Wall clock time and date at job start Mon Mar 8 2021 07:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86308 * 109.47044 * 2 1 4 4 C 1.50700 * 109.47596 * 120.00194 * 2 1 3 5 5 N 1.31817 * 119.66325 * 210.27425 * 4 2 1 6 6 C 1.31880 * 121.77993 * 180.26662 * 5 4 2 7 7 C 1.38209 * 120.88862 * 359.74190 * 6 5 4 8 8 C 1.38579 * 119.22250 * 359.97438 * 7 6 5 9 9 C 1.38747 * 119.65660 * 29.99528 * 4 2 1 10 10 O 1.35918 * 120.47553 * 0.02562 * 9 4 2 11 11 C 1.42899 * 117.00219 * 179.72187 * 10 9 4 12 12 C 1.52997 * 109.47052 * 179.97438 * 11 10 9 13 13 H 1.08992 * 109.47280 * 305.00193 * 12 11 10 14 14 C 1.53002 * 109.46978 * 65.00120 * 12 11 10 15 15 C 1.52997 * 109.46978 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47164 * 299.99874 * 15 14 12 17 17 H 1.08998 * 109.46505 * 299.99708 * 16 15 14 18 18 O 1.42895 * 109.47000 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47127 * 59.99836 * 16 15 14 20 20 C 1.52996 * 109.46975 * 184.99658 * 12 11 10 21 21 H 0.96706 * 113.99837 * 299.99477 * 1 2 3 22 22 H 1.08997 * 109.47532 * 240.00427 * 2 1 3 23 23 H 1.48487 * 110.00080 * 300.00182 * 3 2 1 24 24 H 1.48500 * 109.99911 * 61.32315 * 3 2 1 25 25 H 1.07996 * 119.55337 * 179.71892 * 6 5 4 26 26 H 1.07990 * 120.38642 * 179.97438 * 7 6 5 27 27 H 1.08004 * 120.81059 * 179.97438 * 8 7 6 28 28 H 1.08994 * 109.47071 * 59.99324 * 11 10 9 29 29 H 1.09000 * 109.46662 * 299.99734 * 11 10 9 30 30 H 1.09002 * 109.47097 * 299.99801 * 14 12 11 31 31 H 1.09001 * 109.47142 * 59.99766 * 14 12 11 32 32 H 1.09001 * 109.47375 * 59.99908 * 15 14 12 33 33 H 1.09000 * 109.47140 * 179.97438 * 15 14 12 34 34 H 0.96698 * 114.00355 * 60.00121 * 18 16 15 35 35 H 1.09002 * 109.47153 * 180.02562 * 19 16 15 36 36 H 1.09001 * 109.46832 * 60.00321 * 19 16 15 37 37 H 1.09004 * 109.47368 * 60.00217 * 20 12 11 38 38 H 1.09001 * 109.47372 * 300.00372 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 7 3.0815 -0.3530 1.7661 6 6 3.5630 -0.9494 2.8393 7 6 2.8705 -1.9775 3.4506 8 6 1.6542 -2.3811 2.9234 9 6 1.1758 -1.7302 1.7910 10 8 -0.0120 -2.0919 1.2382 11 6 -0.7258 -3.1550 1.8724 12 6 -2.0285 -3.4180 1.1144 13 1 -2.6002 -2.4929 1.0425 14 6 -1.7064 -3.9289 -0.2914 15 6 -3.0091 -4.1912 -1.0496 16 6 -3.8320 -5.2419 -0.3014 17 1 -3.2606 -6.1674 -0.2297 18 8 -5.0484 -5.4874 -1.0099 19 6 -4.1541 -4.7311 1.1044 20 6 -2.8508 -4.4690 1.8628 21 1 -0.3933 0.4417 0.7651 22 1 1.7923 -0.5137 -0.8900 23 1 1.5614 2.4679 -1.2084 24 1 1.5879 2.4586 1.2243 25 1 4.5115 -0.6305 3.2456 26 1 3.2726 -2.4605 4.3287 27 1 1.0917 -3.1820 3.3802 28 1 -0.9543 -2.8764 2.9010 29 1 -0.1138 -4.0570 1.8677 30 1 -1.1205 -3.1802 -0.8247 31 1 -1.1346 -4.8541 -0.2196 32 1 -3.5804 -3.2658 -1.1215 33 1 -2.7796 -4.5548 -2.0513 34 1 -4.9198 -5.8143 -1.9108 35 1 -4.7400 -5.4798 1.6377 36 1 -4.7255 -3.8057 1.0326 37 1 -3.0804 -4.1051 2.8644 38 1 -2.2790 -5.3942 1.9346 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10177736_16737256.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:24:43 Heat of formation + Delta-G solvation = -93.221850 kcal Electronic energy + Delta-G solvation = -20818.873803 eV Core-core repulsion = 17627.720537 eV Total energy + Delta-G solvation = -3191.153266 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85371 -40.30140 -39.00538 -37.85009 -36.71765 -33.44336 -32.41775 -31.84141 -31.10181 -27.32541 -26.88875 -24.07721 -23.75582 -23.27391 -22.05169 -20.89275 -19.26606 -18.44932 -18.21465 -17.89323 -17.17643 -16.85464 -16.51504 -16.07135 -15.53893 -15.44609 -15.30913 -14.99120 -14.71225 -14.33672 -14.08097 -14.03001 -13.67425 -13.37885 -13.21950 -12.99375 -12.72418 -12.51691 -12.19425 -12.05017 -12.01668 -11.61515 -11.60898 -11.12522 -11.04184 -10.76461 -10.67980 -10.42647 -9.30078 -4.77544 0.02029 0.23602 1.35866 1.66211 1.90449 2.08281 2.72289 3.15919 3.20232 3.28715 3.61545 3.66828 3.70233 3.79707 3.90077 4.05547 4.09285 4.11958 4.22581 4.27962 4.33295 4.37726 4.45522 4.47706 4.49656 4.57583 4.66880 4.79408 4.94951 5.01443 5.03525 5.06904 5.09733 5.12341 5.16294 5.30982 5.40349 5.50402 6.26582 6.42759 6.82197 6.91317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.526 6.526 2 C -0.063 4.063 3 Si 0.786 3.214 4 C 0.042 3.958 5 N -0.454 5.454 6 C 0.055 3.945 7 C -0.124 4.124 8 C -0.172 4.172 9 C 0.085 3.915 10 O -0.295 6.295 11 C 0.055 3.945 12 C -0.080 4.080 13 H 0.072 0.928 14 C -0.106 4.106 15 C -0.147 4.147 16 C 0.102 3.898 17 H 0.064 0.936 18 O -0.591 6.591 19 C -0.114 4.114 20 C -0.102 4.102 21 H 0.378 0.622 22 H 0.125 0.875 23 H -0.296 1.296 24 H -0.303 1.303 25 H 0.188 0.812 26 H 0.169 0.831 27 H 0.160 0.840 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.393 0.607 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -3.808 3.443 6.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.331 6.331 2 C -0.173 4.173 3 Si 0.691 3.309 4 C -0.096 4.096 5 N -0.166 5.166 6 C -0.102 4.102 7 C -0.144 4.144 8 C -0.198 4.198 9 C 0.037 3.963 10 O -0.206 6.206 11 C -0.020 4.020 12 C -0.098 4.098 13 H 0.090 0.910 14 C -0.143 4.143 15 C -0.185 4.185 16 C 0.043 3.957 17 H 0.082 0.918 18 O -0.399 6.399 19 C -0.151 4.151 20 C -0.140 4.140 21 H 0.226 0.774 22 H 0.143 0.857 23 H -0.224 1.224 24 H -0.231 1.231 25 H 0.205 0.795 26 H 0.186 0.814 27 H 0.178 0.822 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.242 0.758 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.150 -2.361 2.883 4.880 hybrid contribution -1.356 -1.074 0.490 1.797 sum 1.795 -3.435 3.373 5.138 Atomic orbital electron populations 1.86616 1.17178 1.80282 1.49023 1.24904 0.83955 1.11586 0.96825 0.93052 0.91074 0.71318 0.75429 1.21308 0.92451 0.96396 0.99458 1.66911 1.10753 1.27621 1.11288 1.23168 1.01361 0.94085 0.91547 1.22408 0.93964 0.96830 1.01165 1.22102 0.98888 1.02408 0.96419 1.19943 0.87646 0.95028 0.93688 1.86316 1.29387 1.52075 1.52871 1.23083 0.92893 0.89079 0.96932 1.21121 0.93995 0.99550 0.95163 0.90977 1.21439 0.96614 1.01278 0.94996 1.22215 0.96785 0.99809 0.99667 1.21914 0.84769 0.96879 0.92116 0.91815 1.86475 1.32341 1.88944 1.32162 1.21477 0.98036 1.01585 0.94017 1.21445 0.94731 0.98911 0.98902 0.77431 0.85715 1.22433 1.23078 0.79524 0.81353 0.82243 0.90730 0.90874 0.92127 0.91181 0.92444 0.91006 0.75765 0.91040 0.92230 0.89831 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -3.15 10.64 -127.13 -1.35 -4.50 16 2 C -0.06 -0.27 2.92 71.24 0.21 -0.06 16 3 Si 0.79 3.20 31.88 68.60 2.19 5.39 16 4 C 0.04 0.19 6.09 42.68 0.26 0.45 16 5 N -0.45 -1.60 8.36 -183.50 -1.53 -3.13 16 6 C 0.06 -0.07 11.18 84.68 0.95 0.87 16 7 C -0.12 0.47 10.11 22.34 0.23 0.69 16 8 C -0.17 0.30 9.14 22.56 0.21 0.51 16 9 C 0.09 0.24 6.56 22.60 0.15 0.39 16 10 O -0.29 -0.77 7.41 -70.79 -0.52 -1.29 16 11 C 0.06 -0.17 4.14 71.98 0.30 0.13 16 12 C -0.08 0.18 2.43 -10.80 -0.03 0.15 16 13 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 14 C -0.11 0.07 5.10 30.59 0.16 0.22 16 15 C -0.15 0.01 5.54 30.60 0.17 0.18 16 16 C 0.10 0.01 3.47 30.60 0.11 0.11 16 17 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 18 O -0.59 -1.76 13.32 -148.98 -1.98 -3.74 16 19 C -0.11 0.05 5.58 30.61 0.17 0.22 16 20 C -0.10 0.46 5.21 30.61 0.16 0.62 16 21 H 0.38 0.74 8.70 -74.05 -0.64 0.10 16 22 H 0.13 0.38 7.96 -2.39 -0.02 0.36 16 23 H -0.30 -2.83 7.11 99.48 0.71 -2.12 16 24 H -0.30 -2.97 7.11 99.48 0.71 -2.26 16 25 H 0.19 -1.34 8.06 -2.91 -0.02 -1.37 16 26 H 0.17 -1.67 8.06 -2.92 -0.02 -1.69 16 27 H 0.16 -1.04 6.45 -2.91 -0.02 -1.06 16 28 H 0.07 -0.41 7.70 -2.39 -0.02 -0.43 16 29 H 0.07 -0.38 7.70 -2.39 -0.02 -0.40 16 30 H 0.06 0.20 7.82 -2.39 -0.02 0.18 16 31 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.39 -1.84 9.08 -74.06 -0.67 -2.51 16 35 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.06 0.12 8.14 -2.39 -0.02 0.11 16 37 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 38 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 Total: 0.00 -14.84 308.08 -0.40 -15.24 By element: Atomic # 1 Polarization: -12.22 SS G_CDS: -0.22 Total: -12.44 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 3.03 Total: 4.48 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -1.53 Total: -3.13 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -3.86 Total: -9.53 kcal Atomic # 14 Polarization: 3.20 SS G_CDS: 2.19 Total: 5.39 kcal Total: -14.84 -0.40 -15.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10177736_16737256.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.985 kcal (2) G-P(sol) polarization free energy of solvation -14.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds