Wall clock time and date at job start Mon Mar 8 2021 10:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 C 1.50701 * 109.46937 * 239.99996 * 2 1 3 5 5 C 1.38602 * 120.71960 * 119.72407 * 4 2 1 6 6 N 1.32277 * 119.19213 * 179.71559 * 5 4 2 7 7 C 1.32497 * 120.74552 * 0.56645 * 6 5 4 8 8 N 1.38397 * 119.21871 * 179.72820 * 7 6 5 9 9 C 1.46504 * 120.00267 * 359.97438 * 8 7 6 10 10 H 1.08996 * 112.84669 * 334.66265 * 9 8 7 11 11 C 1.53777 * 113.61337 * 105.86293 * 9 8 7 12 12 C 1.54055 * 86.98663 * 89.16213 * 11 9 8 13 13 H 1.08996 * 113.61075 * 270.88480 * 12 11 9 14 14 C 1.50700 * 113.69516 * 139.98684 * 12 11 9 15 15 C 1.38206 * 119.97425 * 322.19215 * 14 12 11 16 16 C 1.38483 * 120.02372 * 179.76700 * 15 14 12 17 17 F 1.35096 * 120.01459 * 180.24891 * 16 15 14 18 18 C 1.38416 * 119.97257 * 0.48902 * 16 15 14 19 19 C 1.38424 * 119.95105 * 359.76286 * 18 16 15 20 20 F 1.35093 * 120.01129 * 180.02562 * 19 18 16 21 21 C 1.38203 * 119.97236 * 142.46906 * 14 12 11 22 22 C 1.53778 * 113.61307 * 203.47158 * 9 8 7 23 23 N 1.32496 * 121.56046 * 359.70871 * 7 6 5 24 24 C 1.32273 * 120.74398 * 359.97438 * 23 7 6 25 25 H 0.96705 * 113.99788 * 60.00015 * 1 2 3 26 26 H 1.09001 * 109.47103 * 120.00361 * 2 1 3 27 27 H 1.48498 * 109.99736 * 298.68176 * 3 2 1 28 28 H 1.48493 * 110.00101 * 59.99933 * 3 2 1 29 29 H 1.07995 * 120.40299 * 0.02562 * 5 4 2 30 30 H 0.97002 * 119.99915 * 179.97438 * 8 7 6 31 31 H 1.09002 * 113.61410 * 203.66640 * 11 9 8 32 32 H 1.09001 * 113.61723 * 334.56942 * 11 9 8 33 33 H 1.07994 * 119.99200 * 359.97438 * 15 14 12 34 34 H 1.07996 * 120.02913 * 179.79069 * 18 16 15 35 35 H 1.07998 * 119.99161 * 359.97438 * 21 14 12 36 36 H 1.08998 * 113.61833 * 25.43422 * 22 9 8 37 37 H 1.09002 * 113.61490 * 156.25560 * 22 9 8 38 38 H 1.07991 * 120.40395 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7243 -0.0496 -2.1554 6 7 3.1533 -0.7040 -3.2220 7 6 2.8237 -1.9726 -3.4163 8 7 3.2855 -2.6251 -4.5460 9 6 4.1277 -1.9132 -5.5104 10 1 3.9717 -0.8346 -5.4934 11 6 5.6090 -2.3223 -5.4546 12 6 5.2619 -3.4149 -6.4837 13 1 4.9454 -4.3551 -6.0322 14 6 6.3132 -3.6011 -7.5472 15 6 6.9823 -2.5041 -8.0563 16 6 7.9519 -2.6745 -9.0302 17 9 8.6093 -1.6025 -9.5241 18 6 8.2438 -3.9430 -9.5009 19 6 7.5695 -5.0404 -8.9940 20 9 7.8538 -6.2790 -9.4522 21 6 6.6036 -4.8681 -8.0168 22 6 4.0925 -2.5184 -6.9237 23 7 2.0629 -2.6312 -2.5544 24 6 1.6060 -2.0373 -1.4644 25 1 -0.3933 0.4417 -0.7651 26 1 1.7924 -0.5139 0.8900 27 1 1.5880 2.4585 -1.2242 28 1 1.5616 2.4679 1.2084 29 1 2.9929 0.9855 -2.0047 30 1 3.0514 -3.5539 -4.6993 31 1 6.2873 -1.5604 -5.8387 32 1 5.9173 -2.7153 -4.4857 33 1 6.7511 -1.5140 -7.6921 34 1 8.9975 -4.0765 -10.2628 35 1 6.0773 -5.7242 -7.6212 36 1 3.1773 -3.0693 -7.1401 37 1 4.3556 -1.8096 -7.7089 38 1 0.9866 -2.5796 -0.7654 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9705376_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:32:06 Heat of formation + Delta-G solvation = 2.848811 kcal Electronic energy + Delta-G solvation = -25234.380765 eV Core-core repulsion = 21102.093484 eV Total energy + Delta-G solvation = -4132.287280 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.108 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.08430 -50.05726 -42.15255 -41.14452 -39.10020 -38.06535 -35.50604 -34.71392 -32.61503 -31.55439 -31.23462 -27.09786 -26.70825 -26.15335 -25.63942 -23.96434 -23.34176 -22.82784 -20.46990 -19.63479 -18.94065 -18.44632 -18.13679 -18.02220 -17.43096 -17.05224 -16.79190 -16.57137 -16.37752 -16.32242 -16.24960 -15.97450 -15.67089 -15.44396 -15.31533 -14.79201 -14.51861 -14.11825 -14.01681 -13.71562 -13.49600 -13.15440 -13.07258 -12.98737 -12.79588 -12.28559 -12.03793 -11.90360 -11.89470 -11.71157 -11.29951 -11.15206 -10.65889 -10.04817 -9.91467 -9.81915 -9.09347 -4.89764 -0.10523 -0.09098 0.06017 0.14853 1.33437 1.62059 1.79831 2.00096 2.25154 2.77220 2.79027 3.15423 3.27212 3.39204 3.43068 3.58052 3.65796 3.70005 3.73090 3.76963 3.80065 3.91408 3.94618 4.07744 4.14394 4.25326 4.60680 4.65953 4.72414 4.74804 4.75471 4.79494 4.81141 4.90877 4.96886 4.98294 5.07237 5.12955 5.31066 5.44160 5.71171 5.81412 6.06603 6.41016 6.50319 7.28245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.056 4.056 3 Si 0.759 3.241 4 C -0.284 4.284 5 C 0.194 3.806 6 N -0.574 5.574 7 C 0.555 3.445 8 N -0.674 5.674 9 C 0.135 3.865 10 H 0.103 0.897 11 C -0.139 4.139 12 C -0.070 4.070 13 H 0.114 0.886 14 C -0.008 4.008 15 C -0.156 4.156 16 C 0.120 3.880 17 F -0.139 7.139 18 C -0.206 4.206 19 C 0.117 3.883 20 F -0.141 7.141 21 C -0.159 4.159 22 C -0.127 4.127 23 N -0.590 5.590 24 C 0.213 3.787 25 H 0.385 0.615 26 H 0.131 0.869 27 H -0.279 1.279 28 H -0.301 1.301 29 H 0.187 0.813 30 H 0.419 0.581 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 1.443 1.236 1.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.167 4.167 3 Si 0.664 3.336 4 C -0.292 4.292 5 C 0.027 3.973 6 N -0.296 5.296 7 C 0.198 3.802 8 N -0.310 5.310 9 C 0.029 3.971 10 H 0.121 0.879 11 C -0.178 4.178 12 C -0.089 4.089 13 H 0.132 0.868 14 C -0.009 4.009 15 C -0.175 4.175 16 C 0.100 3.900 17 F -0.117 7.117 18 C -0.225 4.225 19 C 0.097 3.903 20 F -0.119 7.119 21 C -0.177 4.177 22 C -0.165 4.165 23 N -0.313 5.313 24 C 0.045 3.955 25 H 0.235 0.765 26 H 0.149 0.851 27 H -0.206 1.206 28 H -0.229 1.229 29 H 0.204 0.796 30 H 0.257 0.743 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.180 0.820 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.103 0.897 37 H 0.128 0.872 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 0.575 1.553 0.749 1.818 hybrid contribution -1.129 -0.336 -0.164 1.189 sum -0.554 1.217 0.585 1.460 Atomic orbital electron populations 1.86590 1.18523 1.80220 1.50162 1.24855 0.83198 1.11136 0.97493 0.94307 0.90202 0.72196 0.76860 1.21694 1.07613 0.97906 1.02031 1.23186 0.88125 0.99732 0.86285 1.67962 1.28749 1.08468 1.24469 1.19610 0.87077 0.85988 0.87531 1.43887 1.53325 1.14543 1.19240 1.21846 0.89819 0.97573 0.87822 0.87853 1.23650 0.96895 0.98218 0.99023 1.21750 0.93538 0.99871 0.93704 0.86804 1.19452 0.95260 0.90824 0.95322 1.21275 0.96749 1.01896 0.97549 1.17411 0.94031 0.82656 0.95865 1.91534 1.79602 1.54051 1.86563 1.21184 1.04942 0.91099 1.05287 1.17462 0.97312 0.79213 0.96267 1.91526 1.92700 1.39853 1.87864 1.21356 0.98790 0.99686 0.97903 1.23441 0.98242 0.98895 0.95932 1.67993 1.16845 1.40034 1.06385 1.23123 0.90335 0.91277 0.90745 0.76544 0.85130 1.20588 1.22937 0.79631 0.74264 0.87588 0.91382 0.82025 0.83125 0.82481 0.89691 0.87183 0.80171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.42 12.79 -148.98 -1.91 -1.48 16 2 C -0.06 0.23 2.85 71.24 0.20 0.43 16 3 Si 0.76 -3.78 29.87 68.60 2.05 -1.73 16 4 C -0.28 0.55 5.40 -19.69 -0.11 0.44 16 5 C 0.19 -0.27 9.92 84.71 0.84 0.58 16 6 N -0.57 -1.37 9.15 -197.99 -1.81 -3.18 16 7 C 0.55 1.67 8.43 261.49 2.20 3.88 16 8 N -0.67 1.26 5.41 -327.94 -1.77 -0.51 16 9 C 0.14 -0.68 4.30 45.51 0.20 -0.48 16 10 H 0.10 -0.30 7.41 -2.39 -0.02 -0.32 16 11 C -0.14 0.86 7.27 31.21 0.23 1.09 16 12 C -0.07 0.52 3.87 -10.92 -0.04 0.48 16 13 H 0.11 -1.00 8.09 -2.39 -0.02 -1.02 16 14 C -0.01 0.03 5.29 -19.88 -0.11 -0.07 16 15 C -0.16 0.48 8.58 22.32 0.19 0.67 16 16 C 0.12 0.13 7.30 22.37 0.16 0.29 16 17 F -0.14 -0.51 17.27 44.97 0.78 0.27 16 18 C -0.21 -0.33 10.01 22.36 0.22 -0.11 16 19 C 0.12 0.20 7.30 22.37 0.16 0.36 16 20 F -0.14 -0.65 17.27 44.97 0.78 0.12 16 21 C -0.16 0.34 9.69 22.32 0.22 0.55 16 22 C -0.13 1.02 7.28 31.12 0.23 1.24 16 23 N -0.59 -2.41 10.46 -197.99 -2.07 -4.48 16 24 C 0.21 0.15 10.92 84.72 0.93 1.08 16 25 H 0.39 -2.22 8.70 -74.05 -0.64 -2.87 16 26 H 0.13 -0.80 7.96 -2.39 -0.02 -0.82 16 27 H -0.28 0.36 7.11 99.48 0.71 1.06 16 28 H -0.30 -0.99 7.11 99.48 0.71 -0.29 16 29 H 0.19 -1.24 5.04 -2.91 -0.01 -1.25 16 30 H 0.42 -1.68 8.82 -92.71 -0.82 -2.50 16 31 H 0.11 -0.81 6.34 -2.39 -0.02 -0.83 16 32 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.16 -1.13 6.68 -2.91 -0.02 -1.15 16 34 H 0.15 0.02 8.06 -2.91 -0.02 0.00 16 35 H 0.16 -0.87 8.05 -2.91 -0.02 -0.90 16 36 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.11 -1.00 7.72 -2.39 -0.02 -1.01 16 38 H 0.18 -0.46 8.06 -2.92 -0.02 -0.49 16 Total: 0.00 -15.18 332.04 1.28 -13.89 By element: Atomic # 1 Polarization: -13.06 SS G_CDS: -0.28 Total: -13.34 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.53 Total: 10.44 kcal Atomic # 7 Polarization: -2.51 SS G_CDS: -5.66 Total: -8.17 kcal Atomic # 8 Polarization: 0.42 SS G_CDS: -1.91 Total: -1.48 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 1.55 Total: 0.39 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.05 Total: -1.73 kcal Total: -15.18 1.28 -13.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9705376_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.741 kcal (2) G-P(sol) polarization free energy of solvation -15.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds