Wall clock time and date at job start Mon Mar 8 2021 07:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86301 * 109.47025 * 2 1 4 4 C 1.86301 * 109.47181 * 240.00255 * 2 1 3 5 5 C 1.86795 * 109.47192 * 120.00181 * 2 1 3 6 6 C 1.38234 * 120.00205 * 89.99958 * 5 2 1 7 7 C 1.38234 * 120.00240 * 180.02562 * 6 5 2 8 8 C 1.38233 * 120.00037 * 0.26327 * 7 6 5 9 9 C 1.50693 * 120.00207 * 179.72405 * 8 7 6 10 10 O 1.42906 * 109.47463 * 89.99418 * 9 8 7 11 11 C 1.35894 * 117.00187 * 180.02562 * 10 9 8 12 12 C 1.38706 * 120.05451 * 180.02562 * 11 10 9 13 13 C 1.38170 * 119.94522 * 179.97438 * 12 11 10 14 14 C 1.50696 * 119.97567 * 180.02562 * 13 12 11 15 15 O 1.42896 * 109.47454 * 120.00161 * 14 13 12 16 16 Si 1.86306 * 109.46857 * 359.97438 * 14 13 12 17 17 H 1.48495 * 109.46841 * 60.00351 * 16 14 13 18 18 H 1.48510 * 109.46827 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47250 * 299.99876 * 16 14 13 20 20 C 1.38243 * 120.05549 * 359.97438 * 13 12 11 21 21 C 1.38292 * 120.11052 * 0.02562 * 20 13 12 22 22 C 1.50698 * 119.97057 * 179.97438 * 21 20 13 23 23 F 1.39895 * 109.47086 * 90.00237 * 22 21 20 24 24 F 1.39907 * 109.46852 * 210.00080 * 22 21 20 25 25 F 1.39894 * 109.47522 * 329.99815 * 22 21 20 26 26 C 1.38127 * 120.05546 * 359.68259 * 21 20 13 27 27 C 1.38238 * 119.99752 * 359.47832 * 8 7 6 28 28 C 1.38234 * 120.00005 * 0.52168 * 27 8 7 29 29 H 1.08999 * 109.47282 * 299.99957 * 1 2 3 30 30 H 1.08997 * 109.47709 * 59.99667 * 1 2 3 31 31 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47270 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47416 * 300.00195 * 3 2 1 34 34 H 1.09006 * 109.46995 * 60.00292 * 3 2 1 35 35 H 1.09002 * 109.46976 * 300.00577 * 4 2 1 36 36 H 1.09005 * 109.47230 * 59.99829 * 4 2 1 37 37 H 1.08998 * 109.47233 * 179.97438 * 4 2 1 38 38 H 1.07999 * 119.99751 * 359.97438 * 6 5 2 39 39 H 1.08002 * 119.99744 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.47097 * 209.99342 * 9 8 7 41 41 H 1.09001 * 109.47081 * 329.99847 * 9 8 7 42 42 H 1.08003 * 120.02931 * 359.97438 * 12 11 10 43 43 H 1.09003 * 109.47127 * 240.00206 * 14 13 12 44 44 H 0.96696 * 113.99916 * 300.00213 * 15 14 13 45 45 H 1.08001 * 119.94597 * 179.97438 * 20 13 12 46 46 H 1.07995 * 120.03248 * 180.31898 * 26 21 20 47 47 H 1.07999 * 119.99927 * 180.24100 * 27 8 7 48 48 H 1.08001 * 120.00310 * 179.72165 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1763 -2.8950 2.6197 8 6 3.4011 -2.1851 3.7844 9 6 3.8969 -2.8966 5.0167 10 8 5.3259 -2.8972 5.0240 11 6 5.9373 -3.5042 6.0749 12 6 7.3221 -3.5413 6.1462 13 6 7.9414 -4.1586 7.2160 14 6 9.4457 -4.1988 7.2944 15 8 9.8786 -3.5389 8.4856 16 14 10.1682 -3.3372 5.8088 17 1 9.7114 -1.9245 5.7854 18 1 11.6507 -3.3763 5.8864 19 1 9.7185 -4.0236 4.5712 20 6 7.1821 -4.7384 8.2152 21 6 5.8013 -4.7027 8.1465 22 6 4.9767 -5.3363 9.2372 23 9 4.7181 -4.3907 10.2352 24 9 3.7671 -5.7922 8.7021 25 9 5.6791 -6.4141 9.7866 26 6 5.1774 -4.0816 7.0821 27 6 3.1758 -0.8216 3.8171 28 6 2.7155 -0.1698 2.6883 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.5739 1.7565 -0.0005 33 1 2.1206 2.2703 -0.8899 34 1 2.1206 2.2703 0.8901 35 1 2.1206 -1.9058 -1.5212 36 1 2.1206 -0.3643 -2.4112 37 1 3.5740 -0.8778 -1.5214 38 1 2.5356 -2.7987 0.5825 39 1 3.3559 -3.9596 2.5930 40 1 3.5293 -2.3833 5.9053 41 1 3.5332 -3.9242 5.0141 42 1 7.9158 -3.0881 5.3660 43 1 9.7811 -5.2358 7.3112 44 1 9.6148 -2.6101 8.5387 45 1 7.6680 -5.2208 9.0504 46 1 4.0991 -4.0495 7.0315 47 1 3.3550 -0.2663 4.7259 48 1 2.5351 0.8947 2.7151 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10339940_9403676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:59:01 Heat of formation + Delta-G solvation = -204.306638 kcal Electronic energy + Delta-G solvation = -32369.599429 eV Core-core repulsion = 27484.490198 eV Total energy + Delta-G solvation = -4885.109231 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 384.128 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -51.29521 -48.81048 -48.76326 -41.69600 -40.20511 -39.08821 -37.46127 -33.78147 -33.12230 -31.89887 -31.32953 -29.44976 -28.30365 -28.27963 -27.91868 -27.33773 -26.59210 -23.50636 -23.43890 -22.84763 -21.86117 -19.98962 -19.62253 -19.57588 -18.27981 -18.05517 -17.70048 -17.41434 -17.19526 -16.77141 -16.22982 -15.92765 -15.87760 -15.67881 -15.57991 -15.51955 -15.19766 -14.97744 -14.93707 -14.91276 -14.59471 -14.35413 -14.08707 -14.06155 -13.91796 -13.81309 -13.78142 -13.66786 -13.50351 -13.28466 -13.15134 -13.12322 -12.97615 -12.85556 -12.46941 -12.34086 -12.25574 -12.09899 -11.86789 -11.81530 -10.93619 -10.79217 -10.76757 -10.63203 -10.33244 -9.82366 -9.71646 -9.55695 -0.40248 0.00712 0.12254 0.50541 1.10102 1.43962 1.48473 1.50472 1.82041 1.88855 1.91240 2.01454 2.15157 2.20168 2.53778 2.65685 2.85518 2.97952 3.26351 3.35912 3.54396 3.61685 3.70908 3.76628 3.86712 3.94251 4.02441 4.11191 4.20576 4.26611 4.34025 4.51787 4.59002 4.69500 4.79907 4.83831 4.83890 4.87764 4.88485 4.88885 4.89033 4.89848 4.98116 5.03339 5.14373 5.27364 5.37970 5.54702 5.57754 5.58496 5.67159 5.69859 6.07881 6.10930 6.65234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.127 2.873 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.372 4.372 6 C -0.104 4.104 7 C -0.121 4.121 8 C -0.105 4.105 9 C 0.095 3.905 10 O -0.314 6.314 11 C 0.133 3.867 12 C -0.133 4.133 13 C -0.076 4.076 14 C -0.075 4.075 15 O -0.546 6.546 16 Si 0.974 3.026 17 H -0.252 1.252 18 H -0.268 1.268 19 H -0.257 1.257 20 C -0.083 4.083 21 C -0.147 4.147 22 C 0.510 3.490 23 F -0.179 7.179 24 F -0.179 7.179 25 F -0.176 7.176 26 C -0.160 4.160 27 C -0.120 4.120 28 C -0.104 4.104 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.391 0.609 45 H 0.150 0.850 46 H 0.154 0.846 47 H 0.129 0.871 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 2.284 -3.681 4.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.314 2.686 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.411 4.411 6 C -0.122 4.122 7 C -0.139 4.139 8 C -0.105 4.105 9 C 0.021 3.979 10 O -0.228 6.228 11 C 0.087 3.913 12 C -0.151 4.151 13 C -0.076 4.076 14 C -0.185 4.185 15 O -0.353 6.353 16 Si 0.798 3.202 17 H -0.176 1.176 18 H -0.193 1.193 19 H -0.181 1.181 20 C -0.101 4.101 21 C -0.148 4.148 22 C 0.456 3.544 23 F -0.160 7.160 24 F -0.160 7.160 25 F -0.158 7.158 26 C -0.179 4.179 27 C -0.138 4.138 28 C -0.122 4.122 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.157 0.843 39 H 0.147 0.853 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.241 0.759 45 H 0.168 0.832 46 H 0.172 0.828 47 H 0.147 0.853 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.241 2.165 -4.343 4.859 hybrid contribution -0.819 -0.111 0.872 1.202 sum -1.059 2.055 -3.471 4.170 Atomic orbital electron populations 1.26281 1.21517 1.04487 1.04596 0.77172 0.65217 0.64602 0.61629 1.26284 1.06374 1.19428 1.04891 1.26287 1.06373 1.08516 1.15817 1.28048 1.02299 0.99628 1.11165 1.21396 0.97340 0.95203 0.98244 1.21393 0.99066 1.00552 0.92865 1.19584 1.01701 0.94515 0.94715 1.21864 0.77396 1.01488 0.97187 1.86193 1.22426 1.72628 1.41582 1.18736 0.92030 0.93293 0.87206 1.20709 0.92151 1.02272 0.99992 1.20186 0.97341 0.96773 0.93339 1.25022 0.90153 1.04989 0.98378 1.86518 1.78870 1.29862 1.40085 0.85316 0.79257 0.79856 0.75743 1.17605 1.19285 1.18081 1.20840 0.90912 0.98578 0.99790 1.19770 0.94837 1.04365 0.95847 1.18297 0.78070 0.76388 0.81626 1.93236 1.94365 1.64755 1.63645 1.93199 1.47305 1.89519 1.85963 1.93207 1.78571 1.56998 1.86989 1.21134 1.01629 1.00993 0.94143 1.21392 0.99055 0.93711 0.99691 1.21398 0.97333 1.00791 0.92653 0.91368 0.90675 0.91376 0.91369 0.90658 0.90883 0.90897 0.90658 0.91373 0.84289 0.85333 0.89620 0.89641 0.83882 0.84444 0.75931 0.83209 0.82837 0.85300 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.94 8.65 113.37 0.98 2.92 16 2 Si 1.13 -7.03 12.32 68.60 0.85 -6.19 16 3 C -0.46 2.18 8.53 113.37 0.97 3.15 16 4 C -0.46 2.16 8.53 113.37 0.97 3.13 16 5 C -0.37 0.49 4.59 22.27 0.10 0.59 16 6 C -0.10 0.02 9.29 22.27 0.21 0.22 16 7 C -0.12 -0.17 9.70 22.27 0.22 0.04 16 8 C -0.11 -0.20 5.51 -19.87 -0.11 -0.31 16 9 C 0.09 -0.04 4.86 71.23 0.35 0.31 16 10 O -0.31 -1.01 10.12 -92.35 -0.93 -1.94 16 11 C 0.13 0.27 6.69 22.51 0.15 0.42 16 12 C -0.13 -0.10 8.61 22.37 0.19 0.09 16 13 C -0.08 0.06 5.39 -19.88 -0.11 -0.05 16 14 C -0.07 0.24 2.82 71.23 0.20 0.44 16 15 O -0.55 1.06 12.77 -148.98 -1.90 -0.84 16 16 Si 0.97 -2.29 25.07 68.60 1.72 -0.57 16 17 H -0.25 0.44 7.11 99.48 0.71 1.15 16 18 H -0.27 -0.22 7.11 99.48 0.71 0.49 16 19 H -0.26 0.21 7.11 99.48 0.71 0.92 16 20 C -0.08 -0.05 8.96 22.28 0.20 0.15 16 21 C -0.15 -0.29 5.45 -19.88 -0.11 -0.40 16 22 C 0.51 1.80 3.36 71.24 0.24 2.04 16 23 F -0.18 -0.91 17.30 44.97 0.78 -0.13 16 24 F -0.18 -0.74 16.47 44.97 0.74 0.01 16 25 F -0.18 -0.81 16.46 44.97 0.74 -0.07 16 26 C -0.16 -0.16 8.39 22.37 0.19 0.03 16 27 C -0.12 -0.16 9.70 22.27 0.22 0.06 16 28 C -0.10 0.02 9.29 22.27 0.21 0.23 16 29 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 30 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 31 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 32 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 33 H 0.07 -0.38 7.96 -2.39 -0.02 -0.39 16 34 H 0.07 -0.38 7.69 -2.38 -0.02 -0.39 16 35 H 0.07 -0.37 7.69 -2.39 -0.02 -0.39 16 36 H 0.07 -0.37 7.96 -2.38 -0.02 -0.39 16 37 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 38 H 0.14 -0.59 7.43 -2.91 -0.02 -0.61 16 39 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 40 H 0.09 -0.26 7.59 -2.39 -0.02 -0.28 16 41 H 0.09 -0.25 7.62 -2.39 -0.02 -0.26 16 42 H 0.14 -0.11 4.88 -2.91 -0.01 -0.12 16 43 H 0.14 -0.76 7.96 -2.39 -0.02 -0.78 16 44 H 0.39 -3.18 8.70 -74.06 -0.64 -3.82 16 45 H 0.15 -0.09 7.60 -2.91 -0.02 -0.11 16 46 H 0.15 -0.28 5.85 -2.91 -0.02 -0.30 16 47 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 48 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 Total: 0.00 -12.58 412.45 8.15 -4.43 By element: Atomic # 1 Polarization: -8.85 SS G_CDS: 1.11 Total: -7.74 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 5.06 Total: 13.05 kcal Atomic # 8 Polarization: 0.05 SS G_CDS: -2.84 Total: -2.78 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 2.26 Total: -0.20 kcal Atomic # 14 Polarization: -9.33 SS G_CDS: 2.57 Total: -6.76 kcal Total: -12.58 8.15 -4.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10339940_9403676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.873 kcal (2) G-P(sol) polarization free energy of solvation -12.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds