Wall clock time and date at job start Mon Mar 8 2021 08:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86298 * 109.46768 * 2 1 4 4 C 1.50696 * 109.47141 * 120.00082 * 2 1 3 5 5 C 1.38130 * 119.96831 * 245.30101 * 4 2 1 6 6 C 1.38756 * 119.93955 * 180.30111 * 5 4 2 7 7 O 1.35904 * 120.05262 * 179.69902 * 6 5 4 8 8 C 1.42903 * 116.99628 * 179.72512 * 7 6 5 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 6 10 10 H 1.08996 * 112.85005 * 316.18751 * 9 8 7 11 11 C 1.53775 * 113.61825 * 87.50378 * 9 8 7 12 12 C 1.53776 * 87.08393 * 139.97637 * 11 9 8 13 13 H 1.09006 * 113.61153 * 89.11954 * 12 11 9 14 14 O 1.42899 * 113.69324 * 220.00321 * 12 11 9 15 15 C 1.53774 * 87.08069 * 334.56900 * 12 11 9 16 16 C 1.38713 * 119.89066 * 359.42138 * 6 5 4 17 17 C 1.38166 * 119.94316 * 0.27705 * 16 6 5 18 18 C 1.50698 * 119.97194 * 179.97438 * 17 16 6 19 19 F 1.39894 * 109.47310 * 0.02562 * 18 17 16 20 20 F 1.39908 * 109.46673 * 120.00363 * 18 17 16 21 21 F 1.39899 * 109.47172 * 240.00238 * 18 17 16 22 22 C 1.38250 * 120.05469 * 359.97438 * 17 16 6 23 23 H 0.96696 * 114.00121 * 299.99691 * 1 2 3 24 24 H 1.09005 * 109.46849 * 240.00340 * 2 1 3 25 25 H 1.48494 * 110.00085 * 178.68371 * 3 2 1 26 26 H 1.48498 * 110.00057 * 300.00242 * 3 2 1 27 27 H 1.07994 * 120.02897 * 0.02562 * 5 4 2 28 28 H 1.09002 * 109.47382 * 59.99787 * 8 7 6 29 29 H 1.09001 * 109.46938 * 299.99774 * 8 7 6 30 30 H 1.09005 * 113.61502 * 254.53312 * 11 9 8 31 31 H 1.08999 * 113.61676 * 25.42734 * 11 9 8 32 32 H 0.96701 * 114.00290 * 277.54013 * 14 12 11 33 33 H 1.09006 * 113.61277 * 270.88016 * 15 12 11 34 34 H 1.09006 * 113.61790 * 139.97929 * 15 12 11 35 35 H 1.07995 * 120.02940 * 180.30208 * 16 6 5 36 36 H 1.08005 * 119.94140 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6328 -0.0108 2.1930 6 6 3.1005 -0.6669 3.3227 7 8 3.7961 0.0179 4.2683 8 6 4.2416 -0.7207 5.4077 9 6 4.9996 0.2114 6.3551 10 1 5.6908 0.8737 5.8339 11 6 4.0923 0.9351 7.3639 12 6 5.1945 0.6941 8.4088 13 1 5.9386 1.4897 8.4500 14 8 4.6946 0.3347 9.6984 15 6 5.6281 -0.5114 7.5582 16 6 2.8518 -2.0215 3.4881 17 6 2.1443 -2.7153 2.5253 18 6 1.8743 -4.1871 2.7040 19 9 2.4336 -4.6207 3.9107 20 9 0.4930 -4.4087 2.7244 21 9 2.4450 -4.8982 1.6429 22 6 1.6839 -2.0605 1.3981 23 1 -0.3933 0.4416 0.7650 24 1 1.7924 -0.5138 -0.8901 25 1 3.5345 1.7704 0.0321 26 1 1.5613 2.4679 -1.2084 27 1 2.8209 1.0448 2.0643 28 1 4.9018 -1.5253 5.0838 29 1 3.3809 -1.1433 5.9260 30 1 3.9337 1.9882 7.1314 31 1 3.1650 0.4034 7.5770 32 1 4.4203 1.0888 10.2381 33 1 5.1206 -1.4386 7.8243 34 1 6.7094 -0.6261 7.4825 35 1 3.2105 -2.5332 4.3688 36 1 1.1314 -2.6048 0.6464 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_10339940_11354860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:49:30 Heat of formation + Delta-G solvation = -213.608398 kcal Electronic energy + Delta-G solvation = -25183.789410 eV Core-core repulsion = 20800.017395 eV Total energy + Delta-G solvation = -4383.772015 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.096 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.15796 -48.68475 -48.60288 -41.72280 -40.52394 -39.15569 -37.52796 -36.12047 -33.63021 -31.81816 -29.48144 -27.29504 -27.12785 -26.88881 -24.00405 -23.33280 -22.25278 -20.80746 -19.84977 -19.48494 -19.47470 -18.65142 -18.13893 -17.80307 -17.51835 -17.18797 -16.98129 -16.47052 -16.15941 -15.76325 -15.61458 -15.50601 -15.26745 -15.04603 -14.81143 -14.77958 -14.76076 -14.45717 -14.13525 -13.80837 -13.64633 -13.60044 -13.40109 -12.91368 -12.69720 -12.51499 -12.42449 -12.13245 -12.02760 -11.88310 -11.39810 -10.88051 -10.66242 -10.39878 -9.55450 -5.12577 -0.38828 0.00475 1.13561 1.54984 1.57826 1.82696 1.88843 2.15554 2.62911 2.93855 3.09371 3.27936 3.29653 3.38084 3.39593 3.44663 3.62177 3.65820 3.76449 3.83728 3.91900 3.98032 4.04828 4.09057 4.21015 4.27067 4.45149 4.49469 4.62300 4.63641 4.80692 4.82416 4.87949 4.96096 5.02468 5.18677 5.27619 6.08127 6.43220 6.60112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.068 4.068 3 Si 0.688 3.312 4 C -0.081 4.081 5 C -0.118 4.118 6 C 0.141 3.859 7 O -0.304 6.304 8 C 0.066 3.934 9 C -0.109 4.109 10 H 0.107 0.893 11 C -0.164 4.164 12 C 0.076 3.924 13 H 0.085 0.915 14 O -0.560 6.560 15 C -0.121 4.121 16 C -0.162 4.162 17 C -0.140 4.140 18 C 0.509 3.491 19 F -0.176 7.176 20 F -0.172 7.172 21 F -0.173 7.173 22 C -0.081 4.081 23 H 0.381 0.619 24 H 0.121 0.879 25 H -0.254 1.254 26 H -0.250 1.250 27 H 0.145 0.855 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.381 0.619 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.976 4.519 2.716 5.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.179 4.179 3 Si 0.589 3.411 4 C -0.082 4.082 5 C -0.136 4.136 6 C 0.095 3.905 7 O -0.217 6.217 8 C -0.008 4.008 9 C -0.128 4.128 10 H 0.126 0.874 11 C -0.201 4.201 12 C 0.017 3.983 13 H 0.103 0.897 14 O -0.366 6.366 15 C -0.158 4.158 16 C -0.180 4.180 17 C -0.141 4.141 18 C 0.455 3.545 19 F -0.158 7.158 20 F -0.153 7.153 21 F -0.155 7.155 22 C -0.099 4.099 23 H 0.229 0.771 24 H 0.138 0.862 25 H -0.179 1.179 26 H -0.175 1.175 27 H 0.162 0.838 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.229 0.771 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.164 0.836 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.736 4.364 1.539 4.943 hybrid contribution -0.037 -0.652 0.170 0.675 sum 1.699 3.712 1.709 4.426 Atomic orbital electron populations 1.86542 1.16525 1.81686 1.49294 1.25109 0.85627 1.10387 0.96784 0.94698 0.81363 0.77534 0.87547 1.20119 0.97758 0.93852 0.96425 1.20482 1.00275 1.00388 0.92433 1.18653 0.92599 0.89722 0.89564 1.86118 1.67780 1.37858 1.29976 1.22958 0.98443 0.94696 0.84737 1.22329 0.98644 0.98385 0.93406 0.87444 1.23786 0.98690 1.01737 0.95908 1.23279 0.95476 0.97508 0.82042 0.89705 1.86527 1.84970 1.37348 1.27706 1.23081 1.01616 0.98421 0.92718 1.21120 1.02139 0.93943 1.00831 1.19766 1.04285 0.91683 0.98407 1.18228 0.74553 0.87782 0.73979 1.93177 1.85242 1.91212 1.46136 1.93250 1.30319 1.95645 1.96126 1.93243 1.84697 1.80680 1.56833 1.20674 0.98644 0.94222 0.96355 0.77117 0.86195 1.17880 1.17452 0.83779 0.91257 0.91194 0.90605 0.88987 0.77134 0.88724 0.90027 0.83622 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.38 12.83 -35.23 -0.45 -0.07 16 2 C -0.07 0.08 2.80 36.00 0.10 0.18 16 3 Si 0.69 -1.27 29.80 -169.99 -5.07 -6.34 16 4 C -0.08 0.05 5.35 -104.65 -0.56 -0.51 16 5 C -0.12 0.09 8.61 -39.43 -0.34 -0.25 16 6 C 0.14 0.01 6.69 -39.21 -0.26 -0.26 16 7 O -0.30 0.04 10.14 -19.44 -0.20 -0.16 16 8 C 0.07 -0.12 4.58 37.16 0.17 0.05 16 9 C -0.11 0.24 4.01 -89.81 -0.36 -0.12 16 10 H 0.11 -0.27 8.14 -51.93 -0.42 -0.69 16 11 C -0.16 0.33 7.46 -25.92 -0.19 0.14 16 12 C 0.08 -0.13 5.21 -25.93 -0.14 -0.26 16 13 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 14 O -0.56 0.11 13.67 -35.23 -0.48 -0.37 16 15 C -0.12 0.23 7.47 -25.92 -0.19 0.03 16 16 C -0.16 -0.03 8.42 -39.43 -0.33 -0.36 16 17 C -0.14 -0.13 5.37 -104.64 -0.56 -0.69 16 18 C 0.51 0.88 3.32 36.00 0.12 1.00 16 19 F -0.18 -0.33 15.97 2.25 0.04 -0.29 16 20 F -0.17 -0.43 17.24 2.25 0.04 -0.39 16 21 F -0.17 -0.44 17.24 2.25 0.04 -0.40 16 22 C -0.08 -0.03 9.23 -39.56 -0.37 -0.40 16 23 H 0.38 -1.74 8.70 45.56 0.40 -1.34 16 24 H 0.12 -0.12 7.96 -51.93 -0.41 -0.54 16 25 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 26 H -0.25 -0.34 7.11 56.52 0.40 0.07 16 27 H 0.15 -0.36 4.91 -52.49 -0.26 -0.62 16 28 H 0.07 -0.17 7.66 -51.93 -0.40 -0.56 16 29 H 0.07 -0.15 7.36 -51.93 -0.38 -0.53 16 30 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 31 H 0.09 -0.13 7.89 -51.93 -0.41 -0.54 16 32 H 0.38 -1.57 9.12 45.56 0.42 -1.15 16 33 H 0.09 -0.12 8.10 -51.93 -0.42 -0.54 16 34 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 35 H 0.15 -0.15 5.40 -52.49 -0.28 -0.43 16 36 H 0.14 0.01 8.06 -52.48 -0.42 -0.41 16 LS Contribution 317.35 15.07 4.78 4.78 Total: 0.00 -6.34 317.35 -7.28 -13.62 By element: Atomic # 1 Polarization: -5.88 SS G_CDS: -3.06 Total: -8.94 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -2.91 Total: -1.43 kcal Atomic # 8 Polarization: 0.53 SS G_CDS: -1.13 Total: -0.60 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.11 Total: -1.09 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: -5.07 Total: -6.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -6.34 -7.28 -13.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10339940_11354860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.986 kcal (2) G-P(sol) polarization free energy of solvation -6.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds