Wall clock time and date at job start Mon Mar 8 2021 08:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86298 * 109.46768 * 2 1 4 4 C 1.50696 * 109.47141 * 120.00082 * 2 1 3 5 5 C 1.38130 * 119.96831 * 245.30101 * 4 2 1 6 6 C 1.38756 * 119.93955 * 180.30111 * 5 4 2 7 7 O 1.35904 * 120.05262 * 179.69902 * 6 5 4 8 8 C 1.42903 * 116.99628 * 179.72512 * 7 6 5 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 6 10 10 H 1.08996 * 112.85005 * 316.18751 * 9 8 7 11 11 C 1.53775 * 113.61825 * 87.50378 * 9 8 7 12 12 C 1.53776 * 87.08393 * 139.97637 * 11 9 8 13 13 H 1.09006 * 113.61153 * 89.11954 * 12 11 9 14 14 O 1.42899 * 113.69324 * 220.00321 * 12 11 9 15 15 C 1.53774 * 87.08069 * 334.56900 * 12 11 9 16 16 C 1.38713 * 119.89066 * 359.42138 * 6 5 4 17 17 C 1.38166 * 119.94316 * 0.27705 * 16 6 5 18 18 C 1.50698 * 119.97194 * 179.97438 * 17 16 6 19 19 F 1.39894 * 109.47310 * 0.02562 * 18 17 16 20 20 F 1.39908 * 109.46673 * 120.00363 * 18 17 16 21 21 F 1.39899 * 109.47172 * 240.00238 * 18 17 16 22 22 C 1.38250 * 120.05469 * 359.97438 * 17 16 6 23 23 H 0.96696 * 114.00121 * 299.99691 * 1 2 3 24 24 H 1.09005 * 109.46849 * 240.00340 * 2 1 3 25 25 H 1.48494 * 110.00085 * 178.68371 * 3 2 1 26 26 H 1.48498 * 110.00057 * 300.00242 * 3 2 1 27 27 H 1.07994 * 120.02897 * 0.02562 * 5 4 2 28 28 H 1.09002 * 109.47382 * 59.99787 * 8 7 6 29 29 H 1.09001 * 109.46938 * 299.99774 * 8 7 6 30 30 H 1.09005 * 113.61502 * 254.53312 * 11 9 8 31 31 H 1.08999 * 113.61676 * 25.42734 * 11 9 8 32 32 H 0.96701 * 114.00290 * 277.54013 * 14 12 11 33 33 H 1.09006 * 113.61277 * 270.88016 * 15 12 11 34 34 H 1.09006 * 113.61790 * 139.97929 * 15 12 11 35 35 H 1.07995 * 120.02940 * 180.30208 * 16 6 5 36 36 H 1.08005 * 119.94140 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6328 -0.0108 2.1930 6 6 3.1005 -0.6669 3.3227 7 8 3.7961 0.0179 4.2683 8 6 4.2416 -0.7207 5.4077 9 6 4.9996 0.2114 6.3551 10 1 5.6908 0.8737 5.8339 11 6 4.0923 0.9351 7.3639 12 6 5.1945 0.6941 8.4088 13 1 5.9386 1.4897 8.4500 14 8 4.6946 0.3347 9.6984 15 6 5.6281 -0.5114 7.5582 16 6 2.8518 -2.0215 3.4881 17 6 2.1443 -2.7153 2.5253 18 6 1.8743 -4.1871 2.7040 19 9 2.4336 -4.6207 3.9107 20 9 0.4930 -4.4087 2.7244 21 9 2.4450 -4.8982 1.6429 22 6 1.6839 -2.0605 1.3981 23 1 -0.3933 0.4416 0.7650 24 1 1.7924 -0.5138 -0.8901 25 1 3.5345 1.7704 0.0321 26 1 1.5613 2.4679 -1.2084 27 1 2.8209 1.0448 2.0643 28 1 4.9018 -1.5253 5.0838 29 1 3.3809 -1.1433 5.9260 30 1 3.9337 1.9882 7.1314 31 1 3.1650 0.4034 7.5770 32 1 4.4203 1.0888 10.2381 33 1 5.1206 -1.4386 7.8243 34 1 6.7094 -0.6261 7.4825 35 1 3.2105 -2.5332 4.3688 36 1 1.1314 -2.6048 0.6464 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10339940_11354860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:49:29 Heat of formation + Delta-G solvation = -211.648503 kcal Electronic energy + Delta-G solvation = -25183.704423 eV Core-core repulsion = 20800.017395 eV Total energy + Delta-G solvation = -4383.687028 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.096 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.31564 -48.84035 -48.77764 -41.66305 -40.38656 -39.07477 -37.45808 -36.01244 -33.61223 -31.76883 -29.36994 -27.35871 -27.05953 -26.71420 -23.88570 -23.34216 -22.20598 -20.65562 -19.82923 -19.63722 -19.59616 -18.53744 -18.13756 -17.76441 -17.46576 -17.08117 -16.91396 -16.33492 -16.05876 -15.74987 -15.67443 -15.59932 -15.30076 -15.21627 -14.94799 -14.93720 -14.69197 -14.42323 -14.08361 -13.86052 -13.57435 -13.44406 -13.35788 -12.84969 -12.57582 -12.43482 -12.31980 -12.05351 -12.04557 -11.72642 -11.21882 -10.72686 -10.59626 -10.35423 -9.52364 -5.00596 -0.37260 0.02228 1.23350 1.48391 1.63583 1.91672 1.95809 2.17432 2.53192 2.84735 3.24918 3.28172 3.39428 3.45287 3.56378 3.59157 3.70201 3.80324 3.86436 3.94743 4.00618 4.05298 4.22139 4.23258 4.31262 4.40812 4.50789 4.68457 4.77962 4.82046 4.84808 4.90476 5.00760 5.05946 5.13337 5.28409 5.40837 6.15042 6.72963 6.88982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.072 4.072 3 Si 0.773 3.227 4 C -0.078 4.078 5 C -0.116 4.116 6 C 0.135 3.865 7 O -0.309 6.309 8 C 0.062 3.938 9 C -0.103 4.103 10 H 0.113 0.887 11 C -0.161 4.161 12 C 0.072 3.928 13 H 0.099 0.901 14 O -0.583 6.583 15 C -0.124 4.124 16 C -0.165 4.165 17 C -0.149 4.149 18 C 0.509 3.491 19 F -0.178 7.178 20 F -0.178 7.178 21 F -0.180 7.180 22 C -0.089 4.089 23 H 0.398 0.602 24 H 0.117 0.883 25 H -0.283 1.283 26 H -0.294 1.294 27 H 0.162 0.838 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.395 0.605 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.154 0.846 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 5.262 3.015 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.182 4.182 3 Si 0.678 3.322 4 C -0.079 4.079 5 C -0.134 4.134 6 C 0.089 3.911 7 O -0.223 6.223 8 C -0.013 4.013 9 C -0.121 4.121 10 H 0.131 0.869 11 C -0.199 4.199 12 C 0.013 3.987 13 H 0.116 0.884 14 O -0.391 6.391 15 C -0.162 4.162 16 C -0.183 4.183 17 C -0.150 4.150 18 C 0.455 3.545 19 F -0.159 7.159 20 F -0.159 7.159 21 F -0.161 7.161 22 C -0.107 4.107 23 H 0.248 0.752 24 H 0.135 0.865 25 H -0.210 1.210 26 H -0.222 1.222 27 H 0.179 0.821 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.245 0.755 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.171 0.829 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.932 5.102 1.872 5.768 hybrid contribution -0.108 -0.876 0.070 0.886 sum 1.824 4.226 1.942 4.996 Atomic orbital electron populations 1.86508 1.16646 1.82150 1.50553 1.25224 0.85654 1.10923 0.96397 0.93710 0.78176 0.75016 0.85254 1.20158 0.97601 0.93462 0.96636 1.20682 0.99559 1.01214 0.91950 1.18757 0.92731 0.89699 0.89893 1.86108 1.67737 1.38191 1.30253 1.23077 0.98763 0.94966 0.84451 1.22292 0.98514 0.98209 0.93108 0.86889 1.23742 0.98291 1.01958 0.95889 1.23422 0.95853 0.97860 0.81567 0.88368 1.86482 1.85204 1.38907 1.28544 1.23103 1.01962 0.98154 0.92976 1.21223 1.01980 0.94187 1.00944 1.19739 1.05160 0.91084 0.99019 1.18344 0.74192 0.88275 0.73707 1.93168 1.85232 1.91312 1.46210 1.93233 1.30836 1.95739 1.96142 1.93225 1.84772 1.80950 1.57162 1.20766 0.98867 0.94770 0.96306 0.75213 0.86538 1.20969 1.22171 0.82098 0.90641 0.90947 0.90038 0.89841 0.75490 0.89580 0.89404 0.82870 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.00 12.83 -148.98 -1.91 -0.91 16 2 C -0.07 0.19 2.80 71.23 0.20 0.39 16 3 Si 0.77 -3.11 29.80 68.60 2.04 -1.07 16 4 C -0.08 0.11 5.35 -19.88 -0.11 0.00 16 5 C -0.12 0.26 8.61 22.37 0.19 0.45 16 6 C 0.14 -0.04 6.69 22.51 0.15 0.11 16 7 O -0.31 0.26 10.14 -92.47 -0.94 -0.67 16 8 C 0.06 -0.23 4.58 71.98 0.33 0.10 16 9 C -0.10 0.51 4.01 -10.27 -0.04 0.46 16 10 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 11 C -0.16 0.71 7.46 31.12 0.23 0.94 16 12 C 0.07 -0.26 5.21 31.12 0.16 -0.10 16 13 H 0.10 -0.65 8.14 -2.38 -0.02 -0.67 16 14 O -0.58 0.20 13.67 -148.98 -2.04 -1.84 16 15 C -0.12 0.48 7.47 31.12 0.23 0.71 16 16 C -0.16 -0.06 8.42 22.37 0.19 0.13 16 17 C -0.15 -0.32 5.37 -19.88 -0.11 -0.43 16 18 C 0.51 2.10 3.32 71.24 0.24 2.34 16 19 F -0.18 -0.76 15.97 44.97 0.72 -0.04 16 20 F -0.18 -1.02 17.24 44.97 0.78 -0.24 16 21 F -0.18 -1.05 17.24 44.97 0.78 -0.28 16 22 C -0.09 -0.10 9.23 22.28 0.21 0.11 16 23 H 0.40 -3.94 8.70 -74.06 -0.64 -4.58 16 24 H 0.12 -0.23 7.96 -2.38 -0.02 -0.25 16 25 H -0.28 -0.24 7.11 99.48 0.71 0.47 16 26 H -0.29 -1.00 7.11 99.48 0.71 -0.30 16 27 H 0.16 -1.00 4.91 -2.91 -0.01 -1.02 16 28 H 0.08 -0.38 7.66 -2.39 -0.02 -0.40 16 29 H 0.07 -0.31 7.36 -2.39 -0.02 -0.33 16 30 H 0.08 -0.45 8.14 -2.38 -0.02 -0.47 16 31 H 0.08 -0.21 7.89 -2.39 -0.02 -0.23 16 32 H 0.40 -3.25 9.12 -74.06 -0.68 -3.93 16 33 H 0.09 -0.18 8.10 -2.38 -0.02 -0.20 16 34 H 0.09 -0.46 8.14 -2.38 -0.02 -0.48 16 35 H 0.15 -0.29 5.40 -2.91 -0.02 -0.30 16 36 H 0.14 0.11 8.06 -2.91 -0.02 0.09 16 Total: 0.00 -14.32 317.35 1.17 -13.15 By element: Atomic # 1 Polarization: -13.17 SS G_CDS: -0.13 Total: -13.30 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: 1.88 Total: 5.20 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: -4.89 Total: -3.42 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 2.27 Total: -0.56 kcal Atomic # 14 Polarization: -3.11 SS G_CDS: 2.04 Total: -1.07 kcal Total: -14.32 1.17 -13.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10339940_11354860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.497 kcal (2) G-P(sol) polarization free energy of solvation -14.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds