Wall clock time and date at job start Mon Mar 8 2021 09:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 C 1.53002 * 109.46931 * 240.00008 * 2 1 3 5 5 Si 1.86297 * 109.46740 * 119.99985 * 2 1 3 6 6 C 1.86304 * 109.47278 * 299.99703 * 5 2 1 7 7 C 1.86309 * 109.46903 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47345 * 60.00279 * 5 2 1 9 9 C 1.42900 * 113.99948 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.46964 * 179.97438 * 9 8 5 11 11 C 1.53003 * 109.46971 * 180.02562 * 10 9 8 12 12 O 1.42903 * 109.47156 * 180.02562 * 11 10 9 13 13 C 1.35900 * 116.99987 * 179.97438 * 12 11 10 14 14 C 1.38712 * 120.05227 * 180.02562 * 13 12 11 15 15 C 1.38162 * 119.94343 * 180.02562 * 14 13 12 16 16 C 1.50701 * 119.97405 * 179.97438 * 15 14 13 17 17 O 1.42905 * 109.46937 * 120.00073 * 16 15 14 18 18 Si 1.86301 * 109.47149 * 0.02562 * 16 15 14 19 19 H 1.48492 * 109.47150 * 179.97438 * 18 16 15 20 20 H 1.48496 * 109.46781 * 299.99883 * 18 16 15 21 21 H 1.48503 * 109.46998 * 59.99699 * 18 16 15 22 22 C 1.38251 * 120.05560 * 0.24937 * 15 14 13 23 23 C 1.38288 * 120.10848 * 359.49525 * 22 15 14 24 24 C 1.50697 * 119.97243 * 180.28053 * 23 22 15 25 25 F 1.39900 * 109.47119 * 180.23241 * 24 23 22 26 26 F 1.39907 * 109.46949 * 300.22604 * 24 23 22 27 27 F 1.39899 * 109.47460 * 60.22338 * 24 23 22 28 28 C 1.38122 * 120.05740 * 0.50615 * 23 22 15 29 29 H 1.09000 * 109.47406 * 299.99926 * 1 2 3 30 30 H 1.09001 * 109.46998 * 60.00370 * 1 2 3 31 31 H 1.09000 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47422 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46948 * 300.00176 * 3 2 1 34 34 H 1.09000 * 109.46894 * 59.99760 * 3 2 1 35 35 H 1.08997 * 109.46907 * 299.99624 * 4 2 1 36 36 H 1.08998 * 109.47337 * 60.00443 * 4 2 1 37 37 H 1.08997 * 109.46605 * 180.02562 * 4 2 1 38 38 H 1.09004 * 109.46768 * 180.02562 * 6 5 2 39 39 H 1.08994 * 109.46738 * 300.00289 * 6 5 2 40 40 H 1.08997 * 109.46666 * 60.00290 * 6 5 2 41 41 H 1.09005 * 109.46834 * 299.99922 * 7 5 2 42 42 H 1.08997 * 109.47018 * 59.99478 * 7 5 2 43 43 H 1.08998 * 109.46911 * 180.02562 * 7 5 2 44 44 H 1.09003 * 109.47166 * 59.99962 * 9 8 5 45 45 H 1.09001 * 109.47472 * 299.99422 * 9 8 5 46 46 H 1.09003 * 109.47024 * 60.00103 * 10 9 8 47 47 H 1.08996 * 109.47255 * 299.99606 * 10 9 8 48 48 H 1.08997 * 109.47582 * 60.00015 * 11 10 9 49 49 H 1.09003 * 109.46958 * 299.99580 * 11 10 9 50 50 H 1.08002 * 120.03097 * 0.04058 * 14 13 12 51 51 H 1.09001 * 109.46927 * 239.99818 * 16 15 14 52 52 H 0.96705 * 113.99788 * 300.00011 * 17 16 15 53 53 H 1.07996 * 119.94384 * 179.72436 * 22 15 14 54 54 H 1.08002 * 120.03165 * 179.77344 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 14 2.1509 -0.8782 1.5211 6 6 1.5299 0.0001 3.0423 7 6 4.0140 -0.8776 1.5216 8 8 1.6073 -2.4159 1.5211 9 6 2.0294 -3.1816 2.6515 10 6 1.4635 -4.5993 2.5471 11 6 1.9149 -5.4189 3.7577 12 8 1.3868 -6.7432 3.6600 13 6 1.6964 -7.6064 4.6630 14 6 1.2178 -8.9080 4.6318 15 6 1.5335 -9.7835 5.6529 16 6 1.0134 -11.1976 5.6200 17 8 2.1135 -12.1096 5.6095 18 14 -0.0132 -11.4461 4.0853 19 1 -0.5251 -12.8396 4.0526 20 1 -1.1563 -10.4984 4.0957 21 1 0.8243 -11.1985 2.8842 22 6 2.3214 -9.3618 6.7077 23 6 2.8041 -8.0663 6.7385 24 6 3.6679 -7.6117 7.8866 25 9 4.0262 -6.2725 7.6989 26 9 2.9568 -7.7406 9.0846 27 9 4.8222 -8.4001 7.9424 28 6 2.4913 -7.1871 5.7201 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2490 38 1 1.8936 -0.5136 3.9323 39 1 1.8933 1.0276 3.0422 40 1 0.4400 0.0001 3.0422 41 1 4.3777 -1.3912 0.6316 42 1 4.3769 0.1502 1.5217 43 1 4.3772 -1.3918 2.4113 44 1 1.6652 -2.7118 3.5651 45 1 3.1182 -3.2256 2.6745 46 1 1.8273 -5.0694 1.6335 47 1 0.3746 -4.5551 2.5244 48 1 1.5508 -4.9487 4.6711 49 1 3.0037 -5.4632 3.7809 50 1 0.5991 -9.2368 3.8099 51 1 0.3991 -11.3794 6.5019 52 1 2.7040 -12.0049 4.8508 53 1 2.5633 -10.0464 7.5072 54 1 2.8655 -6.1744 5.7464 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10339940_18527726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:40:44 Heat of formation + Delta-G solvation = -294.669811 kcal Electronic energy + Delta-G solvation = -35171.080847 eV Core-core repulsion = 30009.662688 eV Total energy + Delta-G solvation = -5161.418159 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 394.175 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -51.26678 -48.79031 -48.72808 -41.59559 -39.47797 -38.18800 -37.43145 -36.82808 -33.91099 -33.33367 -31.31541 -29.37763 -29.05896 -27.84690 -27.62823 -27.37781 -27.26572 -26.25708 -23.38101 -23.02368 -22.05810 -20.42265 -19.90775 -19.58633 -19.54645 -18.25951 -18.01186 -17.64848 -17.52565 -17.33313 -16.78946 -16.31747 -16.03468 -15.93677 -15.90891 -15.62519 -15.50069 -15.25771 -15.16562 -14.97282 -14.88600 -14.86361 -14.85638 -14.73827 -14.35749 -14.23334 -13.94265 -13.85388 -13.55495 -13.39269 -13.34558 -13.20181 -13.05396 -13.02624 -12.95380 -12.92285 -12.69534 -12.39650 -12.36942 -12.17504 -12.02838 -11.95123 -11.78721 -11.69794 -11.69039 -11.35964 -11.29491 -10.59625 -10.30974 -10.30207 -10.05665 -9.50839 -0.36148 0.04652 1.12904 1.40465 1.47004 1.51956 1.53207 1.78594 1.92310 2.02447 2.12867 2.19194 2.51434 2.57049 2.89042 3.29526 3.40040 3.58805 3.68877 3.85569 3.88085 3.92100 4.00655 4.05080 4.12047 4.12594 4.16957 4.32956 4.34428 4.41098 4.46544 4.48540 4.61346 4.74590 4.74735 4.78473 4.79683 4.82461 4.82757 4.83714 4.92932 5.00107 5.05670 5.06024 5.07113 5.09200 5.09625 5.21772 5.33513 5.34983 5.41029 5.44659 5.54927 5.61049 5.64972 6.16348 6.67509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.385 4.385 3 C -0.141 4.141 4 C -0.137 4.137 5 Si 1.319 2.681 6 C -0.519 4.519 7 C -0.518 4.518 8 O -0.640 6.640 9 C 0.078 3.922 10 C -0.120 4.120 11 C 0.048 3.952 12 O -0.318 6.318 13 C 0.134 3.866 14 C -0.134 4.134 15 C -0.077 4.077 16 C -0.076 4.076 17 O -0.547 6.547 18 Si 0.976 3.024 19 H -0.271 1.271 20 H -0.255 1.255 21 H -0.251 1.251 22 C -0.083 4.083 23 C -0.148 4.148 24 C 0.510 3.490 25 F -0.177 7.177 26 F -0.179 7.179 27 F -0.178 7.178 28 C -0.162 4.162 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.145 0.855 51 H 0.137 0.863 52 H 0.391 0.609 53 H 0.146 0.854 54 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.006 1.273 -1.018 1.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.427 4.427 3 C -0.198 4.198 4 C -0.194 4.194 5 Si 1.449 2.551 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.599 6.599 9 C 0.002 3.998 10 C -0.158 4.158 11 C -0.027 4.027 12 O -0.232 6.232 13 C 0.088 3.912 14 C -0.152 4.152 15 C -0.078 4.078 16 C -0.187 4.187 17 O -0.354 6.354 18 Si 0.800 3.200 19 H -0.196 1.196 20 H -0.179 1.179 21 H -0.174 1.174 22 C -0.102 4.102 23 C -0.149 4.149 24 C 0.456 3.544 25 F -0.158 7.158 26 F -0.160 7.160 27 F -0.160 7.160 28 C -0.180 4.180 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.162 0.838 51 H 0.154 0.846 52 H 0.241 0.759 53 H 0.164 0.836 54 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.027 0.770 -1.521 1.990 hybrid contribution 0.943 1.088 0.227 1.458 sum -0.084 1.858 -1.294 2.266 Atomic orbital electron populations 1.21543 0.94328 1.01748 1.01810 1.25961 1.00368 1.03063 1.13337 1.21603 1.01290 0.94721 1.02180 1.21542 1.01026 1.00004 0.96854 0.76132 0.62480 0.52587 0.63916 1.27106 1.06863 1.09874 1.18188 1.27105 1.25235 1.05030 1.04647 1.85321 1.79696 1.46661 1.48238 1.22022 0.99246 0.91055 0.87427 1.21481 1.02973 0.93652 0.97680 1.23014 0.99789 0.79535 1.00360 1.86084 1.71107 1.23001 1.42958 1.18717 0.94443 0.90262 0.87734 1.20720 1.02560 0.91545 1.00398 1.20170 0.97482 0.96863 0.93244 1.25039 0.94944 0.84818 1.13855 1.86521 1.40146 1.56759 1.52021 0.85294 0.78965 0.79811 0.75957 1.19586 1.17940 1.17437 1.20778 0.96506 0.93700 0.99179 1.19772 1.02572 0.96917 0.95673 1.18302 0.78689 0.74880 0.82523 1.93167 1.92444 1.35116 1.95112 1.93233 1.78237 1.95580 1.48939 1.93233 1.51738 1.74344 1.96648 1.21238 1.01167 1.01714 0.93923 0.92075 0.93446 0.92538 0.91787 0.93245 0.91792 0.92538 0.93440 0.92072 0.90801 0.90450 0.91203 0.91196 0.90445 0.90797 0.90755 0.90729 0.90251 0.90284 0.89853 0.89830 0.83758 0.84586 0.75929 0.83576 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 7.85 71.98 0.56 0.57 16 2 C -0.39 0.46 0.53 -10.79 -0.01 0.46 16 3 C -0.14 0.27 7.85 71.98 0.56 0.83 16 4 C -0.14 0.01 7.85 71.98 0.56 0.57 16 5 Si 1.32 -5.08 8.45 68.60 0.58 -4.50 16 6 C -0.52 1.81 8.50 113.37 0.96 2.77 16 7 C -0.52 1.83 8.50 113.37 0.96 2.79 16 8 O -0.64 0.98 8.56 -148.98 -1.28 -0.30 16 9 C 0.08 -0.41 5.12 71.98 0.37 -0.04 16 10 C -0.12 0.48 5.95 30.60 0.18 0.66 16 11 C 0.05 -0.24 4.74 71.98 0.34 0.10 16 12 O -0.32 -0.05 10.14 -92.42 -0.94 -0.98 16 13 C 0.13 0.02 6.69 22.51 0.15 0.17 16 14 C -0.13 0.08 8.61 22.37 0.19 0.28 16 15 C -0.08 0.12 5.39 -19.88 -0.11 0.02 16 16 C -0.08 0.29 2.82 71.24 0.20 0.49 16 17 O -0.55 1.28 12.77 -148.98 -1.90 -0.63 16 18 Si 0.98 -3.00 25.07 68.60 1.72 -1.28 16 19 H -0.27 -0.13 7.11 99.48 0.71 0.58 16 20 H -0.26 0.45 7.11 99.48 0.71 1.16 16 21 H -0.25 0.68 7.11 99.48 0.71 1.39 16 22 C -0.08 0.02 9.16 22.28 0.20 0.22 16 23 C -0.15 -0.11 5.37 -19.88 -0.11 -0.22 16 24 C 0.51 1.20 3.32 71.23 0.24 1.44 16 25 F -0.18 -0.37 15.97 44.97 0.72 0.35 16 26 F -0.18 -0.72 17.23 44.97 0.77 0.05 16 27 F -0.18 -0.74 17.24 44.97 0.78 0.04 16 28 C -0.16 0.13 8.42 22.37 0.19 0.32 16 29 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 30 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.06 0.03 7.97 -2.39 -0.02 0.01 16 32 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 33 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16 34 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 35 H 0.06 0.03 7.96 -2.39 -0.02 0.01 16 36 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 37 H 0.06 -0.10 7.79 -2.39 -0.02 -0.11 16 38 H 0.07 -0.36 7.48 -2.39 -0.02 -0.37 16 39 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 40 H 0.07 -0.18 7.79 -2.39 -0.02 -0.19 16 41 H 0.07 -0.18 7.79 -2.38 -0.02 -0.20 16 42 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 43 H 0.07 -0.36 7.48 -2.39 -0.02 -0.38 16 44 H 0.07 -0.63 7.21 -2.39 -0.02 -0.65 16 45 H 0.07 -0.63 7.21 -2.39 -0.02 -0.65 16 46 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.08 -0.65 7.66 -2.39 -0.02 -0.67 16 49 H 0.08 -0.66 7.66 -2.39 -0.02 -0.68 16 50 H 0.15 -0.33 4.88 -2.91 -0.01 -0.35 16 51 H 0.14 -0.81 7.96 -2.39 -0.02 -0.83 16 52 H 0.39 -3.35 8.70 -74.05 -0.64 -4.00 16 53 H 0.15 -0.19 8.06 -2.91 -0.02 -0.21 16 54 H 0.16 -0.70 5.40 -2.91 -0.02 -0.72 16 Total: 0.00 -11.23 442.08 6.93 -4.30 By element: Atomic # 1 Polarization: -9.50 SS G_CDS: 1.01 Total: -8.48 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 5.47 Total: 11.43 kcal Atomic # 8 Polarization: 2.21 SS G_CDS: -4.11 Total: -1.91 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 2.27 Total: 0.44 kcal Atomic # 14 Polarization: -8.08 SS G_CDS: 2.30 Total: -5.78 kcal Total: -11.23 6.93 -4.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10339940_18527726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -290.373 kcal (2) G-P(sol) polarization free energy of solvation -11.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -294.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds