Wall clock time and date at job start Mon Mar 8 2021 07:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33332 * 125.94871 * 2 1 4 4 C 1.50699 * 122.71126 * 0.02562 * 3 2 1 5 5 O 1.42895 * 109.47158 * 329.99617 * 4 3 2 6 6 Si 1.86300 * 109.46944 * 210.00138 * 4 3 2 7 7 N 1.32120 * 114.57870 * 180.29191 * 3 2 1 8 8 C 1.29696 * 116.86596 * 359.48557 * 7 3 2 9 9 N 1.38601 * 124.94871 * 180.22407 * 8 7 3 10 10 C 1.46503 * 119.99851 * 180.27856 * 9 8 7 11 11 H 1.09000 * 112.84785 * 23.80344 * 10 9 8 12 12 C 1.53779 * 113.61408 * 155.00185 * 10 9 8 13 13 C 1.53783 * 87.07912 * 89.11928 * 12 10 9 14 14 H 1.09002 * 113.61515 * 270.87824 * 13 12 10 15 15 C 1.50703 * 113.61467 * 140.06570 * 13 12 10 16 16 C 1.38212 * 120.00096 * 119.99576 * 15 13 12 17 17 C 1.50703 * 119.99898 * 0.02562 * 16 15 13 18 18 C 1.38260 * 120.00154 * 179.97438 * 16 15 13 19 19 C 1.38210 * 119.99595 * 0.02562 * 18 16 15 20 20 C 1.38255 * 120.00445 * 359.97438 * 19 18 16 21 21 C 1.38210 * 119.99685 * 359.74888 * 20 19 18 22 22 C 1.53779 * 87.08614 * 25.43153 * 13 12 10 23 23 S 1.70970 * 110.09920 * 0.49168 * 8 7 3 24 24 H 1.08997 * 109.46927 * 90.00102 * 1 2 3 25 25 H 1.08998 * 109.46628 * 209.99994 * 1 2 3 26 26 H 1.09001 * 109.47212 * 330.00048 * 1 2 3 27 27 H 1.09000 * 109.47247 * 90.00070 * 4 3 2 28 28 H 0.96698 * 114.00355 * 300.00487 * 5 4 3 29 29 H 1.48506 * 110.00048 * 180.02562 * 6 4 3 30 30 H 1.48502 * 109.99996 * 301.31619 * 6 4 3 31 31 H 0.96998 * 120.00300 * 0.28110 * 9 8 7 32 32 H 1.09004 * 113.60992 * 203.66275 * 12 10 9 33 33 H 1.08995 * 113.61654 * 334.48766 * 12 10 9 34 34 H 1.08998 * 109.47260 * 89.99818 * 17 16 15 35 35 H 1.09003 * 109.47460 * 209.99749 * 17 16 15 36 36 H 1.08997 * 109.47176 * 330.00091 * 17 16 15 37 37 H 1.07999 * 119.99941 * 180.02562 * 18 16 15 38 38 H 1.08003 * 119.99217 * 179.97438 * 19 18 16 39 39 H 1.07996 * 119.99632 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.00174 * 180.27784 * 21 20 19 41 41 H 1.08997 * 113.61781 * 220.02252 * 22 13 12 42 42 H 1.08999 * 113.61100 * 89.11322 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0794 0.0000 4 6 1.7414 2.4830 0.0006 5 8 0.4811 2.5023 -0.6727 6 14 2.9319 3.6152 -0.8778 7 7 3.5850 0.8189 -0.0061 8 6 3.9316 -0.4309 -0.0009 9 7 5.2385 -0.8924 -0.0015 10 6 5.5066 -2.3327 -0.0014 11 1 4.6804 -2.9171 -0.4062 12 6 6.8745 -2.7046 -0.5974 13 6 7.4480 -2.5438 0.8204 14 1 7.7793 -1.5299 1.0450 15 6 8.4744 -3.5876 1.1785 16 6 9.7610 -3.2066 1.5098 17 6 10.1373 -1.7473 1.5137 18 6 10.7025 -4.1641 1.8389 19 6 10.3571 -5.5024 1.8359 20 6 9.0701 -5.8836 1.5044 21 6 8.1275 -4.9259 1.1810 22 6 6.0366 -2.8605 1.3424 23 16 2.5414 -1.4261 -0.0007 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6095 2.8212 1.0284 28 1 0.5230 2.2127 -1.5943 29 1 2.4029 5.0028 -0.8836 30 1 4.2559 3.5798 -0.2062 31 1 5.9755 -0.2619 -0.0019 32 1 6.9232 -3.7261 -0.9748 33 1 7.2545 -1.9719 -1.3092 34 1 9.9533 -1.3272 2.5025 35 1 11.1937 -1.6438 1.2657 36 1 9.5370 -1.2154 0.7756 37 1 11.7077 -3.8663 2.0982 38 1 11.0927 -6.2504 2.0925 39 1 8.8006 -6.9293 1.5017 40 1 7.1209 -5.2233 0.9265 41 1 5.7407 -2.2528 2.1975 42 1 5.8562 -3.9246 1.4952 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_9744654_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:13:59 Heat of formation + Delta-G solvation = 66.395105 kcal Electronic energy + Delta-G solvation = -23470.555396 eV Core-core repulsion = 20123.434560 eV Total energy + Delta-G solvation = -3347.120836 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60247 -40.90189 -39.44356 -37.70412 -35.37871 -33.83700 -32.65489 -31.52447 -29.16978 -27.93132 -26.92586 -26.25847 -25.50621 -24.32085 -23.20322 -22.02227 -20.70543 -20.37847 -18.81614 -17.97066 -17.83304 -17.15817 -16.86125 -16.54912 -16.23378 -16.00314 -15.56593 -15.45886 -15.06322 -14.91368 -14.63903 -14.19579 -14.10313 -14.04599 -13.74462 -13.61495 -13.60567 -13.33806 -13.28523 -12.95189 -12.84609 -12.65811 -12.31151 -12.12810 -11.91118 -11.81814 -11.62897 -11.35336 -11.02470 -10.52267 -10.27190 -9.95569 -9.72012 -9.47913 -8.60632 -4.82778 0.05217 0.20877 0.38846 0.44960 0.82515 1.41478 1.81293 1.91700 1.96913 2.27169 2.74861 3.23720 3.38270 3.43594 3.54807 3.57644 3.75594 3.90722 3.95758 4.07799 4.11337 4.18784 4.27417 4.36773 4.37741 4.47487 4.54689 4.56909 4.62122 4.65632 4.70571 4.79767 4.82309 4.82549 4.86940 4.93556 5.02341 5.12095 5.17592 5.20674 5.34687 5.55254 5.60189 5.64872 5.71638 6.07771 6.26220 6.52845 6.98815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.238 4.238 3 C 0.066 3.934 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.716 3.284 7 N -0.545 5.545 8 C 0.321 3.679 9 N -0.676 5.676 10 C 0.125 3.875 11 H 0.097 0.903 12 C -0.132 4.132 13 C -0.075 4.075 14 H 0.102 0.898 15 C -0.074 4.074 16 C -0.081 4.081 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.148 4.148 23 S 0.101 5.899 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.379 0.621 29 H -0.262 1.262 30 H -0.253 1.253 31 H 0.413 0.587 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 -3.383 -2.335 4.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.361 4.361 3 C -0.064 4.064 4 C -0.147 4.147 5 O -0.340 6.340 6 Si 0.617 3.383 7 N -0.271 5.271 8 C -0.050 4.050 9 N -0.316 5.316 10 C 0.019 3.981 11 H 0.115 0.885 12 C -0.170 4.170 13 C -0.093 4.093 14 H 0.120 0.880 15 C -0.074 4.074 16 C -0.081 4.081 17 C -0.176 4.176 18 C -0.137 4.137 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.131 4.131 22 C -0.187 4.187 23 S 0.350 5.650 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.110 0.890 27 H 0.137 0.863 28 H 0.226 0.774 29 H -0.188 1.188 30 H -0.177 1.177 31 H 0.251 0.749 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.608 -3.328 -1.706 4.071 hybrid contribution 0.082 0.513 0.702 0.873 sum 1.690 -2.815 -1.004 3.433 Atomic orbital electron populations 1.20215 0.86390 1.03153 1.02738 1.25161 1.01343 0.92753 1.16819 1.20123 0.86725 0.97150 1.02416 1.24509 0.92435 0.95554 1.02178 1.86502 1.28815 1.89649 1.29079 0.94083 0.77608 0.76443 0.90201 1.65965 1.17301 1.16641 1.27194 1.23246 0.91661 0.91509 0.98567 1.43580 1.01851 1.06163 1.80036 1.21980 0.98516 0.79823 0.97787 0.88467 1.23417 0.93672 1.03466 0.96426 1.21622 0.92927 0.98440 0.96329 0.87996 1.19483 0.93720 0.93917 1.00241 1.19798 0.93254 0.95989 0.99084 1.20867 1.02140 0.92095 1.02493 1.21070 0.99299 0.92880 1.00442 1.21179 0.96649 0.96078 0.99798 1.21145 0.93545 0.99504 0.99930 1.20975 0.99488 0.92318 1.00360 1.23676 0.94887 1.02503 0.97622 1.83976 0.96484 1.10536 1.74032 0.91032 0.92286 0.89025 0.86295 0.77353 1.18790 1.17667 0.74907 0.87941 0.90105 0.91078 0.91396 0.91274 0.86057 0.86040 0.86015 0.85982 0.90391 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.00 8.95 36.01 0.32 0.33 16 2 C -0.24 -0.37 6.50 -36.02 -0.23 -0.61 16 3 C 0.07 0.16 5.92 -84.18 -0.50 -0.34 16 4 C -0.03 -0.04 2.83 36.01 0.10 0.06 16 5 O -0.54 -0.07 9.89 -35.23 -0.35 -0.42 16 6 Si 0.72 0.82 32.08 -169.99 -5.45 -4.63 16 7 N -0.54 -1.76 8.94 -11.36 -0.10 -1.86 16 8 C 0.32 0.55 8.24 -87.68 -0.72 -0.17 16 9 N -0.68 0.33 5.42 -54.99 -0.30 0.03 16 10 C 0.13 -0.26 4.31 -67.11 -0.29 -0.55 16 11 H 0.10 -0.22 7.06 -51.93 -0.37 -0.59 16 12 C -0.13 0.34 7.29 -25.92 -0.19 0.16 16 13 C -0.08 0.13 3.41 -90.96 -0.31 -0.18 16 14 H 0.10 -0.19 6.07 -51.93 -0.32 -0.50 16 15 C -0.07 0.00 5.29 -104.62 -0.55 -0.55 16 16 C -0.08 -0.04 5.88 -104.62 -0.62 -0.66 16 17 C -0.12 0.12 9.33 36.01 0.34 0.46 16 18 C -0.12 -0.08 9.70 -39.58 -0.38 -0.47 16 19 C -0.12 -0.06 10.05 -39.59 -0.40 -0.46 16 20 C -0.12 -0.02 10.05 -39.59 -0.40 -0.42 16 21 C -0.11 0.02 8.63 -39.58 -0.34 -0.32 16 22 C -0.15 0.28 7.26 -25.92 -0.19 0.09 16 23 S 0.10 0.08 21.69 -107.50 -2.33 -2.25 16 24 H 0.07 -0.09 8.14 -51.93 -0.42 -0.52 16 25 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 26 H 0.09 0.06 6.61 -51.93 -0.34 -0.29 16 27 H 0.12 0.20 7.96 -51.93 -0.41 -0.21 16 28 H 0.38 -1.23 8.68 45.56 0.40 -0.84 16 29 H -0.26 -0.93 7.11 56.52 0.40 -0.53 16 30 H -0.25 -1.16 7.11 56.52 0.40 -0.76 16 31 H 0.41 -0.41 8.82 -40.82 -0.36 -0.77 16 32 H 0.10 -0.30 7.73 -51.93 -0.40 -0.70 16 33 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 34 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 35 H 0.07 -0.10 8.09 -51.93 -0.42 -0.52 16 36 H 0.07 -0.12 6.34 -51.93 -0.33 -0.45 16 37 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 38 H 0.12 -0.13 8.06 -52.48 -0.42 -0.55 16 39 H 0.12 -0.17 8.06 -52.49 -0.42 -0.60 16 40 H 0.12 -0.24 6.65 -52.49 -0.35 -0.59 16 41 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 42 H 0.10 -0.25 6.31 -51.93 -0.33 -0.58 16 LS Contribution 351.06 15.07 5.29 5.29 Total: 0.00 -5.61 351.06 -13.41 -19.03 By element: Atomic # 1 Polarization: -5.75 SS G_CDS: -5.81 Total: -11.56 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -4.36 Total: -3.63 kcal Atomic # 7 Polarization: -1.43 SS G_CDS: -0.40 Total: -1.83 kcal Atomic # 8 Polarization: -0.07 SS G_CDS: -0.35 Total: -0.42 kcal Atomic # 14 Polarization: 0.82 SS G_CDS: -5.45 Total: -4.63 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.33 Total: -2.25 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -5.61 -13.41 -19.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9744654_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.422 kcal (2) G-P(sol) polarization free energy of solvation -5.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds