Wall clock time and date at job start Mon Mar 8 2021 08:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.53004 * 109.47215 * 240.00405 * 2 1 3 5 5 Si 1.86295 * 109.47179 * 120.00097 * 2 1 3 6 6 C 1.86297 * 109.47300 * 300.00081 * 5 2 1 7 7 C 1.86302 * 109.47237 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.46953 * 60.00083 * 5 2 1 9 9 C 1.42907 * 114.00047 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.47325 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.46429 * 65.00746 * 10 9 8 12 12 C 1.42899 * 113.99649 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47405 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46726 * 64.99720 * 13 12 11 15 15 C 1.35928 * 116.99512 * 179.97438 * 14 13 12 16 16 C 1.38663 * 120.06203 * 0.02562 * 15 14 13 17 17 C 1.38197 * 119.95413 * 180.02562 * 16 15 14 18 18 C 1.38228 * 120.07898 * 359.97202 * 17 16 15 19 19 C 1.38287 * 120.11976 * 0.02979 * 18 17 16 20 20 C 1.50703 * 119.97983 * 179.97438 * 19 18 17 21 21 O 1.42901 * 109.47140 * 254.99749 * 20 19 18 22 22 Si 1.86300 * 109.47000 * 14.99428 * 20 19 18 23 23 H 1.48497 * 109.47289 * 60.00414 * 22 20 19 24 24 H 1.48504 * 109.47264 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47017 * 300.00133 * 22 20 19 26 26 C 1.38219 * 120.04422 * 359.71354 * 19 18 17 27 27 Cl 1.73597 * 120.04073 * 180.29965 * 26 19 18 28 28 H 1.08999 * 109.47148 * 299.99729 * 1 2 3 29 29 H 1.09002 * 109.46857 * 60.00007 * 1 2 3 30 30 H 1.08997 * 109.46473 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47060 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47294 * 300.00259 * 3 2 1 33 33 H 1.09007 * 109.46816 * 59.99822 * 3 2 1 34 34 H 1.08998 * 109.46969 * 299.99762 * 4 2 1 35 35 H 1.09003 * 109.47109 * 59.99703 * 4 2 1 36 36 H 1.09005 * 109.46879 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47546 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47531 * 300.00429 * 6 5 2 39 39 H 1.09001 * 109.47051 * 59.99769 * 6 5 2 40 40 H 1.08999 * 109.46826 * 300.00012 * 7 5 2 41 41 H 1.08998 * 109.47222 * 59.99880 * 7 5 2 42 42 H 1.08994 * 109.47395 * 180.02562 * 7 5 2 43 43 H 1.09005 * 109.46610 * 60.00621 * 9 8 5 44 44 H 1.08995 * 109.47386 * 300.00783 * 9 8 5 45 45 H 1.08990 * 109.47090 * 305.00772 * 10 9 8 46 46 H 1.08992 * 109.46809 * 185.00065 * 10 9 8 47 47 H 1.09002 * 109.47445 * 59.99875 * 12 11 10 48 48 H 1.09002 * 109.47167 * 299.99793 * 12 11 10 49 49 H 1.09002 * 109.47398 * 184.99964 * 13 12 11 50 50 H 1.09001 * 109.47194 * 305.00145 * 13 12 11 51 51 H 1.07990 * 120.02094 * 0.02562 * 16 15 14 52 52 H 1.08005 * 119.95875 * 180.02562 * 17 16 15 53 53 H 1.08002 * 119.94154 * 180.02562 * 18 17 16 54 54 H 1.09001 * 109.47509 * 134.99697 * 20 19 18 55 55 H 0.96706 * 114.00008 * 59.99571 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8776 1.5215 8 8 1.6074 -2.4159 1.5210 9 6 2.0295 -3.1817 2.6513 10 6 1.4636 -4.5994 2.5470 11 8 2.0313 -5.2564 1.4120 12 6 1.5663 -6.5942 1.2221 13 6 2.2359 -7.1963 -0.0148 14 8 3.6416 -7.3135 0.2142 15 6 4.3896 -7.8350 -0.7939 16 6 3.7835 -8.2251 -1.9784 17 6 4.5460 -8.7555 -3.0017 18 6 5.9122 -8.8971 -2.8458 19 6 6.5199 -8.5091 -1.6658 20 6 8.0095 -8.6654 -1.4991 21 8 8.2789 -9.7751 -0.6400 22 14 8.7927 -8.9638 -3.1630 23 1 8.5129 -7.8106 -4.0558 24 1 10.2605 -9.1184 -2.9987 25 1 8.2289 -10.2008 -3.7607 26 6 5.7629 -7.9731 -0.6412 27 17 6.5270 -7.4789 0.8372 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1301 -0.7207 -1.2495 37 1 1.8930 -0.5142 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1502 1.5217 42 1 4.3774 -1.3918 2.4112 43 1 1.6653 -2.7119 3.5649 44 1 3.1184 -3.2255 2.6744 45 1 0.3806 -4.5509 2.4347 46 1 1.7108 -5.1566 3.4505 47 1 0.4853 -6.5868 1.0822 48 1 1.8151 -7.1931 2.0982 49 1 1.8163 -8.1829 -0.2113 50 1 2.0606 -6.5491 -0.8742 51 1 2.7163 -8.1145 -2.1012 52 1 4.0741 -9.0590 -3.9245 53 1 6.5061 -9.3115 -3.6471 54 1 8.4234 -7.7574 -1.0604 55 1 7.9384 -10.6185 -0.9685 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10544594_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:52:09 Heat of formation + Delta-G solvation = -190.183756 kcal Electronic energy + Delta-G solvation = -32569.431626 eV Core-core repulsion = 28142.424264 eV Total energy + Delta-G solvation = -4427.007362 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 390.163 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.38977 -39.58811 -38.89585 -37.50946 -37.34284 -37.14973 -36.83030 -32.46083 -32.37547 -30.77293 -29.62650 -29.17948 -29.07058 -27.84303 -27.38949 -26.98670 -24.22194 -23.79087 -23.46272 -22.04311 -20.42119 -19.38310 -18.22725 -18.13848 -17.94220 -17.60426 -17.20638 -16.72445 -16.36126 -16.22146 -16.08453 -15.74966 -15.60188 -15.40563 -15.30644 -14.85597 -14.81456 -14.64020 -14.57375 -14.23324 -13.99343 -13.89731 -13.55391 -13.40662 -13.33499 -13.20042 -13.09155 -12.96166 -12.93359 -12.84545 -12.60684 -12.53347 -12.41354 -12.30617 -12.21905 -12.10831 -11.90225 -11.78519 -11.72041 -11.68370 -11.52451 -11.49008 -11.19930 -10.56402 -10.44812 -10.31183 -10.05522 -9.90326 -9.26474 -0.00258 0.19908 1.12239 1.21598 1.44774 1.53392 1.55466 1.79544 1.90094 2.10115 2.12559 2.48003 2.48928 2.69173 3.43549 3.63864 3.76229 3.96790 3.99885 4.03713 4.10777 4.11592 4.12180 4.14641 4.22424 4.32126 4.33670 4.41911 4.44041 4.48515 4.51625 4.58578 4.66814 4.70036 4.72789 4.73597 4.77533 4.78533 4.81141 4.82695 4.83142 4.99255 4.99305 5.08434 5.09040 5.12932 5.19624 5.29472 5.32943 5.40212 5.43293 5.51967 5.55941 5.57733 5.62960 6.21409 6.31449 6.71303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.380 4.380 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.311 2.689 6 C -0.513 4.513 7 C -0.521 4.521 8 O -0.634 6.634 9 C 0.075 3.925 10 C 0.054 3.946 11 O -0.399 6.399 12 C 0.058 3.942 13 C 0.053 3.947 14 O -0.316 6.316 15 C 0.127 3.873 16 C -0.197 4.197 17 C -0.063 4.063 18 C -0.161 4.161 19 C -0.081 4.081 20 C -0.093 4.093 21 O -0.544 6.544 22 Si 0.996 3.004 23 H -0.255 1.255 24 H -0.274 1.274 25 H -0.232 1.232 26 C -0.073 4.073 27 Cl -0.065 7.065 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.104 0.896 50 H 0.076 0.924 51 H 0.161 0.839 52 H 0.166 0.834 53 H 0.152 0.848 54 H 0.109 0.891 55 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.595 -1.970 -1.772 5.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.441 2.559 6 C -0.615 4.615 7 C -0.621 4.621 8 O -0.594 6.594 9 C 0.000 4.000 10 C -0.022 4.022 11 O -0.319 6.319 12 C -0.018 4.018 13 C -0.021 4.021 14 O -0.229 6.229 15 C 0.080 3.920 16 C -0.216 4.216 17 C -0.081 4.081 18 C -0.179 4.179 19 C -0.082 4.082 20 C -0.202 4.202 21 O -0.351 6.351 22 Si 0.818 3.182 23 H -0.179 1.179 24 H -0.200 1.200 25 H -0.155 1.155 26 C -0.100 4.100 27 Cl -0.037 7.037 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.114 0.886 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.095 0.905 51 H 0.178 0.822 52 H 0.183 0.817 53 H 0.169 0.831 54 H 0.127 0.873 55 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.844 -1.636 -2.148 4.698 hybrid contribution -0.340 0.250 0.578 0.716 sum -4.185 -1.386 -1.570 4.680 Atomic orbital electron populations 1.21523 0.93928 1.01763 1.01973 1.25869 1.00634 1.02930 1.12851 1.21602 1.01107 0.94671 1.02370 1.21514 1.00679 0.99935 0.97092 0.76290 0.61937 0.53063 0.64606 1.27029 1.07061 1.09750 1.17699 1.27175 1.26331 1.04619 1.04014 1.85380 1.79156 1.46473 1.48349 1.22291 0.99155 0.90822 0.87746 1.22812 0.98463 0.92015 0.88891 1.87996 1.68596 1.26788 1.48550 1.22687 0.98528 0.83370 0.97197 1.23193 0.77655 1.01968 0.99268 1.86212 1.21257 1.77402 1.38047 1.18953 0.89571 0.94472 0.89009 1.21592 1.02316 1.04962 0.92681 1.21396 0.93040 0.94511 0.99177 1.21271 0.96303 1.03442 0.96853 1.20235 0.96948 0.98156 0.92898 1.25276 0.92789 0.93731 1.08366 1.86549 1.80766 1.18283 1.49520 0.85054 0.78428 0.81811 0.72937 1.17934 1.19958 1.15509 1.20285 0.90462 1.08503 0.90775 1.98363 1.81244 1.90087 1.33957 0.91837 0.93242 0.92591 0.92163 0.92975 0.91565 0.92833 0.93112 0.92707 0.90886 0.90336 0.90722 0.92016 0.90417 0.91487 0.88847 0.92261 0.91354 0.90567 0.88647 0.91941 0.87779 0.90546 0.82176 0.81653 0.83116 0.87345 0.76223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.15 7.85 71.98 0.56 0.42 16 2 C -0.38 -0.43 0.53 -10.79 -0.01 -0.44 16 3 C -0.14 0.00 7.85 71.98 0.56 0.57 16 4 C -0.14 -0.41 7.85 71.98 0.56 0.16 16 5 Si 1.31 -0.28 8.45 68.60 0.58 0.30 16 6 C -0.51 0.81 8.50 113.37 0.96 1.77 16 7 C -0.52 -1.09 8.50 113.37 0.96 -0.13 16 8 O -0.63 -1.90 8.52 -144.35 -1.23 -3.13 16 9 C 0.08 0.02 5.50 71.98 0.40 0.41 16 10 C 0.05 0.00 6.32 71.98 0.45 0.45 16 11 O -0.40 -2.02 10.27 -135.05 -1.39 -3.41 16 12 C 0.06 -0.06 6.32 71.98 0.45 0.40 16 13 C 0.05 -0.05 5.12 71.98 0.37 0.32 16 14 O -0.32 -2.08 9.56 -88.10 -0.84 -2.92 16 15 C 0.13 0.72 6.68 22.52 0.15 0.87 16 16 C -0.20 0.07 9.04 22.36 0.20 0.28 16 17 C -0.06 0.17 10.04 22.26 0.22 0.40 16 18 C -0.16 0.13 8.66 22.28 0.19 0.33 16 19 C -0.08 -0.28 5.26 -19.86 -0.10 -0.39 16 20 C -0.09 -0.21 2.09 71.24 0.15 -0.06 16 21 O -0.54 -1.68 12.84 -148.98 -1.91 -3.60 16 22 Si 1.00 -1.23 25.49 68.60 1.75 0.52 16 23 H -0.26 0.01 7.11 99.48 0.71 0.72 16 24 H -0.27 -0.69 7.11 99.48 0.71 0.02 16 25 H -0.23 0.98 6.73 99.48 0.67 1.65 16 26 C -0.07 -0.56 6.33 22.41 0.14 -0.42 16 27 Cl -0.07 -0.69 27.14 -2.72 -0.07 -0.76 16 28 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 29 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 0.10 7.97 -2.39 -0.02 0.08 16 31 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 32 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 -0.14 7.79 -2.38 -0.02 -0.15 16 34 H 0.05 0.23 7.96 -2.39 -0.02 0.21 16 35 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.05 0.14 7.79 -2.38 -0.02 0.13 16 37 H 0.07 -0.20 7.48 -2.39 -0.02 -0.21 16 38 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 39 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 40 H 0.06 0.27 7.79 -2.39 -0.02 0.25 16 41 H 0.08 0.05 7.79 -2.39 -0.02 0.04 16 42 H 0.07 0.12 7.48 -2.39 -0.02 0.10 16 43 H 0.09 -0.49 7.21 -2.38 -0.02 -0.51 16 44 H 0.06 0.05 7.21 -2.39 -0.02 0.03 16 45 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 48 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 49 H 0.10 -0.68 7.66 -2.39 -0.02 -0.69 16 50 H 0.08 -0.11 7.66 -2.39 -0.02 -0.13 16 51 H 0.16 -0.91 6.30 -2.92 -0.02 -0.93 16 52 H 0.17 -1.50 8.06 -2.91 -0.02 -1.52 16 53 H 0.15 -0.77 4.88 -2.91 -0.01 -0.78 16 54 H 0.11 0.42 7.39 -2.39 -0.02 0.40 16 55 H 0.39 -1.76 8.70 -74.05 -0.64 -2.41 16 Total: 0.00 -17.27 450.95 4.06 -13.21 By element: Atomic # 1 Polarization: -6.07 SS G_CDS: 0.94 Total: -5.14 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.25 Total: 4.93 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -5.37 Total: -13.06 kcal Atomic # 14 Polarization: -1.51 SS G_CDS: 2.33 Total: 0.82 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.07 Total: -0.76 kcal Total: -17.27 4.06 -13.21 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10544594_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.974 kcal (2) G-P(sol) polarization free energy of solvation -17.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds