Wall clock time and date at job start Mon Mar 8 2021 10:31:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.33322 * 125.95064 * 2 1
4 4 C 1.50704 * 122.71225 * 359.97438 * 3 2 1
5 5 O 1.42898 * 109.46970 * 329.99988 * 4 3 2
6 6 Si 1.86300 * 109.47097 * 210.00136 * 4 3 2
7 7 N 1.32121 * 114.57714 * 179.75108 * 3 2 1
8 8 C 1.29685 * 116.86748 * 0.46886 * 7 3 2
9 9 N 1.38607 * 124.94993 * 179.81273 * 8 7 3
10 10 C 1.46496 * 119.99711 * 179.72699 * 9 8 7
11 11 H 1.09000 * 112.91246 * 23.74848 * 10 9 8
12 12 C 1.53786 * 113.61518 * 155.00089 * 10 9 8
13 13 C 1.53781 * 87.17350 * 89.15486 * 12 10 9
14 14 H 1.08996 * 113.61580 * 270.76247 * 13 12 10
15 15 C 1.50703 * 113.61417 * 139.93966 * 13 12 10
16 16 C 1.38198 * 119.99197 * 299.72457 * 15 13 12
17 17 C 1.38374 * 119.98228 * 179.76719 * 16 15 13
18 18 Cl 1.73598 * 120.01201 * 180.23189 * 17 16 15
19 19 C 1.38336 * 119.97323 * 0.53318 * 17 16 15
20 20 C 1.38236 * 119.98631 * 359.72037 * 19 17 16
21 21 C 1.38221 * 120.01601 * 0.02562 * 20 19 17
22 22 C 1.53782 * 87.08260 * 25.39213 * 13 12 10
23 23 S 1.70968 * 110.09884 * 359.55273 * 8 7 3
24 24 H 1.09000 * 109.47648 * 179.97438 * 1 2 3
25 25 H 1.09006 * 109.47474 * 299.97986 * 1 2 3
26 26 H 1.09006 * 109.47150 * 59.97689 * 1 2 3
27 27 H 1.08999 * 109.47248 * 89.99935 * 4 3 2
28 28 H 0.96697 * 114.00090 * 179.97438 * 5 4 3
29 29 H 1.48494 * 109.99864 * 59.99928 * 6 4 3
30 30 H 1.48502 * 109.99749 * 181.31825 * 6 4 3
31 31 H 0.97001 * 120.00172 * 359.72167 * 9 8 7
32 32 H 1.09002 * 113.61357 * 334.56403 * 12 10 9
33 33 H 1.09002 * 113.61608 * 203.74565 * 12 10 9
34 34 H 1.07999 * 120.00832 * 0.02562 * 16 15 13
35 35 H 1.08001 * 120.00642 * 179.70659 * 19 17 16
36 36 H 1.08000 * 119.99122 * 180.02562 * 20 19 17
37 37 H 1.08000 * 119.99055 * 179.97438 * 21 20 19
38 38 H 1.08997 * 113.61668 * 89.11298 * 22 13 12
39 39 H 1.08998 * 113.61674 * 219.93807 * 22 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2897 1.0793 0.0000
4 6 1.7414 2.4830 -0.0006
5 8 0.4815 2.5019 -0.6747
6 14 2.9326 3.6147 -0.8787
7 7 3.5850 0.8187 0.0052
8 6 3.9315 -0.4310 0.0002
9 7 5.2384 -0.8926 0.0006
10 6 5.5064 -2.3329 0.0006
11 1 4.6807 -2.9182 -0.4041
12 6 6.8749 -2.7048 -0.5944
13 6 7.4492 -2.5459 0.8233
14 1 7.7832 -1.5331 1.0481
15 6 8.4729 -3.5926 1.1807
16 6 8.1224 -4.9294 1.1828
17 6 9.0638 -5.8906 1.5063
18 17 8.6259 -7.5704 1.5033
19 6 10.3523 -5.5119 1.8381
20 6 10.7002 -4.1740 1.8407
21 6 9.7609 -3.2147 1.5124
22 6 6.0376 -2.8613 1.3456
23 16 2.5412 -1.4261 0.0001
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3634 0.5135 0.8902
26 1 -0.3634 0.5142 -0.8898
27 1 1.6088 2.8217 1.0269
28 1 0.0690 3.3757 -0.7129
29 1 3.1219 3.1635 -2.2807
30 1 2.4185 5.0077 -0.8583
31 1 5.9755 -0.2621 0.0009
32 1 7.2561 -1.9711 -1.3047
33 1 6.9234 -3.7257 -0.9733
34 1 7.1151 -5.2241 0.9279
35 1 11.0862 -6.2613 2.0953
36 1 11.7062 -3.8783 2.0994
37 1 10.0330 -2.1695 1.5150
38 1 5.8558 -3.9252 1.4976
39 1 5.7434 -2.2550 2.2023
There are 55 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 55
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_27_9705208_15704122.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 10:31:31
Heat of formation + Delta-G solvation = 64.545883 kcal
Electronic energy + Delta-G solvation = -23266.473237 eV
Core-core repulsion = 19715.010039 eV
Total energy + Delta-G solvation = -3551.463198 eV
No. of doubly occupied orbitals = 55
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 337.064 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.56834 -40.81310 -39.53005 -37.76905 -37.40046 -35.45693 -32.79317 -31.80002
-31.66910 -29.20080 -26.95827 -26.43572 -25.46930 -24.30535 -23.74625 -22.89075
-20.78436 -20.18038 -19.09117 -18.50731 -18.04864 -17.27728 -16.89404 -16.55948
-16.37111 -16.23101 -15.77226 -15.67774 -15.19676 -14.90415 -14.80897 -14.56171
-14.12119 -13.98973 -13.87391 -13.71459 -13.55763 -13.25420 -13.09738 -13.00695
-12.70019 -12.54699 -12.24419 -12.18959 -11.92000 -11.84489 -11.63769 -11.37361
-11.03289 -10.55905 -10.41368 -9.95373 -9.91215 -9.69248 -8.55403 -4.66777
0.08182 0.11021 0.17267 0.23313 0.84667 1.13414 1.38892 1.76071
1.80911 2.00044 2.16966 2.49945 3.07483 3.19265 3.38168 3.44642
3.66728 3.76076 3.91038 3.93474 4.03323 4.14318 4.19280 4.26481
4.34197 4.42004 4.44903 4.49625 4.54573 4.57652 4.77645 4.80904
4.84570 4.90505 4.93518 4.98100 5.16578 5.19691 5.27888 5.41308
5.43750 5.65533 5.72118 6.28946 6.47652 6.97902
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C -0.230 4.230
3 C 0.103 3.897
4 C -0.041 4.041
5 O -0.535 6.535
6 Si 0.718 3.282
7 N -0.538 5.538
8 C 0.321 3.679
9 N -0.676 5.676
10 C 0.126 3.874
11 H 0.098 0.902
12 C -0.133 4.133
13 C -0.072 4.072
14 H 0.104 0.896
15 C -0.059 4.059
16 C -0.109 4.109
17 C -0.032 4.032
18 Cl -0.068 7.068
19 C -0.114 4.114
20 C -0.103 4.103
21 C -0.111 4.111
22 C -0.149 4.149
23 S 0.101 5.899
24 H 0.056 0.944
25 H 0.071 0.929
26 H 0.087 0.913
27 H 0.081 0.919
28 H 0.382 0.618
29 H -0.263 1.263
30 H -0.265 1.265
31 H 0.414 0.586
32 H 0.083 0.917
33 H 0.102 0.898
34 H 0.134 0.866
35 H 0.133 0.867
36 H 0.133 0.867
37 H 0.129 0.871
38 H 0.099 0.901
39 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.982 0.383 1.535 2.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.352 4.352
3 C -0.026 4.026
4 C -0.153 4.153
5 O -0.342 6.342
6 Si 0.619 3.381
7 N -0.264 5.264
8 C -0.050 4.050
9 N -0.317 5.317
10 C 0.019 3.981
11 H 0.116 0.884
12 C -0.171 4.171
13 C -0.090 4.090
14 H 0.122 0.878
15 C -0.060 4.060
16 C -0.128 4.128
17 C -0.058 4.058
18 Cl -0.039 7.039
19 C -0.133 4.133
20 C -0.122 4.122
21 C -0.129 4.129
22 C -0.188 4.188
23 S 0.350 5.650
24 H 0.075 0.925
25 H 0.090 0.910
26 H 0.105 0.895
27 H 0.099 0.901
28 H 0.230 0.770
29 H -0.187 1.187
30 H -0.191 1.191
31 H 0.252 0.748
32 H 0.101 0.899
33 H 0.121 0.879
34 H 0.152 0.848
35 H 0.151 0.849
36 H 0.151 0.849
37 H 0.147 0.853
38 H 0.117 0.883
39 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 2.453 -0.723 0.800 2.679
hybrid contribution -0.966 1.067 0.011 1.439
sum 1.487 0.344 0.811 1.728
Atomic orbital electron populations
1.20088 0.86524 1.01380 1.03698 1.25133 1.01401 0.92687 1.15987
1.18710 0.86501 0.94966 1.02460 1.23990 0.92110 0.97774 1.01466
1.86540 1.33242 1.35040 1.79368 0.93705 0.87361 0.75010 0.82056
1.65582 1.16853 1.16604 1.27388 1.23133 0.91674 0.91272 0.98932
1.43519 1.01790 1.06062 1.80295 1.21988 0.98500 0.79974 0.97626
0.88406 1.23438 0.93769 1.03619 0.96267 1.21589 0.92878 0.97920
0.96606 0.87803 1.19609 0.94548 0.93180 0.98638 1.20891 0.99363
0.91609 1.00910 1.20948 0.95204 0.85536 1.04136 1.98397 1.93140
1.15384 1.97028 1.21127 0.94828 0.97051 1.00309 1.21167 1.00030
0.92073 0.98893 1.21199 0.92711 1.00094 0.98888 1.23727 0.94561
1.02624 0.97867 1.83965 0.96446 1.10523 1.74050 0.92462 0.91014
0.89489 0.90090 0.76988 1.18730 1.19080 0.74762 0.89863 0.87923
0.84842 0.84882 0.84900 0.85313 0.88300 0.90023
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.09 8.91 36.01 0.32 0.24 16
2 C -0.23 -0.68 6.50 -36.02 -0.23 -0.92 16
3 C 0.10 0.35 5.95 -84.18 -0.50 -0.15 16
4 C -0.04 -0.06 2.93 36.01 0.11 0.05 16
5 O -0.53 -0.49 9.80 -35.23 -0.35 -0.83 16
6 Si 0.72 0.97 32.09 -169.99 -5.45 -4.48 16
7 N -0.54 -1.72 8.95 -11.36 -0.10 -1.82 16
8 C 0.32 0.56 8.24 -87.68 -0.72 -0.16 16
9 N -0.68 0.68 5.42 -54.90 -0.30 0.39 16
10 C 0.13 -0.32 4.32 -67.02 -0.29 -0.61 16
11 H 0.10 -0.23 7.06 -51.93 -0.37 -0.60 16
12 C -0.13 0.44 7.29 -25.92 -0.19 0.25 16
13 C -0.07 0.22 3.86 -90.96 -0.35 -0.13 16
14 H 0.10 -0.38 8.09 -51.93 -0.42 -0.80 16
15 C -0.06 0.09 5.29 -104.63 -0.55 -0.47 16
16 C -0.11 0.08 8.41 -39.55 -0.33 -0.25 16
17 C -0.03 -0.01 6.32 -39.50 -0.25 -0.26 16
18 Cl -0.07 -0.07 28.96 -51.86 -1.50 -1.57 16
19 C -0.11 0.02 9.83 -39.55 -0.39 -0.37 16
20 C -0.10 0.12 10.05 -39.59 -0.40 -0.28 16
21 C -0.11 0.16 9.71 -39.58 -0.38 -0.23 16
22 C -0.15 0.41 7.26 -25.82 -0.19 0.23 16
23 S 0.10 0.14 21.69 -107.50 -2.33 -2.19 16
24 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16
25 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16
26 H 0.09 0.17 6.73 -51.93 -0.35 -0.18 16
27 H 0.08 -0.01 7.96 -51.93 -0.41 -0.43 16
28 H 0.38 -1.18 8.74 45.56 0.40 -0.79 16
29 H -0.26 -1.40 7.11 56.52 0.40 -0.99 16
30 H -0.27 -0.61 7.11 56.52 0.40 -0.21 16
31 H 0.41 -0.84 8.83 -40.82 -0.36 -1.20 16
32 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16
33 H 0.10 -0.35 7.73 -51.93 -0.40 -0.76 16
34 H 0.13 -0.26 6.64 -52.49 -0.35 -0.61 16
35 H 0.13 -0.17 8.06 -52.49 -0.42 -0.59 16
36 H 0.13 -0.39 8.06 -52.49 -0.42 -0.82 16
37 H 0.13 -0.40 8.05 -52.49 -0.42 -0.82 16
38 H 0.10 -0.31 6.30 -51.93 -0.33 -0.64 16
39 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16
LS Contribution 350.81 15.07 5.29 5.29
Total: 0.00 -5.88 350.81 -13.85 -19.73
By element:
Atomic # 1 Polarization: -6.69 SS G_CDS: -4.75 Total: -11.44 kcal
Atomic # 6 Polarization: 1.28 SS G_CDS: -4.35 Total: -3.07 kcal
Atomic # 7 Polarization: -1.04 SS G_CDS: -0.40 Total: -1.44 kcal
Atomic # 8 Polarization: -0.49 SS G_CDS: -0.35 Total: -0.83 kcal
Atomic # 14 Polarization: 0.97 SS G_CDS: -5.45 Total: -4.48 kcal
Atomic # 16 Polarization: 0.14 SS G_CDS: -2.33 Total: -2.19 kcal
Atomic # 17 Polarization: -0.07 SS G_CDS: -1.50 Total: -1.57 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -5.88 -13.85 -19.73 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9705208_15704122.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.276 kcal
(2) G-P(sol) polarization free energy of solvation -5.884 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.392 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.846 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.730 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.546 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds