Wall clock time and date at job start Mon Mar 8 2021 08:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46669 * 2 1 4 4 C 1.53002 * 109.46690 * 240.00165 * 2 1 3 5 5 Si 1.86299 * 109.47063 * 120.00082 * 2 1 3 6 6 C 1.86294 * 109.47161 * 300.00017 * 5 2 1 7 7 C 1.86297 * 109.46852 * 180.02562 * 5 2 1 8 8 O 1.63101 * 109.47102 * 60.00273 * 5 2 1 9 9 C 1.42897 * 113.99785 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.46990 * 179.97438 * 9 8 5 11 11 O 1.42903 * 109.47156 * 64.99945 * 10 9 8 12 12 C 1.35900 * 116.99987 * 179.97438 * 11 10 9 13 13 C 1.38712 * 120.05227 * 180.02562 * 12 11 10 14 14 C 1.38162 * 119.94343 * 180.02562 * 13 12 11 15 15 C 1.50701 * 119.97405 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.46937 * 120.00073 * 15 14 13 17 17 Si 1.86301 * 109.47149 * 0.02562 * 15 14 13 18 18 H 1.48492 * 109.47150 * 179.97438 * 17 15 14 19 19 H 1.48496 * 109.46781 * 299.99883 * 17 15 14 20 20 H 1.48503 * 109.46998 * 59.99699 * 17 15 14 21 21 C 1.38251 * 120.05560 * 0.24937 * 14 13 12 22 22 C 1.38288 * 120.10848 * 359.49525 * 21 14 13 23 23 C 1.50697 * 119.97243 * 180.28053 * 22 21 14 24 24 F 1.39900 * 109.47119 * 180.23241 * 23 22 21 25 25 F 1.39907 * 109.46949 * 300.22604 * 23 22 21 26 26 F 1.39899 * 109.47460 * 60.22338 * 23 22 21 27 27 C 1.38122 * 120.05740 * 0.50615 * 22 21 14 28 28 H 1.09004 * 109.47168 * 299.99688 * 1 2 3 29 29 H 1.08996 * 109.47366 * 60.00251 * 1 2 3 30 30 H 1.09004 * 109.46912 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47024 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47570 * 299.99431 * 3 2 1 33 33 H 1.09001 * 109.47694 * 60.00645 * 3 2 1 34 34 H 1.08997 * 109.47405 * 299.99403 * 4 2 1 35 35 H 1.09001 * 109.47037 * 60.00207 * 4 2 1 36 36 H 1.09008 * 109.46478 * 179.97438 * 4 2 1 37 37 H 1.09004 * 109.46976 * 180.02562 * 6 5 2 38 38 H 1.09004 * 109.47366 * 300.00127 * 6 5 2 39 39 H 1.09001 * 109.47329 * 60.00207 * 6 5 2 40 40 H 1.09004 * 109.47206 * 300.00125 * 7 5 2 41 41 H 1.09001 * 109.47766 * 59.99981 * 7 5 2 42 42 H 1.09001 * 109.47000 * 180.02562 * 7 5 2 43 43 H 1.09003 * 109.47343 * 59.99703 * 9 8 5 44 44 H 1.08999 * 109.47219 * 299.99863 * 9 8 5 45 45 H 1.08997 * 109.47582 * 304.99898 * 10 9 8 46 46 H 1.09003 * 109.46958 * 184.99463 * 10 9 8 47 47 H 1.08002 * 120.03097 * 0.04058 * 13 12 11 48 48 H 1.09001 * 109.46927 * 239.99818 * 15 14 13 49 49 H 0.96705 * 113.99788 * 300.00011 * 16 15 14 50 50 H 1.07996 * 119.94384 * 179.72436 * 21 14 13 51 51 H 1.08002 * 120.03165 * 179.77344 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 -0.0001 3.0422 7 6 4.0140 -0.8775 1.5214 8 8 1.6074 -2.4160 1.5210 9 6 2.0295 -3.1817 2.6513 10 6 1.4637 -4.5994 2.5470 11 8 2.0311 -5.2565 1.4119 12 6 1.6315 -6.5335 1.1746 13 6 2.1426 -7.2312 0.0902 14 6 1.7344 -8.5292 -0.1493 15 6 2.2888 -9.2877 -1.3276 16 8 2.9633 -10.4595 -0.8652 17 14 3.4896 -8.2053 -2.2535 18 1 4.0364 -8.9528 -3.4142 19 1 2.7891 -6.9873 -2.7340 20 1 4.6009 -7.8132 -1.3498 21 6 0.8134 -9.1310 0.6880 22 6 0.3064 -8.4394 1.7729 23 6 -0.6926 -9.1005 2.6871 24 9 -1.0597 -8.2080 3.7000 25 9 -1.8266 -9.4649 1.9532 26 9 -0.1191 -10.2423 3.2568 27 6 0.7113 -7.1415 2.0165 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 1.8938 -0.5137 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 -0.0001 3.0423 40 1 4.3777 -1.3911 0.6314 41 1 4.3771 0.1502 1.5217 42 1 4.3773 -1.3918 2.4112 43 1 1.6655 -2.7118 3.5650 44 1 3.1184 -3.2255 2.6743 45 1 0.3805 -4.5510 2.4349 46 1 1.7109 -5.1567 3.4506 47 1 2.8592 -6.7603 -0.5664 48 1 1.4730 -9.5758 -1.9906 49 1 3.7028 -10.2782 -0.2690 50 1 0.4922 -10.1442 0.4966 51 1 0.3122 -6.6005 2.8618 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10339940_10902662.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:39:42 Heat of formation + Delta-G solvation = -288.241274 kcal Electronic energy + Delta-G solvation = -33974.206312 eV Core-core repulsion = 28968.604534 eV Total energy + Delta-G solvation = -5005.601778 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 380.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.26168 -48.78507 -48.72309 -41.55426 -39.47782 -37.88264 -37.27400 -36.82818 -33.62183 -31.96666 -30.36570 -29.31334 -29.05686 -27.84106 -27.37992 -27.36547 -27.11486 -24.18605 -23.32622 -22.13988 -20.41876 -19.96369 -19.58156 -19.53446 -18.26332 -18.08751 -17.81940 -17.53603 -17.01031 -16.61179 -16.11980 -15.94626 -15.91297 -15.67878 -15.61915 -15.48827 -15.23712 -15.16111 -14.96790 -14.88152 -14.86104 -14.81653 -14.73042 -14.07708 -13.95227 -13.82328 -13.60087 -13.51885 -13.36904 -13.27136 -13.17050 -12.96066 -12.95235 -12.89301 -12.50090 -12.40918 -12.24094 -12.18437 -12.04816 -11.80219 -11.79008 -11.69470 -11.51120 -11.26999 -10.58978 -10.31561 -10.29015 -10.05462 -9.46307 -0.34246 0.07490 1.12310 1.45622 1.51676 1.52346 1.53283 1.78519 1.91247 2.03075 2.14257 2.21513 2.47683 2.57891 2.89981 3.30296 3.41015 3.59200 3.71098 3.85888 3.93626 4.02611 4.05809 4.11370 4.12280 4.15596 4.28562 4.34307 4.45482 4.47431 4.61804 4.65213 4.75366 4.78211 4.79177 4.80476 4.81940 4.82684 4.87681 4.95209 4.99506 5.08573 5.08615 5.08968 5.19519 5.32164 5.34874 5.40365 5.43121 5.49370 5.60402 5.65534 6.21956 6.67726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.385 4.385 3 C -0.140 4.140 4 C -0.136 4.136 5 Si 1.318 2.682 6 C -0.516 4.516 7 C -0.519 4.519 8 O -0.638 6.638 9 C 0.074 3.926 10 C 0.041 3.959 11 O -0.311 6.311 12 C 0.136 3.864 13 C -0.136 4.136 14 C -0.077 4.077 15 C -0.075 4.075 16 O -0.547 6.547 17 Si 0.973 3.027 18 H -0.269 1.269 19 H -0.257 1.257 20 H -0.249 1.249 21 C -0.085 4.085 22 C -0.148 4.148 23 C 0.510 3.490 24 F -0.177 7.177 25 F -0.179 7.179 26 F -0.178 7.178 27 C -0.164 4.164 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.144 0.856 48 H 0.136 0.864 49 H 0.391 0.609 50 H 0.146 0.854 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 2.818 1.960 4.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.427 4.427 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.448 2.552 6 C -0.618 4.618 7 C -0.620 4.620 8 O -0.597 6.597 9 C -0.001 4.001 10 C -0.033 4.033 11 O -0.224 6.224 12 C 0.090 3.910 13 C -0.155 4.155 14 C -0.078 4.078 15 C -0.186 4.186 16 O -0.354 6.354 17 Si 0.797 3.203 18 H -0.194 1.194 19 H -0.181 1.181 20 H -0.173 1.173 21 C -0.104 4.104 22 C -0.149 4.149 23 C 0.456 3.544 24 F -0.159 7.159 25 F -0.160 7.160 26 F -0.159 7.159 27 C -0.182 4.182 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.161 0.839 48 H 0.153 0.847 49 H 0.241 0.759 50 H 0.164 0.836 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.462 2.985 0.918 3.977 hybrid contribution -0.213 0.378 0.843 0.948 sum 2.248 3.363 1.761 4.412 Atomic orbital electron populations 1.21535 0.94292 1.01665 1.01842 1.25968 1.00376 1.03038 1.13319 1.21599 1.01231 0.94714 1.02208 1.21531 1.00934 0.99908 0.96984 0.76147 0.62306 0.52661 0.64076 1.27069 1.06953 1.09836 1.17959 1.27121 1.25535 1.04874 1.04488 1.85401 1.79410 1.46670 1.48246 1.22385 1.00109 0.89271 0.88345 1.23418 0.99619 0.92603 0.87650 1.86175 1.64964 1.22717 1.48571 1.18769 0.93485 0.84776 0.94013 1.20710 1.02621 0.94410 0.97715 1.20160 0.96587 0.93295 0.97725 1.25017 1.03349 0.93249 0.96957 1.86519 1.50115 1.29887 1.68863 0.85340 0.78461 0.77342 0.79193 1.19406 1.18126 1.17267 1.20756 0.96042 1.00755 0.92822 1.19770 1.00578 0.96233 0.98317 1.18303 0.80342 0.76575 0.79156 1.93167 1.92384 1.68004 1.62307 1.93231 1.53672 1.92065 1.77080 1.93231 1.84466 1.52307 1.85922 1.21233 0.99922 0.94822 1.02241 0.91883 0.93549 0.92669 0.91888 0.93298 0.91660 0.92781 0.93485 0.92218 0.90534 0.90460 0.91010 0.91551 0.90487 0.90845 0.87633 0.90519 0.90179 0.88131 0.83907 0.84663 0.75931 0.83631 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.02 7.85 71.98 0.56 0.54 16 2 C -0.38 0.32 0.53 -10.79 -0.01 0.32 16 3 C -0.14 0.23 7.85 71.98 0.56 0.80 16 4 C -0.14 -0.13 7.85 71.98 0.56 0.43 16 5 Si 1.32 -4.98 8.45 68.60 0.58 -4.40 16 6 C -0.52 2.28 8.50 113.37 0.96 3.24 16 7 C -0.52 1.48 8.50 113.37 0.96 2.44 16 8 O -0.64 0.76 8.52 -144.34 -1.23 -0.47 16 9 C 0.07 -0.40 5.50 71.98 0.40 -0.01 16 10 C 0.04 -0.18 5.12 71.98 0.37 0.19 16 11 O -0.31 -0.43 10.10 -87.79 -0.89 -1.31 16 12 C 0.14 0.18 6.69 22.51 0.15 0.33 16 13 C -0.14 -0.08 8.61 22.37 0.19 0.11 16 14 C -0.08 0.05 5.39 -19.88 -0.11 -0.06 16 15 C -0.08 0.22 2.82 71.24 0.20 0.42 16 16 O -0.55 0.97 12.77 -148.98 -1.90 -0.93 16 17 Si 0.97 -2.11 25.07 68.60 1.72 -0.39 16 18 H -0.27 -0.28 7.11 99.48 0.71 0.43 16 19 H -0.26 0.11 7.11 99.48 0.71 0.82 16 20 H -0.25 0.52 7.11 99.48 0.71 1.23 16 21 C -0.09 -0.06 9.16 22.28 0.20 0.14 16 22 C -0.15 -0.26 5.37 -19.88 -0.11 -0.36 16 23 C 0.51 1.63 3.32 71.23 0.24 1.86 16 24 F -0.18 -0.53 15.97 44.97 0.72 0.19 16 25 F -0.18 -0.89 17.23 44.97 0.77 -0.12 16 26 F -0.18 -0.83 17.24 44.97 0.78 -0.06 16 27 C -0.16 -0.04 8.42 22.37 0.19 0.15 16 28 H 0.06 -0.11 7.79 -2.39 -0.02 -0.13 16 29 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.05 0.05 7.97 -2.38 -0.02 0.04 16 31 H 0.06 -0.19 7.79 -2.38 -0.02 -0.21 16 32 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 34 H 0.05 0.12 7.96 -2.39 -0.02 0.10 16 35 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 36 H 0.06 -0.02 7.79 -2.38 -0.02 -0.04 16 37 H 0.08 -0.48 7.48 -2.38 -0.02 -0.50 16 38 H 0.08 -0.34 7.79 -2.38 -0.02 -0.36 16 39 H 0.07 -0.27 7.79 -2.39 -0.02 -0.28 16 40 H 0.07 -0.08 7.79 -2.39 -0.02 -0.10 16 41 H 0.08 -0.26 7.79 -2.39 -0.02 -0.28 16 42 H 0.07 -0.31 7.48 -2.39 -0.02 -0.33 16 43 H 0.11 -1.15 7.21 -2.39 -0.02 -1.17 16 44 H 0.08 -0.55 7.21 -2.39 -0.02 -0.57 16 45 H 0.08 -0.39 7.66 -2.39 -0.02 -0.41 16 46 H 0.10 -0.91 7.66 -2.39 -0.02 -0.93 16 47 H 0.14 -0.14 4.88 -2.91 -0.01 -0.15 16 48 H 0.14 -0.68 7.96 -2.39 -0.02 -0.70 16 49 H 0.39 -3.18 8.70 -74.05 -0.64 -3.82 16 50 H 0.15 -0.06 8.06 -2.91 -0.02 -0.08 16 51 H 0.16 -0.52 5.40 -2.91 -0.02 -0.53 16 Total: 0.00 -12.02 420.54 6.94 -5.08 By element: Atomic # 1 Polarization: -9.18 SS G_CDS: 1.05 Total: -8.13 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.34 Total: 10.55 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: -4.02 Total: -2.72 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 2.27 Total: 0.01 kcal Atomic # 14 Polarization: -7.09 SS G_CDS: 2.30 Total: -4.79 kcal Total: -12.02 6.94 -5.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10339940_10902662.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -283.166 kcal (2) G-P(sol) polarization free energy of solvation -12.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -295.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -288.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds