Wall clock time and date at job start Mon Mar 8 2021 10:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42906 * 114.00514 * 2 1 4 4 H 1.09002 * 112.84486 * 18.80138 * 3 2 1 5 5 C 1.53778 * 113.61764 * 149.99519 * 3 2 1 6 6 C 1.53773 * 87.08111 * 139.98301 * 5 3 2 7 7 H 1.09002 * 113.61444 * 89.20067 * 6 5 3 8 8 N 1.46506 * 113.61686 * 220.02018 * 6 5 3 9 9 C 1.39141 * 120.00029 * 203.47192 * 8 6 5 10 10 N 1.32333 * 119.72021 * 359.97438 * 9 8 6 11 11 C 1.32006 * 121.64762 * 179.97438 * 10 9 8 12 12 C 1.37983 * 120.90192 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.32919 * 180.02562 * 12 11 10 14 14 O 1.42899 * 109.47154 * 245.00179 * 13 12 11 15 15 Si 1.86302 * 109.47012 * 4.99968 * 13 12 11 16 16 C 1.38906 * 119.34530 * 359.97438 * 12 11 10 17 17 C 1.38446 * 118.48724 * 359.74264 * 16 12 11 18 18 F 1.35091 * 120.47397 * 180.26869 * 17 16 12 19 19 C 1.53781 * 87.17302 * 334.61035 * 6 5 3 20 20 H 1.09005 * 109.46886 * 60.00092 * 1 2 3 21 21 H 1.08992 * 109.47389 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47336 * 300.00285 * 1 2 3 23 23 H 1.09000 * 113.61172 * 25.43452 * 5 3 2 24 24 H 1.09003 * 113.61642 * 254.53708 * 5 3 2 25 25 H 0.97005 * 119.99527 * 23.46811 * 8 6 5 26 26 H 1.07997 * 119.54974 * 179.97438 * 11 10 9 27 27 H 1.08997 * 109.47520 * 124.99778 * 13 12 11 28 28 H 0.96698 * 114.00105 * 59.99986 * 14 13 12 29 29 H 1.48500 * 109.99914 * 58.68055 * 15 13 12 30 30 H 1.48508 * 110.00121 * 180.02562 * 15 13 12 31 31 H 1.08004 * 120.75730 * 180.02562 * 16 12 11 32 32 H 1.09005 * 113.61233 * 139.93740 * 19 6 5 33 33 H 1.08999 * 113.61553 * 270.83930 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 0.3237 5 6 3.3755 1.3719 0.7046 6 6 3.8228 2.3180 -0.4221 7 1 3.6236 3.3693 -0.2142 8 7 5.1936 2.0785 -0.8802 9 6 5.9067 3.0974 -1.5040 10 7 5.3412 4.2807 -1.6811 11 6 5.9828 5.2741 -2.2676 12 6 7.2760 5.1130 -2.7210 13 6 7.9964 6.2560 -3.3882 14 8 8.2573 5.9229 -4.7531 15 14 6.9361 7.7861 -3.3143 16 6 7.9076 3.8869 -2.5554 17 6 7.2125 2.8650 -1.9315 18 9 7.7900 1.6581 -1.7447 19 6 2.7534 1.6510 -1.3032 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 3.9087 0.4212 0.7139 24 1 3.3383 1.8470 1.6849 25 1 5.6040 1.2094 -0.7485 26 1 5.4884 6.2258 -2.3950 27 1 8.9388 6.4419 -2.8731 28 1 7.4620 5.7443 -5.2734 29 1 6.6312 8.1249 -1.9010 30 1 7.6352 8.9207 -3.9696 31 1 8.9195 3.7357 -2.9013 32 1 2.2147 2.3513 -1.9416 33 1 3.1162 0.7769 -1.8439 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_9984032_17656566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:39:21 Heat of formation + Delta-G solvation = -43.303896 kcal Electronic energy + Delta-G solvation = -18656.953014 eV Core-core repulsion = 15407.304277 eV Total energy + Delta-G solvation = -3249.648737 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.106 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.98099 -41.50987 -40.44976 -38.13975 -37.37732 -35.06380 -33.21436 -31.21150 -27.83257 -26.86230 -26.54370 -25.52964 -23.88507 -22.85229 -21.02783 -19.25263 -18.79923 -18.34588 -17.73405 -17.40253 -17.03905 -16.72351 -16.13924 -16.05635 -15.93334 -15.54027 -15.38330 -14.90101 -14.75389 -14.32639 -14.03364 -13.55957 -13.51261 -13.48174 -12.76385 -12.54371 -12.32661 -12.13778 -12.02088 -11.84019 -11.21196 -10.72436 -10.69534 -10.46674 -10.40939 -8.78450 -4.96452 -0.09955 0.08107 1.32571 1.67925 1.92579 2.01427 2.51502 2.88812 3.02784 3.30023 3.47254 3.49809 3.56385 3.67388 3.83933 3.84952 3.89914 3.99706 4.33599 4.42246 4.47023 4.52320 4.55405 4.69733 4.72358 4.74504 4.85797 4.94953 4.96902 5.00494 5.06231 5.41956 5.95696 6.15118 6.28177 6.79734 6.92029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.063 3.937 4 H 0.109 0.891 5 C -0.143 4.143 6 C 0.142 3.858 7 H 0.122 0.878 8 N -0.703 5.703 9 C 0.382 3.618 10 N -0.524 5.524 11 C 0.150 3.850 12 C -0.207 4.207 13 C -0.060 4.060 14 O -0.556 6.556 15 Si 0.776 3.224 16 C -0.041 4.041 17 C -0.040 4.040 18 F -0.142 7.142 19 C -0.166 4.166 20 H 0.049 0.951 21 H 0.090 0.910 22 H 0.053 0.947 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.415 0.585 26 H 0.188 0.812 27 H 0.110 0.890 28 H 0.396 0.604 29 H -0.280 1.280 30 H -0.297 1.297 31 H 0.153 0.847 32 H 0.079 0.921 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 1.779 -0.281 4.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.004 3.996 4 H 0.127 0.873 5 C -0.181 4.181 6 C 0.036 3.964 7 H 0.140 0.860 8 N -0.335 5.335 9 C 0.144 3.856 10 N -0.241 5.241 11 C -0.007 4.007 12 C -0.212 4.212 13 C -0.170 4.170 14 O -0.364 6.364 15 Si 0.681 3.319 16 C -0.067 4.067 17 C -0.066 4.066 18 F -0.121 7.121 19 C -0.206 4.206 20 H 0.068 0.932 21 H 0.108 0.892 22 H 0.072 0.928 23 H 0.108 0.892 24 H 0.109 0.891 25 H 0.253 0.747 26 H 0.204 0.796 27 H 0.128 0.872 28 H 0.246 0.754 29 H -0.206 1.206 30 H -0.225 1.225 31 H 0.171 0.829 32 H 0.098 0.902 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.819 2.601 0.565 5.506 hybrid contribution 1.605 -1.089 0.037 1.940 sum -3.215 1.512 0.602 3.603 Atomic orbital electron populations 1.22953 0.79754 1.03619 1.00915 1.87908 1.21294 1.28108 1.94690 1.23607 0.94026 0.85544 0.96393 0.87331 1.23619 0.95476 1.00188 0.98847 1.22191 0.79286 1.00429 0.94459 0.85985 1.44612 1.14636 1.12167 1.62115 1.18590 0.86920 0.89086 0.90991 1.67322 1.37196 0.99061 1.20545 1.22723 0.90551 0.96870 0.90531 1.21003 0.96641 0.96730 1.06835 1.25019 1.05237 1.02791 0.83987 1.86481 1.37988 1.92253 1.19716 0.93832 0.84412 0.73190 0.80461 1.21446 1.00840 0.91046 0.93360 1.18165 0.93188 0.83790 1.11480 1.91462 1.84325 1.42187 1.94130 1.24018 0.97718 1.00957 0.97867 0.93224 0.89162 0.92814 0.89203 0.89062 0.74693 0.79617 0.87223 0.75403 1.20619 1.22517 0.82928 0.90204 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 2 O -0.40 -1.31 10.72 -148.98 -1.60 -2.90 16 3 C 0.06 -0.07 4.31 31.18 0.13 0.07 16 4 H 0.11 -0.50 7.87 -2.39 -0.02 -0.52 16 5 C -0.14 0.26 7.66 31.12 0.24 0.50 16 6 C 0.14 -0.13 4.24 45.51 0.19 0.07 16 7 H 0.12 -0.09 7.45 -2.39 -0.02 -0.11 16 8 N -0.70 -0.95 5.51 -321.79 -1.77 -2.72 16 9 C 0.38 1.45 7.49 133.09 1.00 2.45 16 10 N -0.52 -1.39 9.15 -193.04 -1.77 -3.16 16 11 C 0.15 -0.19 9.83 84.61 0.83 0.64 16 12 C -0.21 0.19 5.36 -19.77 -0.11 0.08 16 13 C -0.06 0.16 2.82 71.23 0.20 0.36 16 14 O -0.56 0.86 12.84 -148.98 -1.91 -1.06 16 15 Si 0.78 -3.66 29.83 68.60 2.05 -1.62 16 16 C -0.04 -0.08 9.82 22.48 0.22 0.14 16 17 C -0.04 -0.18 7.35 22.59 0.17 -0.01 16 18 F -0.14 -0.89 16.65 44.97 0.75 -0.14 16 19 C -0.17 0.07 7.73 31.18 0.24 0.32 16 20 H 0.05 -0.17 8.14 -2.38 -0.02 -0.19 16 21 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 22 H 0.05 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.09 -0.05 8.11 -2.39 -0.02 -0.07 16 24 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H 0.42 0.08 8.18 -92.70 -0.76 -0.68 16 26 H 0.19 -1.34 4.91 -2.91 -0.01 -1.35 16 27 H 0.11 -0.18 7.96 -2.39 -0.02 -0.20 16 28 H 0.40 -3.77 8.70 -74.06 -0.64 -4.42 16 29 H -0.28 0.08 7.11 99.48 0.71 0.79 16 30 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 31 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 32 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 33 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 Total: 0.00 -13.43 286.46 -0.13 -13.56 By element: Atomic # 1 Polarization: -7.55 SS G_CDS: -0.22 Total: -7.77 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 4.35 Total: 5.80 kcal Atomic # 7 Polarization: -2.34 SS G_CDS: -3.54 Total: -5.88 kcal Atomic # 8 Polarization: -0.45 SS G_CDS: -3.51 Total: -3.96 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.75 Total: -0.14 kcal Atomic # 14 Polarization: -3.66 SS G_CDS: 2.05 Total: -1.62 kcal Total: -13.43 -0.13 -13.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_9984032_17656566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.743 kcal (2) G-P(sol) polarization free energy of solvation -13.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds