Wall clock time and date at job start Mon Mar 8 2021 10:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33325 * 125.94939 * 2 1 4 4 C 1.50699 * 122.71256 * 0.02562 * 3 2 1 5 5 O 1.42902 * 109.46768 * 329.97879 * 4 3 2 6 6 Si 1.86304 * 109.47199 * 209.98461 * 4 3 2 7 7 N 1.32124 * 114.57827 * 179.97438 * 3 2 1 8 8 C 1.29677 * 116.86660 * 0.02562 * 7 3 2 9 9 N 1.38617 * 124.95049 * 179.97438 * 8 7 3 10 10 C 1.46500 * 120.00286 * 179.97438 * 9 8 7 11 11 H 1.09002 * 112.85002 * 25.32709 * 10 9 8 12 12 C 1.53776 * 113.61678 * 156.52833 * 10 9 8 13 13 C 1.53783 * 87.08178 * 89.11352 * 12 10 9 14 14 H 1.08995 * 113.61810 * 270.80572 * 13 12 10 15 15 C 1.50697 * 113.61417 * 139.97816 * 13 12 10 16 16 C 1.38241 * 120.00161 * 299.73297 * 15 13 12 17 17 C 1.38237 * 119.99502 * 179.80525 * 16 15 13 18 18 C 1.38231 * 120.00310 * 0.42377 * 17 16 15 19 19 C 1.38234 * 119.99955 * 359.80779 * 18 17 16 20 20 C 1.38233 * 120.00139 * 0.02562 * 19 18 17 21 21 C 1.53779 * 113.61141 * 254.13902 * 10 9 8 22 22 S 1.70965 * 110.10409 * 359.97438 * 8 7 3 23 23 H 1.08997 * 109.47139 * 89.99862 * 1 2 3 24 24 H 1.09005 * 109.46771 * 209.99727 * 1 2 3 25 25 H 1.08992 * 109.47377 * 329.99868 * 1 2 3 26 26 H 1.08999 * 109.47353 * 89.98291 * 4 3 2 27 27 H 0.96700 * 114.00177 * 180.02562 * 5 4 3 28 28 H 1.48501 * 109.99603 * 298.67733 * 6 4 3 29 29 H 1.48500 * 110.00205 * 59.99531 * 6 4 3 30 30 H 0.96996 * 119.99697 * 359.97438 * 9 8 7 31 31 H 1.08997 * 113.61649 * 203.66630 * 12 10 9 32 32 H 1.09005 * 113.61354 * 334.57268 * 12 10 9 33 33 H 1.07991 * 119.99759 * 0.02562 * 16 15 13 34 34 H 1.08000 * 119.99355 * 180.20412 * 17 16 15 35 35 H 1.08004 * 119.99688 * 179.78572 * 18 17 16 36 36 H 1.08002 * 119.99499 * 179.97438 * 19 18 17 37 37 H 1.08001 * 120.00022 * 179.97438 * 20 19 18 38 38 H 1.09002 * 113.61851 * 25.43002 * 21 10 9 39 39 H 1.09010 * 113.61589 * 156.33583 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.4812 2.5023 -0.6731 6 14 2.9322 3.6153 -0.8774 7 7 3.5850 0.8188 0.0005 8 6 3.9314 -0.4308 0.0005 9 7 5.2385 -0.8925 0.0005 10 6 5.5066 -2.3327 0.0010 11 1 4.6915 -2.9152 -0.4284 12 6 6.8899 -2.7020 -0.5603 13 6 7.4256 -2.5477 0.8730 14 1 7.7519 -1.5353 1.1106 15 6 8.4406 -3.5944 1.2540 16 6 8.0920 -4.9321 1.2416 17 6 9.0244 -5.8924 1.5873 18 6 10.3026 -5.5146 1.9537 19 6 10.6496 -4.1766 1.9707 20 6 9.7184 -3.2165 1.6218 21 6 5.9982 -2.8673 1.3565 22 16 2.5413 -1.4260 0.0004 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3634 0.8899 0.5138 26 1 1.6092 2.8211 1.0283 27 1 0.0690 3.3762 -0.7113 28 1 4.2368 3.6286 -0.1683 29 1 3.1209 3.1651 -2.2799 30 1 5.9755 -0.2619 0.0001 31 1 6.9486 -3.7216 -0.9410 32 1 7.2892 -1.9651 -1.2572 33 1 7.0925 -5.2270 0.9585 34 1 8.7530 -6.9377 1.5744 35 1 11.0299 -6.2647 2.2271 36 1 11.6482 -3.8814 2.2575 37 1 9.9894 -2.1711 1.6355 38 1 5.6780 -2.2639 2.2059 39 1 5.8136 -3.9322 1.4989 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705152_15704122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:31:16 Heat of formation + Delta-G solvation = 76.344050 kcal Electronic energy + Delta-G solvation = -21462.887353 eV Core-core repulsion = 18271.735555 eV Total energy + Delta-G solvation = -3191.151798 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48988 -40.95347 -39.28361 -37.66826 -35.51177 -32.86274 -31.88605 -31.51383 -29.27851 -26.84326 -26.27807 -25.60481 -24.42198 -23.54965 -22.68126 -20.74961 -20.21523 -19.15141 -18.32735 -17.92550 -17.38421 -16.76466 -16.44045 -16.26719 -16.02063 -15.67919 -15.49603 -15.05595 -14.66609 -14.41756 -14.31110 -14.16203 -13.98493 -13.94441 -13.58070 -13.46553 -13.21448 -12.93052 -12.79437 -12.38730 -12.24634 -11.98981 -11.80734 -11.75203 -11.29223 -11.12379 -10.81020 -10.38570 -10.09160 -9.85591 -9.60536 -8.73995 -4.97609 -0.13335 0.01910 0.38994 0.46334 0.63016 1.26034 1.65128 1.74189 1.76270 2.19558 2.79102 3.09046 3.29531 3.49665 3.61482 3.82530 3.94800 3.99040 4.07216 4.11005 4.15900 4.25903 4.29787 4.33201 4.41538 4.55884 4.58350 4.67316 4.70424 4.80437 4.84772 4.88744 4.91435 5.01269 5.08302 5.13095 5.14868 5.31507 5.54092 5.58704 5.61210 5.69010 6.08744 6.14065 6.74025 6.94271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.243 4.243 3 C 0.071 3.929 4 C -0.035 4.035 5 O -0.551 6.551 6 Si 0.811 3.189 7 N -0.585 5.585 8 C 0.308 3.692 9 N -0.673 5.673 10 C 0.122 3.878 11 H 0.102 0.898 12 C -0.123 4.123 13 C -0.070 4.070 14 H 0.096 0.904 15 C -0.079 4.079 16 C -0.124 4.124 17 C -0.128 4.128 18 C -0.137 4.137 19 C -0.131 4.131 20 C -0.133 4.133 21 C -0.141 4.141 22 S 0.130 5.870 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.408 0.592 28 H -0.304 1.304 29 H -0.323 1.323 30 H 0.413 0.587 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.067 0.933 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -0.488 1.016 2.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.366 4.366 3 C -0.057 4.057 4 C -0.147 4.147 5 O -0.361 6.361 6 Si 0.719 3.281 7 N -0.314 5.314 8 C -0.063 4.063 9 N -0.313 5.313 10 C 0.017 3.983 11 H 0.120 0.880 12 C -0.161 4.161 13 C -0.088 4.088 14 H 0.114 0.886 15 C -0.079 4.079 16 C -0.142 4.142 17 C -0.146 4.146 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.180 4.180 22 S 0.378 5.622 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.260 0.740 28 H -0.232 1.232 29 H -0.253 1.253 30 H 0.251 0.749 31 H 0.132 0.868 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.535 -1.914 0.542 2.060 hybrid contribution 0.592 0.528 0.238 0.828 sum 0.057 -1.387 0.780 1.592 Atomic orbital electron populations 1.20129 0.84876 1.03279 1.02905 1.25559 1.02679 0.92768 1.15546 1.19452 0.86411 0.96781 1.03047 1.23958 0.93601 0.94504 1.02619 1.86422 1.32909 1.37933 1.78885 0.95384 0.76189 0.82677 0.73862 1.65758 1.18172 1.18102 1.29318 1.23496 0.92929 0.91387 0.98511 1.43756 1.01031 1.07112 1.79354 1.22106 0.99172 0.78646 0.98394 0.87999 1.23386 0.92710 1.03990 0.95985 1.21584 0.92885 0.97678 0.96635 0.88580 1.19819 0.94443 0.94453 0.99182 1.21250 1.00389 0.92243 1.00314 1.21461 0.93649 1.00490 0.98991 1.21463 0.97323 0.96552 1.00191 1.21421 1.00168 0.93464 0.99860 1.21302 0.93584 1.00100 1.00072 1.23706 0.94517 1.02965 0.96817 1.83707 0.95281 1.09517 1.73659 0.91069 0.91523 0.88700 0.88140 0.73989 1.23238 1.25274 0.74900 0.86823 0.90235 0.84302 0.84514 0.84915 0.85053 0.85546 0.91390 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.14 8.96 71.24 0.64 0.50 16 2 C -0.24 -1.83 6.50 24.57 0.16 -1.67 16 3 C 0.07 0.70 5.95 41.40 0.25 0.95 16 4 C -0.03 -0.10 2.82 71.24 0.20 0.10 16 5 O -0.55 0.48 9.86 -148.98 -1.47 -0.99 16 6 Si 0.81 3.13 32.08 68.60 2.20 5.33 16 7 N -0.58 -7.21 8.95 -189.86 -1.70 -8.91 16 8 C 0.31 2.46 8.24 179.32 1.48 3.94 16 9 N -0.67 -1.80 5.42 -327.91 -1.78 -3.58 16 10 C 0.12 -0.27 4.28 45.52 0.19 -0.08 16 11 H 0.10 -0.30 7.11 -2.39 -0.02 -0.32 16 12 C -0.12 0.49 7.29 31.12 0.23 0.71 16 13 C -0.07 0.17 3.87 -10.92 -0.04 0.13 16 14 H 0.10 -0.20 8.09 -2.39 -0.02 -0.22 16 15 C -0.08 -0.03 5.29 -19.87 -0.11 -0.13 16 16 C -0.12 0.07 8.63 22.27 0.19 0.26 16 17 C -0.13 -0.03 10.05 22.27 0.22 0.19 16 18 C -0.14 -0.16 10.05 22.27 0.22 0.06 16 19 C -0.13 -0.23 10.05 22.27 0.22 0.00 16 20 C -0.13 -0.23 9.71 22.27 0.22 -0.02 16 21 C -0.14 0.41 7.27 31.21 0.23 0.64 16 22 S 0.13 0.64 21.71 -56.49 -1.23 -0.58 16 23 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 24 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 25 H 0.09 0.12 6.61 -2.39 -0.02 0.11 16 26 H 0.10 -0.12 7.96 -2.39 -0.02 -0.14 16 27 H 0.41 -4.85 8.74 -74.06 -0.65 -5.50 16 28 H -0.30 -3.69 7.11 99.48 0.71 -2.99 16 29 H -0.32 -4.43 7.11 99.48 0.71 -3.73 16 30 H 0.41 0.85 8.83 -92.71 -0.82 0.03 16 31 H 0.11 -0.64 7.73 -2.39 -0.02 -0.66 16 32 H 0.08 -0.26 8.14 -2.38 -0.02 -0.28 16 33 H 0.14 -0.66 6.64 -2.92 -0.02 -0.68 16 34 H 0.14 -0.47 8.06 -2.91 -0.02 -0.49 16 35 H 0.13 -0.27 8.06 -2.91 -0.02 -0.29 16 36 H 0.13 -0.16 8.06 -2.91 -0.02 -0.19 16 37 H 0.13 -0.07 8.05 -2.91 -0.02 -0.09 16 38 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.11 -0.59 6.30 -2.38 -0.02 -0.61 16 Total: 0.00 -19.01 334.00 -0.01 -19.03 By element: Atomic # 1 Polarization: -15.52 SS G_CDS: -0.35 Total: -15.86 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 4.30 Total: 5.57 kcal Atomic # 7 Polarization: -9.01 SS G_CDS: -3.48 Total: -12.49 kcal Atomic # 8 Polarization: 0.48 SS G_CDS: -1.47 Total: -0.99 kcal Atomic # 14 Polarization: 3.13 SS G_CDS: 2.20 Total: 5.33 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -1.23 Total: -0.58 kcal Total: -19.01 -0.01 -19.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705152_15704122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.370 kcal (2) G-P(sol) polarization free energy of solvation -19.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds