Wall clock time and date at job start Mon Mar 8 2021 10:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47277 * 2 1 4 4 C 1.50705 * 109.47312 * 240.00104 * 2 1 3 5 5 C 1.37975 * 120.32708 * 119.99683 * 4 2 1 6 6 N 1.32013 * 120.90234 * 179.97438 * 5 4 2 7 7 C 1.32341 * 121.64441 * 0.02562 * 6 5 4 8 8 N 1.39142 * 119.71656 * 179.97438 * 7 6 5 9 9 C 1.46501 * 120.00261 * 0.02562 * 8 7 6 10 10 H 1.09002 * 112.84580 * 336.19685 * 9 8 7 11 11 C 1.53782 * 113.61292 * 107.49667 * 9 8 7 12 12 C 1.53787 * 87.07567 * 89.11883 * 11 9 8 13 13 H 1.08994 * 113.69274 * 270.87348 * 12 11 9 14 14 C 1.50700 * 113.61295 * 139.97915 * 12 11 9 15 15 C 1.38214 * 120.00249 * 322.50359 * 14 12 11 16 16 C 1.38256 * 120.00160 * 179.97438 * 15 14 12 17 17 C 1.38211 * 120.00062 * 0.26318 * 16 15 14 18 18 C 1.38258 * 119.99784 * 359.47854 * 17 16 15 19 19 C 1.50707 * 120.00006 * 180.25721 * 18 17 16 20 20 F 1.39894 * 109.47189 * 270.23588 * 19 18 17 21 21 F 1.39897 * 109.46885 * 30.24166 * 19 18 17 22 22 F 1.39902 * 109.46819 * 150.23817 * 19 18 17 23 23 C 1.38211 * 120.00113 * 0.49766 * 18 17 16 24 24 C 1.53771 * 113.61772 * 205.00027 * 9 8 7 25 25 C 1.39345 * 120.56374 * 0.25414 * 7 6 5 26 26 F 1.35094 * 120.46943 * 179.71873 * 25 7 6 27 27 C 1.38449 * 119.05330 * 359.49608 * 25 7 6 28 28 H 0.96698 * 113.99939 * 60.00478 * 1 2 3 29 29 H 1.08999 * 109.47360 * 120.00329 * 2 1 3 30 30 H 1.48505 * 109.99697 * 298.68265 * 3 2 1 31 31 H 1.48504 * 109.99859 * 59.99759 * 3 2 1 32 32 H 1.07997 * 119.55343 * 0.02562 * 5 4 2 33 33 H 0.96998 * 119.99686 * 180.02562 * 8 7 6 34 34 H 1.08998 * 113.61874 * 334.57858 * 11 9 8 35 35 H 1.08991 * 113.61614 * 203.66661 * 11 9 8 36 36 H 1.07999 * 119.99762 * 359.97438 * 15 14 12 37 37 H 1.08002 * 119.99676 * 179.97438 * 16 15 14 38 38 H 1.07998 * 120.00348 * 179.72205 * 17 16 15 39 39 H 1.08001 * 120.00363 * 179.76462 * 23 18 17 40 40 H 1.08999 * 113.61750 * 156.33808 * 24 9 8 41 41 H 1.09005 * 113.69283 * 25.44261 * 24 9 8 42 42 H 1.08001 * 120.75664 * 180.24081 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7250 -0.0463 -2.1431 6 7 3.1717 -0.6577 -3.2245 7 6 2.8792 -1.9233 -3.4774 8 7 3.3713 -2.5280 -4.6300 9 6 4.2097 -1.7640 -5.5572 10 1 4.0494 -0.6883 -5.4845 11 6 5.6923 -2.1713 -5.5253 12 6 5.3490 -3.2092 -6.6070 13 1 5.0366 -4.1732 -6.2056 14 6 6.4011 -3.3347 -7.6787 15 6 7.0697 -2.2107 -8.1258 16 6 8.0352 -2.3259 -9.1086 17 6 8.3281 -3.5643 -9.6479 18 6 7.6631 -4.6894 -9.1969 19 6 7.9865 -6.0406 -9.7808 20 9 7.1647 -6.2792 -10.8874 21 9 9.3268 -6.0670 -10.1808 22 9 7.7683 -7.0298 -8.8159 23 6 6.6982 -4.5743 -8.2140 24 6 4.1757 -2.2959 -6.9996 25 6 2.0779 -2.6539 -2.6023 26 9 1.7759 -3.9441 -2.8652 27 6 1.5996 -2.0400 -1.4572 28 1 -0.3933 0.4416 -0.7651 29 1 1.7924 -0.5139 0.8899 30 1 1.5879 2.4585 -1.2243 31 1 1.5615 2.4679 1.2085 32 1 2.9850 0.9875 -1.9701 33 1 3.1591 -3.4553 -4.8195 34 1 6.0034 -2.6137 -4.5790 35 1 6.3677 -1.3884 -5.8701 36 1 6.8378 -1.2424 -7.7074 37 1 8.5573 -1.4474 -9.4583 38 1 9.0791 -3.6537 -10.4188 39 1 6.1760 -5.4527 -7.8644 40 1 4.4366 -1.5470 -7.7474 41 1 3.2629 -2.8389 -7.2448 42 1 0.9796 -2.5815 -0.7581 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9705320_17656566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:32:03 Heat of formation + Delta-G solvation = -126.097509 kcal Electronic energy + Delta-G solvation = -32014.539099 eV Core-core repulsion = 26847.640627 eV Total energy + Delta-G solvation = -5166.898472 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.109 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -51.09855 -49.91048 -48.61676 -48.56030 -41.76805 -41.17381 -39.56195 -38.08041 -35.64300 -33.31218 -32.98387 -32.47779 -30.99512 -27.20190 -26.97807 -26.79593 -26.15446 -24.80565 -23.53872 -23.06062 -22.51360 -20.51407 -19.60691 -19.42862 -19.29511 -19.08490 -18.49916 -18.22832 -17.60012 -17.45993 -17.01590 -16.79318 -16.41851 -16.16314 -16.10554 -15.86442 -15.50129 -15.47801 -15.42056 -15.13503 -15.01775 -14.88944 -14.71533 -14.67434 -14.57122 -14.36000 -14.34020 -14.03017 -13.83343 -13.63423 -13.46861 -13.42074 -12.99415 -12.72733 -12.49198 -12.12209 -12.09398 -12.01079 -11.43849 -11.23800 -10.83888 -10.65733 -10.57809 -10.32454 -9.93334 -8.83601 -5.04343 -0.18683 -0.11424 0.06804 0.10486 1.18514 1.51322 1.67919 1.84145 1.89865 2.31079 2.49845 2.72757 2.98729 3.01806 3.16060 3.29521 3.32373 3.43657 3.50726 3.52542 3.55674 3.67219 3.77807 3.79537 3.87778 3.91611 3.96253 4.07870 4.25809 4.39661 4.41831 4.48642 4.52654 4.56121 4.66009 4.68481 4.74394 4.81872 4.88783 4.93294 4.98119 5.05243 5.16632 5.33247 5.39287 5.62275 5.90641 6.10472 6.31876 6.89466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.530 6.530 2 C -0.062 4.062 3 Si 0.682 3.318 4 C -0.207 4.207 5 C 0.148 3.852 6 N -0.510 5.510 7 C 0.393 3.607 8 N -0.700 5.700 9 C 0.134 3.866 10 H 0.111 0.889 11 C -0.144 4.144 12 C -0.076 4.076 13 H 0.100 0.900 14 C -0.071 4.071 15 C -0.085 4.085 16 C -0.116 4.116 17 C -0.075 4.075 18 C -0.179 4.179 19 C 0.507 3.493 20 F -0.176 7.176 21 F -0.176 7.176 22 F -0.177 7.177 23 C -0.068 4.068 24 C -0.138 4.138 25 C -0.019 4.019 26 F -0.133 7.133 27 C -0.038 4.038 28 H 0.377 0.623 29 H 0.121 0.879 30 H -0.256 1.256 31 H -0.254 1.254 32 H 0.164 0.836 33 H 0.413 0.587 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 4.081 0.533 4.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.336 6.336 2 C -0.173 4.173 3 Si 0.583 3.417 4 C -0.212 4.212 5 C -0.009 4.009 6 N -0.227 5.227 7 C 0.154 3.846 8 N -0.332 5.332 9 C 0.028 3.972 10 H 0.129 0.871 11 C -0.183 4.183 12 C -0.095 4.095 13 H 0.118 0.882 14 C -0.071 4.071 15 C -0.102 4.102 16 C -0.134 4.134 17 C -0.093 4.093 18 C -0.181 4.181 19 C 0.453 3.547 20 F -0.157 7.157 21 F -0.158 7.158 22 F -0.158 7.158 23 C -0.086 4.086 24 C -0.177 4.177 25 C -0.046 4.046 26 F -0.112 7.112 27 C -0.064 4.064 28 H 0.224 0.776 29 H 0.138 0.862 30 H -0.181 1.181 31 H -0.178 1.178 32 H 0.181 0.819 33 H 0.250 0.750 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.959 5.079 0.341 5.454 hybrid contribution -1.589 -1.719 -0.255 2.355 sum 0.370 3.360 0.087 3.381 Atomic orbital electron populations 1.86614 1.17680 1.79927 1.49376 1.24836 0.83917 1.10813 0.97685 0.95143 0.91526 0.74244 0.80808 1.20881 1.04744 0.95112 1.00476 1.22349 0.91621 0.99185 0.87750 1.67300 1.26383 1.07305 1.21683 1.18390 0.89962 0.89092 0.87107 1.44229 1.54132 1.14396 1.20466 1.21804 0.89864 0.97388 0.88138 0.87097 1.23615 0.97184 0.98554 0.98950 1.21645 0.94140 0.99374 0.94303 0.88227 1.19675 0.97480 0.92474 0.97461 1.21291 0.94594 0.98785 0.95571 1.21188 0.98031 0.97328 0.96806 1.20999 0.98004 0.91574 0.98712 1.19979 1.03318 0.92181 1.02587 1.18321 0.74468 0.85799 0.76082 1.93239 1.72491 1.95284 1.54721 1.93203 1.34617 1.96844 1.91101 1.93203 1.94465 1.64773 1.63372 1.20856 0.95171 0.98399 0.94168 1.23480 0.98310 0.99358 0.96505 1.18000 1.06732 0.81049 0.98798 1.91496 1.92074 1.33745 1.93905 1.21293 0.96208 0.94284 0.94601 0.77570 0.86173 1.18067 1.17832 0.81949 0.74995 0.90530 0.88518 0.84784 0.84542 0.84617 0.84771 0.88153 0.90386 0.83249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.01 12.78 -35.23 -0.45 -0.46 16 2 C -0.06 0.10 2.84 36.01 0.10 0.20 16 3 Si 0.68 -1.61 29.82 -169.99 -5.07 -6.68 16 4 C -0.21 0.19 5.40 -104.47 -0.56 -0.38 16 5 C 0.15 -0.12 9.84 -17.57 -0.17 -0.30 16 6 N -0.51 -0.33 9.13 -12.37 -0.11 -0.44 16 7 C 0.39 0.26 7.49 -154.86 -1.16 -0.90 16 8 N -0.70 0.74 5.41 -53.06 -0.29 0.45 16 9 C 0.13 -0.29 4.35 -67.12 -0.29 -0.58 16 10 H 0.11 -0.15 7.41 -51.93 -0.38 -0.54 16 11 C -0.14 0.38 7.25 -25.92 -0.19 0.19 16 12 C -0.08 0.20 3.86 -90.96 -0.35 -0.15 16 13 H 0.10 -0.28 8.09 -51.93 -0.42 -0.70 16 14 C -0.07 0.10 5.29 -104.62 -0.55 -0.45 16 15 C -0.08 0.18 8.61 -39.58 -0.34 -0.16 16 16 C -0.12 0.21 10.05 -39.58 -0.40 -0.19 16 17 C -0.07 0.04 9.40 -39.58 -0.37 -0.34 16 18 C -0.18 -0.11 5.45 -104.62 -0.57 -0.68 16 19 C 0.51 0.88 3.36 36.01 0.12 1.00 16 20 F -0.18 -0.46 17.30 2.25 0.04 -0.42 16 21 F -0.18 -0.40 16.47 2.25 0.04 -0.36 16 22 F -0.18 -0.41 16.46 2.25 0.04 -0.37 16 23 C -0.07 0.02 9.06 -39.58 -0.36 -0.34 16 24 C -0.14 0.42 7.29 -25.92 -0.19 0.23 16 25 C -0.02 -0.02 7.35 -39.09 -0.29 -0.31 16 26 F -0.13 -0.22 16.65 2.25 0.04 -0.18 16 27 C -0.04 0.00 9.75 -39.26 -0.38 -0.39 16 28 H 0.38 -1.02 8.70 45.56 0.40 -0.62 16 29 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 30 H -0.26 0.14 7.11 56.52 0.40 0.54 16 31 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 32 H 0.16 -0.50 4.88 -52.49 -0.26 -0.75 16 33 H 0.41 -0.78 8.17 -40.82 -0.33 -1.12 16 34 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 35 H 0.10 -0.33 6.31 -51.93 -0.33 -0.66 16 36 H 0.13 -0.55 6.66 -52.49 -0.35 -0.90 16 37 H 0.14 -0.52 8.06 -52.49 -0.42 -0.94 16 38 H 0.14 -0.21 7.61 -52.49 -0.40 -0.61 16 39 H 0.13 -0.15 7.60 -52.49 -0.40 -0.55 16 40 H 0.10 -0.36 7.72 -51.93 -0.40 -0.76 16 41 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 42 H 0.15 -0.10 8.06 -52.49 -0.42 -0.52 16 LS Contribution 368.38 15.07 5.55 5.55 Total: 0.00 -5.99 368.38 -10.35 -16.33 By element: Atomic # 1 Polarization: -5.71 SS G_CDS: -4.18 Total: -9.88 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -5.96 Total: -3.53 kcal Atomic # 7 Polarization: 0.40 SS G_CDS: -0.40 Total: 0.00 kcal Atomic # 8 Polarization: -0.01 SS G_CDS: -0.45 Total: -0.46 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.15 Total: -1.34 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: -5.07 Total: -6.68 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -5.99 -10.35 -16.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705320_17656566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.763 kcal (2) G-P(sol) polarization free energy of solvation -5.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds