Wall clock time and date at job start Mon Mar 8 2021 07:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86308 * 109.47044 * 2 1 4 4 C 1.50700 * 109.47596 * 120.00194 * 2 1 3 5 5 N 1.31817 * 119.66325 * 210.27425 * 4 2 1 6 6 C 1.31880 * 121.77993 * 180.26662 * 5 4 2 7 7 C 1.38209 * 120.88862 * 359.74190 * 6 5 4 8 8 C 1.38579 * 119.22250 * 359.97438 * 7 6 5 9 9 C 1.38747 * 119.65660 * 29.99528 * 4 2 1 10 10 O 1.35918 * 120.47553 * 0.02562 * 9 4 2 11 11 C 1.42899 * 117.00219 * 179.72187 * 10 9 4 12 12 C 1.52997 * 109.47052 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47280 * 305.00193 * 12 11 10 14 14 C 1.53002 * 109.46978 * 65.00120 * 12 11 10 15 15 C 1.52997 * 109.46978 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47164 * 299.99874 * 15 14 12 17 17 H 1.08998 * 109.46505 * 299.99708 * 16 15 14 18 18 O 1.42895 * 109.47000 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47127 * 59.99836 * 16 15 14 20 20 C 1.52996 * 109.46975 * 184.99658 * 12 11 10 21 21 H 0.96706 * 113.99837 * 299.99477 * 1 2 3 22 22 H 1.08997 * 109.47532 * 240.00427 * 2 1 3 23 23 H 1.48487 * 110.00080 * 300.00182 * 3 2 1 24 24 H 1.48500 * 109.99911 * 61.32315 * 3 2 1 25 25 H 1.07996 * 119.55337 * 179.71892 * 6 5 4 26 26 H 1.07990 * 120.38642 * 179.97438 * 7 6 5 27 27 H 1.08004 * 120.81059 * 179.97438 * 8 7 6 28 28 H 1.08994 * 109.47071 * 59.99324 * 11 10 9 29 29 H 1.09000 * 109.46662 * 299.99734 * 11 10 9 30 30 H 1.09002 * 109.47097 * 299.99801 * 14 12 11 31 31 H 1.09001 * 109.47142 * 59.99766 * 14 12 11 32 32 H 1.09001 * 109.47375 * 59.99908 * 15 14 12 33 33 H 1.09000 * 109.47140 * 179.97438 * 15 14 12 34 34 H 0.96698 * 114.00355 * 60.00121 * 18 16 15 35 35 H 1.09002 * 109.47153 * 180.02562 * 19 16 15 36 36 H 1.09001 * 109.46832 * 60.00321 * 19 16 15 37 37 H 1.09004 * 109.47368 * 60.00217 * 20 12 11 38 38 H 1.09001 * 109.47372 * 300.00372 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 7 3.0815 -0.3530 1.7661 6 6 3.5630 -0.9494 2.8393 7 6 2.8705 -1.9775 3.4506 8 6 1.6542 -2.3811 2.9234 9 6 1.1758 -1.7302 1.7910 10 8 -0.0120 -2.0919 1.2382 11 6 -0.7258 -3.1550 1.8724 12 6 -2.0285 -3.4180 1.1144 13 1 -2.6002 -2.4929 1.0425 14 6 -1.7064 -3.9289 -0.2914 15 6 -3.0091 -4.1912 -1.0496 16 6 -3.8320 -5.2419 -0.3014 17 1 -3.2606 -6.1674 -0.2297 18 8 -5.0484 -5.4874 -1.0099 19 6 -4.1541 -4.7311 1.1044 20 6 -2.8508 -4.4690 1.8628 21 1 -0.3933 0.4417 0.7651 22 1 1.7923 -0.5137 -0.8900 23 1 1.5614 2.4679 -1.2084 24 1 1.5879 2.4586 1.2243 25 1 4.5115 -0.6305 3.2456 26 1 3.2726 -2.4605 4.3287 27 1 1.0917 -3.1820 3.3802 28 1 -0.9543 -2.8764 2.9010 29 1 -0.1138 -4.0570 1.8677 30 1 -1.1205 -3.1802 -0.8247 31 1 -1.1346 -4.8541 -0.2196 32 1 -3.5804 -3.2658 -1.1215 33 1 -2.7796 -4.5548 -2.0513 34 1 -4.9198 -5.8143 -1.9108 35 1 -4.7400 -5.4798 1.6377 36 1 -4.7255 -3.8057 1.0326 37 1 -3.0804 -4.1051 2.8644 38 1 -2.2790 -5.3942 1.9346 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_10177736_16737256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:24:43 Heat of formation + Delta-G solvation = -96.123075 kcal Electronic energy + Delta-G solvation = -20818.999610 eV Core-core repulsion = 17627.720537 eV Total energy + Delta-G solvation = -3191.279073 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.88636 -40.34373 -39.02699 -37.73741 -36.71769 -33.48042 -32.44832 -31.89076 -31.12052 -27.29118 -26.96029 -24.11712 -23.81004 -23.28126 -22.09003 -20.95011 -19.28695 -18.42265 -18.20108 -17.89576 -17.21659 -16.84524 -16.51442 -16.04071 -15.57267 -15.49933 -15.31621 -15.00437 -14.72972 -14.35001 -14.12571 -13.86093 -13.69728 -13.38845 -13.27275 -13.02144 -12.76929 -12.39722 -12.22817 -12.10999 -11.81119 -11.67837 -11.65346 -11.17697 -11.02481 -10.77233 -10.70416 -10.37615 -9.31167 -4.62681 -0.01182 0.19542 1.47768 1.84594 2.01722 2.09764 2.69620 3.11812 3.14823 3.32688 3.53109 3.59821 3.64161 3.74634 3.79485 3.95927 4.00688 4.04887 4.11843 4.23181 4.26497 4.28670 4.37169 4.40649 4.43298 4.50962 4.69793 4.71537 4.87596 4.95111 4.97904 5.00697 5.03183 5.08840 5.11076 5.27120 5.35532 5.40795 6.20365 6.47891 6.68323 6.89606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.513 6.513 2 C -0.061 4.061 3 Si 0.720 3.280 4 C 0.065 3.935 5 N -0.436 5.436 6 C 0.065 3.935 7 C -0.129 4.129 8 C -0.169 4.169 9 C 0.099 3.901 10 O -0.280 6.280 11 C 0.057 3.943 12 C -0.084 4.084 13 H 0.086 0.914 14 C -0.110 4.110 15 C -0.152 4.152 16 C 0.103 3.897 17 H 0.054 0.946 18 O -0.569 6.569 19 C -0.111 4.111 20 C -0.110 4.110 21 H 0.371 0.629 22 H 0.123 0.877 23 H -0.261 1.261 24 H -0.268 1.268 25 H 0.164 0.836 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.379 0.621 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.412 -2.572 2.258 4.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.317 6.317 2 C -0.171 4.171 3 Si 0.620 3.380 4 C -0.075 4.075 5 N -0.147 5.147 6 C -0.092 4.092 7 C -0.149 4.149 8 C -0.195 4.195 9 C 0.050 3.950 10 O -0.191 6.191 11 C -0.019 4.019 12 C -0.103 4.103 13 H 0.104 0.896 14 C -0.148 4.148 15 C -0.189 4.189 16 C 0.044 3.956 17 H 0.072 0.928 18 O -0.375 6.375 19 C -0.149 4.149 20 C -0.148 4.148 21 H 0.218 0.782 22 H 0.141 0.859 23 H -0.187 1.187 24 H -0.193 1.193 25 H 0.182 0.818 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.226 0.774 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.359 -1.109 1.712 3.119 hybrid contribution -1.087 -1.459 0.835 2.002 sum 1.272 -2.567 2.546 3.833 Atomic orbital electron populations 1.86646 1.16585 1.80066 1.48436 1.24858 0.84367 1.11549 0.96307 0.93788 0.92047 0.72740 0.79378 1.21326 0.91748 0.95431 0.98990 1.66957 1.10638 1.26833 1.10314 1.22651 1.00434 0.94006 0.92080 1.22052 0.94549 0.97504 1.00753 1.21797 0.98455 1.02237 0.97046 1.19826 0.87479 0.94700 0.92955 1.86337 1.29216 1.51319 1.52213 1.22980 0.93191 0.89120 0.96582 1.21182 0.93805 0.99927 0.95340 0.89563 1.21499 0.96994 1.01496 0.94781 1.22271 0.96917 1.00519 0.99230 1.21845 0.85064 0.96528 0.92151 0.92806 1.86512 1.31382 1.88735 1.30892 1.21442 0.97285 1.02324 0.93800 1.21494 0.95682 0.98707 0.98894 0.78179 0.85939 1.18664 1.19309 0.81845 0.84202 0.84230 0.91948 0.91969 0.90324 0.92028 0.90902 0.91553 0.77363 0.90858 0.90918 0.90868 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.13 10.64 -58.08 -0.62 -1.75 16 2 C -0.06 -0.09 2.92 36.01 0.11 0.01 16 3 Si 0.72 0.92 31.88 -169.99 -5.42 -4.50 16 4 C 0.06 0.13 6.09 -82.41 -0.50 -0.38 16 5 N -0.44 -0.75 8.36 -9.35 -0.08 -0.83 16 6 C 0.06 -0.01 11.18 -17.54 -0.20 -0.21 16 7 C -0.13 0.13 10.11 -39.47 -0.40 -0.27 16 8 C -0.17 0.04 9.14 -39.14 -0.36 -0.32 16 9 C 0.10 0.14 6.56 -39.07 -0.26 -0.12 16 10 O -0.28 -0.31 7.41 -42.33 -0.31 -0.63 16 11 C 0.06 -0.07 4.14 37.16 0.15 0.08 16 12 C -0.08 0.10 2.43 -90.62 -0.22 -0.12 16 13 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 14 C -0.11 0.06 5.10 -26.73 -0.14 -0.08 16 15 C -0.15 0.06 5.54 -26.73 -0.15 -0.09 16 16 C 0.10 0.00 3.47 -26.73 -0.09 -0.10 16 17 H 0.05 -0.03 8.14 -51.93 -0.42 -0.46 16 18 O -0.57 -0.73 13.32 -35.23 -0.47 -1.20 16 19 C -0.11 0.03 5.58 -26.71 -0.15 -0.11 16 20 C -0.11 0.21 5.21 -26.71 -0.14 0.07 16 21 H 0.37 0.03 8.70 45.56 0.40 0.43 16 22 H 0.12 0.11 7.96 -51.93 -0.41 -0.31 16 23 H -0.26 -0.96 7.11 56.52 0.40 -0.56 16 24 H -0.27 -1.04 7.11 56.52 0.40 -0.64 16 25 H 0.16 -0.46 8.06 -52.49 -0.42 -0.88 16 26 H 0.14 -0.49 8.06 -52.49 -0.42 -0.91 16 27 H 0.14 -0.31 6.45 -52.48 -0.34 -0.65 16 28 H 0.06 -0.13 7.70 -51.93 -0.40 -0.53 16 29 H 0.06 -0.12 7.70 -51.93 -0.40 -0.52 16 30 H 0.08 0.08 7.82 -51.93 -0.41 -0.33 16 31 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 32 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 34 H 0.38 -0.95 9.08 45.56 0.41 -0.53 16 35 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 36 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 37 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 38 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 LS Contribution 308.08 15.07 4.64 4.64 Total: 0.00 -5.96 308.08 -9.59 -15.55 By element: Atomic # 1 Polarization: -4.66 SS G_CDS: -5.00 Total: -9.66 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.34 Total: -1.62 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Atomic # 8 Polarization: -2.18 SS G_CDS: -1.40 Total: -3.58 kcal Atomic # 14 Polarization: 0.92 SS G_CDS: -5.42 Total: -4.50 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -5.96 -9.59 -15.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10177736_16737256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.573 kcal (2) G-P(sol) polarization free energy of solvation -5.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds