Wall clock time and date at job start Mon Mar 8 2021 10:31:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42898 * 1
3 3 Si 1.86292 * 109.47378 * 2 1
4 4 C 1.50709 * 109.47178 * 120.00132 * 2 1 3
5 5 C 1.38603 * 120.72338 * 64.99516 * 4 2 1
6 6 N 1.32270 * 119.20103 * 180.02562 * 5 4 2
7 7 C 1.32501 * 120.73687 * 359.97438 * 6 5 4
8 8 N 1.38404 * 119.21275 * 179.97438 * 7 6 5
9 9 C 1.46506 * 119.99573 * 180.02562 * 8 7 6
10 10 H 1.08993 * 112.85127 * 336.19947 * 9 8 7
11 11 C 1.53786 * 113.61017 * 107.50858 * 9 8 7
12 12 C 1.53780 * 87.08292 * 89.11397 * 11 9 8
13 13 H 1.08992 * 113.69153 * 270.87353 * 12 11 9
14 14 C 1.50696 * 113.61396 * 139.97857 * 12 11 9
15 15 C 1.38225 * 119.98661 * 322.23078 * 14 12 11
16 16 C 1.38270 * 120.05084 * 179.72837 * 15 14 12
17 17 C 1.38179 * 120.02468 * 0.54526 * 16 15 14
18 18 C 1.38484 * 119.97039 * 359.72742 * 17 16 15
19 19 F 1.35098 * 120.02226 * 179.97438 * 18 17 16
20 20 C 1.38215 * 119.98732 * 142.50236 * 14 12 11
21 21 C 1.53780 * 113.61267 * 205.00064 * 9 8 7
22 22 N 1.32487 * 121.56643 * 0.27797 * 7 6 5
23 23 C 1.32282 * 120.73942 * 359.44509 * 22 7 6
24 24 H 0.96708 * 113.99568 * 299.99937 * 1 2 3
25 25 H 1.08997 * 109.47042 * 239.99493 * 2 1 3
26 26 H 1.48499 * 110.00168 * 178.68244 * 3 2 1
27 27 H 1.48503 * 110.00234 * 299.99869 * 3 2 1
28 28 H 1.08001 * 120.39533 * 0.02562 * 5 4 2
29 29 H 0.96995 * 120.00318 * 0.27899 * 8 7 6
30 30 H 1.09002 * 113.60822 * 203.66522 * 11 9 8
31 31 H 1.08998 * 113.61367 * 334.56303 * 11 9 8
32 32 H 1.08004 * 119.97507 * 359.97438 * 15 14 12
33 33 H 1.07997 * 119.98832 * 180.27595 * 16 15 14
34 34 H 1.07997 * 120.01073 * 179.70713 * 17 16 15
35 35 H 1.07995 * 120.01686 * 359.97438 * 20 14 12
36 36 H 1.09001 * 113.61558 * 25.44031 * 21 9 8
37 37 H 1.09003 * 113.61114 * 156.25465 * 21 9 8
38 38 H 1.08002 * 120.39989 * 180.29699 * 23 22 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0500 1.7563 0.0000
4 6 1.9314 -0.7105 1.2305
5 6 1.6926 -2.0634 1.4141
6 7 2.1469 -2.6565 2.5056
7 6 2.8233 -1.9723 3.4166
8 7 3.2837 -2.6246 4.5471
9 6 4.0331 -1.8845 5.5656
10 1 4.5143 -0.9900 5.1704
11 6 3.2372 -1.6383 6.8582
12 6 3.7840 -2.9857 7.3585
13 1 3.1594 -3.8381 7.0917
14 6 4.1710 -2.9768 8.8149
15 6 4.7666 -1.8571 9.3647
16 6 5.1171 -1.8454 10.7022
17 6 4.8826 -2.9575 11.4881
18 6 4.2911 -4.0819 10.9370
19 9 4.0618 -5.1699 11.7043
20 6 3.9354 -4.0903 9.5991
21 6 4.9706 -2.7689 6.4045
22 7 3.0643 -0.6774 3.2738
23 6 2.6425 -0.0252 2.2030
24 1 -0.3933 0.4417 0.7651
25 1 1.7923 -0.5139 -0.8899
26 1 3.5346 1.7702 0.0321
27 1 1.5616 2.4679 -1.2085
28 1 1.1422 -2.6264 0.6749
29 1 3.1135 -3.5723 4.6634
30 1 3.5917 -0.7826 7.4329
31 1 2.1571 -1.6327 6.7116
32 1 4.9547 -0.9892 8.7500
33 1 5.5783 -0.9684 11.1317
34 1 5.1607 -2.9499 12.5316
35 1 3.4738 -4.9665 9.1685
36 1 5.2899 -3.6761 5.8916
37 1 5.7998 -2.2226 6.8540
38 1 2.8462 1.0294 2.0899
There are 54 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 54
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_27_9705264_12175864.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 10:31:35
Heat of formation + Delta-G solvation = 45.427811 kcal
Electronic energy + Delta-G solvation = -23031.070349 eV
Core-core repulsion = 19370.083408 eV
Total energy + Delta-G solvation = -3660.986941 eV
No. of doubly occupied orbitals = 54
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 302.117 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-49.93961 -42.16083 -41.12458 -39.12447 -37.92782 -35.49227 -34.72978 -32.60571
-31.76808 -31.03493 -27.00401 -26.68659 -26.11670 -25.54238 -23.77666 -23.30089
-22.61727 -20.35215 -19.58457 -18.64854 -18.15953 -17.97741 -17.35867 -17.06022
-16.64851 -16.59343 -16.33965 -16.13896 -16.01141 -15.52993 -15.36061 -15.03161
-14.60856 -14.49521 -14.20726 -14.07198 -13.87727 -13.49866 -13.15396 -13.08706
-12.77315 -12.68350 -12.25041 -11.92344 -11.89673 -11.79185 -11.71812 -11.28279
-11.10781 -10.53205 -10.03382 -9.90727 -9.61534 -9.10320 -4.97870 0.04807
0.13336 0.16169 0.23868 1.33695 1.66213 1.78690 2.01109 2.57450
2.78240 3.14754 3.22889 3.47512 3.55486 3.63119 3.67847 3.70377
3.74454 3.81362 3.87944 3.98904 4.12023 4.16274 4.24497 4.26365
4.42877 4.56943 4.66036 4.74987 4.80181 4.83687 4.93292 4.95612
5.04728 5.11265 5.14061 5.18476 5.35482 5.39460 5.57640 5.80519
5.93753 6.04876 6.39102 6.79763 7.26287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.555 6.555
2 C -0.049 4.049
3 Si 0.770 3.230
4 C -0.288 4.288
5 C 0.211 3.789
6 N -0.592 5.592
7 C 0.555 3.445
8 N -0.676 5.676
9 C 0.136 3.864
10 H 0.107 0.893
11 C -0.136 4.136
12 C -0.073 4.073
13 H 0.099 0.901
14 C -0.044 4.044
15 C -0.126 4.126
16 C -0.088 4.088
17 C -0.169 4.169
18 C 0.071 3.929
19 F -0.156 7.156
20 C -0.164 4.164
21 C -0.127 4.127
22 N -0.573 5.573
23 C 0.196 3.804
24 H 0.395 0.605
25 H 0.113 0.887
26 H -0.283 1.283
27 H -0.298 1.298
28 H 0.180 0.820
29 H 0.417 0.583
30 H 0.111 0.889
31 H 0.063 0.937
32 H 0.155 0.845
33 H 0.158 0.842
34 H 0.142 0.858
35 H 0.136 0.864
36 H 0.077 0.923
37 H 0.112 0.888
38 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.931 4.859 0.630 4.988
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.363 6.363
2 C -0.160 4.160
3 Si 0.676 3.324
4 C -0.296 4.296
5 C 0.044 3.956
6 N -0.315 5.315
7 C 0.198 3.802
8 N -0.311 5.311
9 C 0.030 3.970
10 H 0.125 0.875
11 C -0.175 4.175
12 C -0.091 4.091
13 H 0.117 0.883
14 C -0.044 4.044
15 C -0.144 4.144
16 C -0.105 4.105
17 C -0.188 4.188
18 C 0.052 3.948
19 F -0.135 7.135
20 C -0.182 4.182
21 C -0.165 4.165
22 N -0.295 5.295
23 C 0.029 3.971
24 H 0.245 0.755
25 H 0.130 0.870
26 H -0.209 1.209
27 H -0.225 1.225
28 H 0.197 0.803
29 H 0.255 0.745
30 H 0.129 0.871
31 H 0.081 0.919
32 H 0.173 0.827
33 H 0.175 0.825
34 H 0.160 0.840
35 H 0.154 0.846
36 H 0.096 0.904
37 H 0.131 0.869
38 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges 1.927 4.695 0.693 5.123
hybrid contribution -0.480 -1.278 -0.626 1.502
sum 1.448 3.417 0.067 3.712
Atomic orbital electron populations
1.86484 1.17253 1.82090 1.50448 1.24826 0.85109 1.10247 0.95822
0.93964 0.77879 0.75006 0.85556 1.21775 1.08626 0.97380 1.01803
1.23123 0.89245 0.91785 0.91472 1.67989 1.17472 1.40759 1.05251
1.19600 0.87380 0.85956 0.87260 1.43922 1.58074 1.11927 1.17212
1.21873 0.92603 0.95964 0.86562 0.87522 1.23586 1.00441 0.97224
0.96212 1.21624 0.98540 0.99590 0.89351 0.88302 1.19698 0.96524
0.92705 0.95462 1.21420 0.98640 0.98777 0.95516 1.21369 0.97612
0.97868 0.93692 1.21432 1.02035 0.93088 1.02230 1.18076 1.02269
0.84490 0.89931 1.91470 1.92890 1.53516 1.75596 1.21216 1.03948
1.00917 0.92154 1.23444 0.96706 1.00719 0.95654 1.67951 1.27477
1.08170 1.25900 1.23209 0.87578 1.00247 0.86078 0.75545 0.87003
1.20946 1.22529 0.80299 0.74489 0.87118 0.91852 0.82749 0.82458
0.84031 0.84601 0.90408 0.86946 0.79261
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.56 1.40 12.85 -148.98 -1.91 -0.51 16
2 C -0.05 0.17 2.83 71.24 0.20 0.37 16
3 Si 0.77 -3.86 29.88 68.60 2.05 -1.81 16
4 C -0.29 0.37 5.36 -19.69 -0.11 0.26 16
5 C 0.21 0.37 10.99 84.71 0.93 1.30 16
6 N -0.59 -3.15 10.46 -197.99 -2.07 -5.23 16
7 C 0.55 2.30 8.42 261.49 2.20 4.50 16
8 N -0.68 0.13 5.41 -327.92 -1.77 -1.64 16
9 C 0.14 -0.50 4.33 45.52 0.20 -0.30 16
10 H 0.11 -0.25 7.37 -2.39 -0.02 -0.26 16
11 C -0.14 0.65 7.25 31.12 0.23 0.88 16
12 C -0.07 0.34 3.86 -11.01 -0.04 0.30 16
13 H 0.10 -0.44 8.09 -2.39 -0.02 -0.46 16
14 C -0.04 0.08 5.29 -19.87 -0.11 -0.03 16
15 C -0.13 0.49 8.60 22.27 0.19 0.68 16
16 C -0.09 0.26 10.04 22.26 0.22 0.48 16
17 C -0.17 -0.20 10.03 22.31 0.22 0.03 16
18 C 0.07 0.34 7.30 22.38 0.16 0.51 16
19 F -0.16 -1.33 17.27 44.97 0.78 -0.55 16
20 C -0.16 -0.33 9.69 22.31 0.22 -0.12 16
21 C -0.13 0.76 7.29 31.12 0.23 0.99 16
22 N -0.57 -1.64 9.13 -197.98 -1.81 -3.44 16
23 C 0.20 -0.24 9.92 84.71 0.84 0.60 16
24 H 0.39 -3.99 8.70 -74.05 -0.64 -4.63 16
25 H 0.11 -0.32 7.96 -2.39 -0.02 -0.34 16
26 H -0.28 0.08 7.11 99.48 0.71 0.79 16
27 H -0.30 -0.88 7.11 99.48 0.71 -0.17 16
28 H 0.18 -0.27 8.06 -2.91 -0.02 -0.29 16
29 H 0.42 -0.71 8.82 -92.71 -0.82 -1.53 16
30 H 0.11 -0.81 6.32 -2.39 -0.02 -0.83 16
31 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16
32 H 0.15 -1.38 6.67 -2.91 -0.02 -1.40 16
33 H 0.16 -1.27 8.06 -2.91 -0.02 -1.29 16
34 H 0.14 -0.17 8.06 -2.91 -0.02 -0.19 16
35 H 0.14 0.06 8.05 -2.91 -0.02 0.03 16
36 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16
37 H 0.11 -0.88 7.72 -2.39 -0.02 -0.90 16
38 H 0.19 -1.39 5.07 -2.91 -0.01 -1.41 16
Total: 0.00 -16.73 325.65 0.55 -16.18
By element:
Atomic # 1 Polarization: -13.14 SS G_CDS: -0.30 Total: -13.44 kcal
Atomic # 6 Polarization: 4.86 SS G_CDS: 5.59 Total: 10.45 kcal
Atomic # 7 Polarization: -4.66 SS G_CDS: -5.65 Total: -10.31 kcal
Atomic # 8 Polarization: 1.40 SS G_CDS: -1.91 Total: -0.51 kcal
Atomic # 9 Polarization: -1.33 SS G_CDS: 0.78 Total: -0.55 kcal
Atomic # 14 Polarization: -3.86 SS G_CDS: 2.05 Total: -1.81 kcal
Total: -16.73 0.55 -16.18 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9705264_12175864.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.608 kcal
(2) G-P(sol) polarization free energy of solvation -16.727 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.881 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.180 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.428 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds