Wall clock time and date at job start Mon Mar 8 2021 07:57:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 O
2 2 C 1.42899 * 1
3 3 Si 1.86298 * 109.47384 * 2 1
4 4 C 1.50700 * 109.47252 * 240.00128 * 2 1 3
5 5 C 1.33330 * 125.94911 * 300.00358 * 4 2 1
6 6 N 1.32124 * 114.58023 * 179.69557 * 5 4 2
7 7 C 1.29687 * 116.86524 * 0.26640 * 6 5 4
8 8 N 1.38608 * 124.95273 * 180.02562 * 7 6 5
9 9 C 1.46502 * 119.99645 * 0.02562 * 8 7 6
10 10 H 1.09003 * 112.85081 * 336.19657 * 9 8 7
11 11 C 1.53779 * 113.61211 * 107.50566 * 9 8 7
12 12 C 1.53786 * 87.08267 * 89.11630 * 11 9 8
13 13 H 1.09004 * 113.68964 * 270.87715 * 12 11 9
14 14 C 1.50697 * 113.61642 * 139.97953 * 12 11 9
15 15 C 1.38224 * 119.98049 * 142.50160 * 14 12 11
16 16 C 1.38244 * 120.03869 * 179.97438 * 15 14 12
17 17 C 1.38309 * 119.99848 * 0.02562 * 16 15 14
18 18 Cl 1.73601 * 120.01903 * 179.97438 * 17 16 15
19 19 C 1.38488 * 119.96093 * 0.02562 * 17 16 15
20 20 Cl 1.73596 * 120.01653 * 179.97438 * 19 17 16
21 21 C 1.38248 * 119.98110 * 322.22639 * 14 12 11
22 22 C 1.53779 * 113.61196 * 205.00536 * 9 8 7
23 23 S 1.70969 * 110.10172 * 0.02562 * 7 6 5
24 24 H 0.96705 * 113.99847 * 59.99949 * 1 2 3
25 25 H 1.08999 * 109.46926 * 120.00536 * 2 1 3
26 26 H 1.48497 * 110.00285 * 298.68263 * 3 2 1
27 27 H 1.48507 * 109.99803 * 60.00020 * 3 2 1
28 28 H 1.08002 * 122.71398 * 359.96801 * 5 4 2
29 29 H 0.97005 * 119.99929 * 180.02562 * 8 7 6
30 30 H 1.08997 * 113.61080 * 203.65915 * 11 9 8
31 31 H 1.08999 * 113.61522 * 334.56720 * 11 9 8
32 32 H 1.07997 * 119.97841 * 0.02562 * 15 14 12
33 33 H 1.07999 * 119.99953 * 179.97438 * 16 15 14
34 34 H 1.08003 * 119.99733 * 0.02562 * 21 14 12
35 35 H 1.08997 * 113.61935 * 25.42766 * 22 9 8
36 36 H 1.09002 * 113.61821 * 156.33874 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 8 0.0000 0.0000 0.0000
2 6 1.4290 0.0000 0.0000
3 14 2.0501 1.7564 0.0000
4 6 1.9314 -0.7104 -1.2305
5 6 1.6834 -1.9788 -1.5580
6 7 2.2328 -2.3705 -2.6940
7 6 2.9375 -1.4924 -3.3376
8 7 3.5854 -1.7218 -4.5413
9 6 3.5006 -3.0378 -5.1795
10 1 3.2809 -3.8378 -4.4725
11 6 2.6094 -3.0584 -6.4326
12 6 3.8672 -2.6901 -7.2372
13 1 4.0316 -1.6162 -7.3257
14 6 3.9712 -3.4089 -8.5576
15 6 4.4727 -2.7507 -9.6647
16 6 4.5691 -3.4091 -10.8765
17 6 4.1632 -4.7271 -10.9816
18 17 4.2834 -5.5542 -12.5031
19 6 3.6597 -5.3862 -9.8725
20 17 3.1491 -7.0402 -10.0030
21 6 3.5703 -4.7281 -8.6595
22 6 4.6837 -3.3475 -6.1118
23 16 2.9509 -0.0105 -2.4851
24 1 -0.3933 0.4417 -0.7651
25 1 1.7923 -0.5139 0.8899
26 1 1.5880 2.4586 -1.2242
27 1 1.5615 2.4678 1.2086
28 1 1.0786 -2.6320 -0.9466
29 1 4.0948 -1.0110 -4.9611
30 1 2.2129 -4.0455 -6.6700
31 1 1.8450 -2.2815 -6.4375
32 1 4.7902 -1.7217 -9.5828
33 1 4.9607 -2.8940 -11.7412
34 1 3.1823 -5.2430 -7.7930
35 1 5.5937 -2.8040 -5.8579
36 1 4.8542 -4.4136 -6.2617
There are 55 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 55
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
s_27_9750036_15704118.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 07:57:39
Heat of formation + Delta-G solvation = 60.985535 kcal
Electronic energy + Delta-G solvation = -23103.890750 eV
Core-core repulsion = 19348.010991 eV
Total energy + Delta-G solvation = -3755.879759 eV
No. of doubly occupied orbitals = 55
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 357.010 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.66850 -40.64974 -39.60317 -38.00040 -37.54575 -37.48863 -35.32015 -32.10548
-32.00870 -31.02552 -27.04872 -26.88950 -26.23391 -24.66223 -24.07542 -22.98074
-21.39890 -20.22908 -19.61648 -18.66198 -18.14061 -17.30224 -17.13743 -16.71781
-16.53585 -16.41106 -15.93646 -15.81336 -15.45380 -15.21525 -15.13249 -14.95449
-14.71182 -13.97751 -13.89174 -13.75556 -13.62120 -13.02448 -12.92326 -12.89532
-12.62378 -12.38945 -12.36465 -12.08943 -12.01941 -11.83964 -11.83354 -11.46154
-11.17949 -10.90804 -10.28539 -10.21017 -10.08055 -9.67923 -8.79334 -5.08242
-0.20718 -0.06579 -0.05850 -0.00669 0.66183 0.80430 1.17118 1.22514
1.53352 1.88685 1.99909 2.02535 2.23737 3.20333 3.31686 3.36098
3.46533 3.49342 3.62181 3.70329 3.86760 3.90004 3.92179 4.08743
4.16385 4.41115 4.50800 4.52075 4.58062 4.60739 4.71595 4.73234
4.78564 4.84267 4.85749 4.94649 5.16267 5.27858 5.43192 5.79950
5.98342 6.33652 6.97346
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 O -0.526 6.526
2 C -0.017 4.017
3 Si 0.654 3.346
4 C -0.304 4.304
5 C 0.119 3.881
6 N -0.548 5.548
7 C 0.327 3.673
8 N -0.676 5.676
9 C 0.137 3.863
10 H 0.110 0.890
11 C -0.146 4.146
12 C -0.075 4.075
13 H 0.103 0.897
14 C -0.054 4.054
15 C -0.100 4.100
16 C -0.095 4.095
17 C -0.036 4.036
18 Cl -0.047 7.047
19 C -0.028 4.028
20 Cl -0.046 7.046
21 C -0.097 4.097
22 C -0.137 4.137
23 S 0.090 5.910
24 H 0.377 0.623
25 H 0.126 0.874
26 H -0.244 1.244
27 H -0.237 1.237
28 H 0.176 0.824
29 H 0.414 0.586
30 H 0.097 0.903
31 H 0.077 0.923
32 H 0.138 0.862
33 H 0.144 0.856
34 H 0.144 0.856
35 H 0.080 0.920
36 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.568 3.558 0.215 5.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 O -0.332 6.332
2 C -0.130 4.130
3 Si 0.553 3.447
4 C -0.427 4.427
5 C -0.032 4.032
6 N -0.273 5.273
7 C -0.044 4.044
8 N -0.315 5.315
9 C 0.029 3.971
10 H 0.128 0.872
11 C -0.185 4.185
12 C -0.094 4.094
13 H 0.121 0.879
14 C -0.055 4.055
15 C -0.118 4.118
16 C -0.114 4.114
17 C -0.064 4.064
18 Cl -0.018 7.018
19 C -0.055 4.055
20 Cl -0.017 7.017
21 C -0.116 4.116
22 C -0.175 4.175
23 S 0.339 5.661
24 H 0.225 0.775
25 H 0.143 0.857
26 H -0.168 1.168
27 H -0.161 1.161
28 H 0.193 0.807
29 H 0.252 0.748
30 H 0.115 0.885
31 H 0.096 0.904
32 H 0.156 0.844
33 H 0.161 0.839
34 H 0.161 0.839
35 H 0.099 0.901
36 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges 3.791 4.147 0.168 5.621
hybrid contribution -1.348 -0.717 -0.570 1.630
sum 2.443 3.430 -0.402 4.230
Atomic orbital electron populations
1.86620 1.17478 1.79895 1.49224 1.24076 0.83473 1.09779 0.95713
0.95231 0.91636 0.75264 0.82573 1.25536 1.13132 0.99249 1.04739
1.21340 0.97150 0.93062 0.91676 1.66478 1.16992 1.33498 1.10304
1.23702 0.95113 0.93483 0.92080 1.43677 1.54618 1.14162 1.19017
1.21872 0.96227 0.85108 0.93871 0.87235 1.23637 0.96490 1.03320
0.95028 1.21668 0.98054 0.99586 0.90063 0.87897 1.19733 0.97227
0.93118 0.95394 1.21148 0.98682 1.00537 0.91427 1.21092 0.99224
0.91894 0.99180 1.20855 1.03915 0.94018 0.87615 1.98415 1.96526
1.78218 1.28651 1.20794 1.02618 0.87872 0.94237 1.98418 1.89042
1.15939 1.98255 1.20898 1.00364 0.94354 0.95988 1.23489 0.97468
1.02541 0.93992 1.84008 1.51243 1.13684 1.17155 0.77539 0.85689
1.16776 1.16080 0.80669 0.74812 0.88499 0.90429 0.84392 0.83862
0.83869 0.90103 0.88026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 O -0.53 -0.42 12.87 -35.23 -0.45 -0.87 16
2 C -0.02 0.01 2.99 36.01 0.11 0.12 16
3 Si 0.65 -0.65 31.05 -169.99 -5.28 -5.92 16
4 C -0.30 -0.05 5.74 -36.02 -0.21 -0.26 16
5 C 0.12 0.16 11.22 -19.14 -0.21 -0.06 16
6 N -0.55 -1.17 9.83 -15.21 -0.15 -1.32 16
7 C 0.33 0.09 8.09 -87.68 -0.71 -0.61 16
8 N -0.68 1.43 5.42 -54.99 -0.30 1.13 16
9 C 0.14 -0.32 4.44 -67.12 -0.30 -0.62 16
10 H 0.11 -0.07 7.66 -51.93 -0.40 -0.47 16
11 C -0.15 0.38 7.25 -25.92 -0.19 0.19 16
12 C -0.08 0.27 3.86 -90.95 -0.35 -0.08 16
13 H 0.10 -0.48 8.09 -51.93 -0.42 -0.90 16
14 C -0.05 0.11 5.29 -104.62 -0.55 -0.44 16
15 C -0.10 0.21 9.71 -39.58 -0.38 -0.18 16
16 C -0.10 0.09 9.83 -39.55 -0.39 -0.30 16
17 C -0.04 -0.03 6.32 -39.46 -0.25 -0.28 16
18 Cl -0.05 -0.08 27.96 -51.86 -1.45 -1.53 16
19 C -0.03 -0.02 6.32 -39.47 -0.25 -0.27 16
20 Cl -0.05 -0.07 27.96 -51.86 -1.45 -1.52 16
21 C -0.10 0.09 8.38 -39.56 -0.33 -0.24 16
22 C -0.14 0.51 7.29 -25.91 -0.19 0.32 16
23 S 0.09 -0.07 20.57 -107.50 -2.21 -2.28 16
24 H 0.38 -0.68 8.70 45.56 0.40 -0.28 16
25 H 0.13 -0.18 7.96 -51.93 -0.41 -0.59 16
26 H -0.24 -0.22 7.11 56.52 0.40 0.19 16
27 H -0.24 -0.42 7.11 56.52 0.40 -0.02 16
28 H 0.18 0.06 8.06 -52.49 -0.42 -0.37 16
29 H 0.41 -1.77 8.83 -40.82 -0.36 -2.13 16
30 H 0.10 -0.26 6.32 -51.93 -0.33 -0.58 16
31 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16
32 H 0.14 -0.59 8.05 -52.49 -0.42 -1.01 16
33 H 0.14 -0.35 8.06 -52.49 -0.42 -0.77 16
34 H 0.14 -0.32 6.67 -52.48 -0.35 -0.67 16
35 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16
36 H 0.10 -0.37 7.71 -51.93 -0.40 -0.77 16
LS Contribution 349.02 15.07 5.26 5.26
Total: 0.00 -5.62 349.02 -13.82 -19.44
By element:
Atomic # 1 Polarization: -6.08 SS G_CDS: -3.59 Total: -9.66 kcal
Atomic # 6 Polarization: 1.49 SS G_CDS: -4.21 Total: -2.72 kcal
Atomic # 7 Polarization: 0.26 SS G_CDS: -0.45 Total: -0.19 kcal
Atomic # 8 Polarization: -0.42 SS G_CDS: -0.45 Total: -0.87 kcal
Atomic # 14 Polarization: -0.65 SS G_CDS: -5.28 Total: -5.92 kcal
Atomic # 16 Polarization: -0.07 SS G_CDS: -2.21 Total: -2.28 kcal
Atomic # 17 Polarization: -0.15 SS G_CDS: -2.90 Total: -3.05 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -5.62 -13.82 -19.44 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_27_9750036_15704118.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.424 kcal
(2) G-P(sol) polarization free energy of solvation -5.616 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.809 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.823 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) 60.986 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds