633 -4.80540 0.07460 0.20014 0.37404 0.45257 0.82348 1.40825 1.76326 1.91450 1.97424 2.38435 2.76962 3.11966 3.21952 3.42519 3.54500 3.74170 3.92184 3.98093 4.05218 4.09186 4.17927 4.19642 4.30285 4.41990 4.45669 4.49696 4.52704 4.55636 4.62824 4.80853 4.83430 4.90855 4.94346 4.99714 5.04953 5.09718 5.19745 5.40000 5.52318 5.59002 5.62391 5.67204 6.04914 6.25048 6.64064 6.93396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.226 4.226 3 C 0.099 3.901 4 C -0.035 4.035 5 O -0.544 6.544 6 Si 0.712 3.288 7 N -0.549 5.549 8 C 0.320 3.680 9 N -0.677 5.677 10 C 0.125 3.875 11 H 0.097 0.903 12 C -0.132 4.132 13 C -0.072 4.072 14 H 0.098 0.902 15 C -0.073 4.073 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.116 4.116 21 C -0.148 4.148 22 S 0.105 5.895 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.385 0.615 28 H -0.252 1.252 29 H -0.264 1.264 30 H 0.412 0.588 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 0.032 0.806 1.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.349 4.349 3 C -0.030 4.030 4 C -0.148 4.148 5 O -0.350 6.350 6 Si 0.612 3.388 7 N -0.276 5.276 8 C -0.051 4.051 9 N -0.317 5.317 10 C 0.018 3.982 11 H 0.115 0.885 12 C -0.170 4.170 13 C -0.090 4.090 14 H 0.116 0.884 15 C -0.073 4.073 16 C -0.135 4.135 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.134 4.134 21 C -0.187 4.187 22 S 0.353 5.647 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.233 0.767 28 H -0.177 1.177 29 H -0.189 1.189 30 H 0.251 0.749 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.414 -1.408 0.316 1.502 hybrid contribution 0.224 0.407 0.342 0.577 sum 0.637 -1.001 0.658 1.357 Atomic orbital electron populations 1.20105 0.86165 1.02489 1.02841 1.25191 1.01581 0.92446 1.15661 1.18927 0.86383 0.95107 1.02578 1.23954 0.93098 0.96252 1.01455 1.86466 1.33778 1.35689 1.79103 0.96195 0.78920 0.84610 0.79117 1.65693 1.17271 1.16879 1.27779 1.23183 0.91798 0.91269 0.98809 1.43579 1.01755 1.06218 1.80181 1.21987 0.98561 0.79742 0.97898 0.88504 1.23415 0.93653 1.03497 0.96410 1.21606 0.93130 0.98061 0.96205 0.88373 1.19650 0.94362 0.93945 0.99327 1.21004 0.99584 0.92386 1.00575 1.21182 0.93628 0.99544 0.99173 1.21213 0.96701 0.96245 0.99972 1.21196 0.99548 0.93181 0.99620 1.21082 0.93111 0.99593 0.99625 1.23731 0.94860 1.02505 0.97578 1.83934 0.96324 1.10416 1.74006 0.90891 0.92462 0.89340 0.90176 0.76680 1.17732 1.18889 0.74944 0.87841 0.90134 0.85981 0.85936 0.86013 0.85976 0.86161 0.90291 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.09 8.96 36.00 0.32 0.23 16 2 C -0.23 -0.85 6.50 -36.03 -0.23 -1.08 16 3 C 0.10 0.46 5.95 -84.18 -0.50 -0.04 16 4 C -0.04 -0.06 2.82 36.01 0.10 0.05 16 5 O -0.54 -0.02 9.86 -35.23 -0.35 -0.37 16 6 Si 0.71 1.00 32.08 -169.99 -5.45 -4.45 16 7 N -0.55 -3.04 8.95 -11.36 -0.10 -3.14 16 8 C 0.32 1.15 8.24 -87.68 -0.72 0.43 16 9 N -0.68 -0.66 5.42 -55.00 -0.30 -0.96 16 10 C 0.12 -0.13 4.28 -67.12 -0.29 -0.42 16 11 H 0.10 -0.12 7.11 -51.93 -0.37 -0.49 16 12 C -0.13 0.24 7.29 -25.92 -0.19 0.05 16 13 C -0.07 0.09 3.87 -90.81 -0.35 -0.26 16 14 H 0.10 -0.13 8.09 -51.93 -0.42 -0.55 16 15 C -0.07 -0.01 5.29 -104.62 -0.55 -0.57 16 16 C -0.12 0.00 8.63 -39.58 -0.34 -0.34 16 17 C -0.12 -0.03 10.05 -39.58 -0.40 -0.43 16 18 C -0.12 -0.06 10.05 -39.59 -0.40 -0.46 16 19 C -0.12 -0.07 10.05 -39.58 -0.40 -0.47 16 20 C -0.12 -0.07 9.71 -39.58 -0.38 -0.45 16 21 C -0.15 0.20 7.27 -25.77 -0.19 0.01 16 22 S 0.10 0.26 21.71 -107.50 -2.33 -2.08 16 23 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.09 0.10 6.61 -51.93 -0.34 -0.24 16 26 H 0.08 0.00 7.96 -51.93 -0.41 -0.42 16 27 H 0.38 -1.97 8.74 45.56 0.40 -1.57 16 28 H -0.25 -1.24 7.11 56.52 0.40 -0.84 16 29 H -0.26 -1.47 7.11 56.52 0.40 -1.07 16 30 H 0.41 0.19 8.83 -40.82 -0.36 -0.17 16 31 H 0.10 -0.24 7.73 -51.93 -0.40 -0.64 16 32 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.12 -0.21 6.64 -52.49 -0.35 -0.56 16 34 H 0.12 -0.17 8.06 -52.49 -0.42 -0.59 16 35 H 0.12 -0.13 8.06 -52.48 -0.42 -0.55 16 36 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 37 H 0.12 -0.08 8.05 -52.49 -0.42 -0.50 16 38 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 39 H 0.10 -0.21 6.30 -51.92 -0.33 -0.54 16 LS Contribution 334.00 15.07 5.03 5.03 Total: 0.00 -7.49 334.00 -13.19 -20.68 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: -5.17 Total: -10.95 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -4.52 Total: -3.76 kcal Atomic # 7 Polarization: -3.70 SS G_CDS: -0.40 Total: -4.10 kcal Atomic # 8 Polarization: -0.02 SS G_CDS: -0.35 Total: -0.37 kcal Atomic # 14 Polarization: 1.00 SS G_CDS: -5.45 Total: -4.45 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.33 Total: -2.08 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -7.49 -13.19 -20.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705152_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.961 kcal (2) G-P(sol) polarization free energy of solvation -7.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds