Wall clock time and date at job start Mon Mar 8 2021 09:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 113.99963 * 2 1 4 4 C 1.53002 * 112.84910 * 65.90319 * 3 2 1 5 5 F 1.39897 * 109.46941 * 283.57976 * 4 3 2 6 6 F 1.39894 * 109.47348 * 43.58171 * 4 3 2 7 7 F 1.39907 * 109.47076 * 163.58106 * 4 3 2 8 8 C 1.53780 * 113.61749 * 294.70333 * 3 2 1 9 9 C 1.53785 * 87.08096 * 270.88441 * 8 3 2 10 10 H 1.09003 * 113.61338 * 220.01555 * 9 8 3 11 11 C 1.52998 * 113.61370 * 89.19841 * 9 8 3 12 12 O 1.42897 * 109.47066 * 176.52664 * 11 9 8 13 13 C 1.35932 * 117.00212 * 179.97438 * 12 11 9 14 14 C 1.38814 * 120.06294 * 179.72677 * 13 12 11 15 15 Cl 1.73596 * 120.03612 * 359.97438 * 14 13 12 16 16 C 1.38255 * 119.92191 * 179.70011 * 14 13 12 17 17 C 1.50701 * 119.97836 * 180.29902 * 16 14 13 18 18 O 1.42895 * 109.47087 * 285.29980 * 17 16 14 19 19 Si 1.86299 * 109.47202 * 165.30024 * 17 16 14 20 20 C 1.38248 * 120.04200 * 0.59506 * 16 14 13 21 21 C 1.38282 * 120.12012 * 359.68251 * 20 16 14 22 22 C 1.38150 * 120.07550 * 0.02562 * 21 20 16 23 23 C 1.53775 * 87.17389 * 334.60938 * 9 8 3 24 24 H 1.09000 * 109.47258 * 296.83471 * 1 2 3 25 25 H 1.09001 * 109.47387 * 56.83483 * 1 2 3 26 26 H 1.08998 * 109.47248 * 176.83375 * 1 2 3 27 27 H 1.08993 * 113.61729 * 156.33861 * 8 3 2 28 28 H 1.09002 * 113.69080 * 25.44008 * 8 3 2 29 29 H 1.08997 * 109.47390 * 296.52985 * 11 9 8 30 30 H 1.09004 * 109.47149 * 56.52696 * 11 9 8 31 31 H 1.08998 * 109.46681 * 45.29979 * 17 16 14 32 32 H 0.96705 * 113.99982 * 299.99853 * 18 17 16 33 33 H 1.48492 * 110.00084 * 180.02562 * 19 17 16 34 34 H 1.48499 * 109.99923 * 301.32010 * 19 17 16 35 35 H 1.08002 * 119.93791 * 179.69422 * 20 16 14 36 36 H 1.07997 * 119.95777 * 180.02562 * 21 20 16 37 37 H 1.07995 * 120.02179 * 180.02562 * 22 21 20 38 38 H 1.08994 * 113.61935 * 139.94183 * 23 9 8 39 39 H 1.09002 * 113.61220 * 270.84594 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.7259 2.0823 1.2871 5 9 0.4091 2.5544 1.2657 6 9 1.9010 1.2388 2.3893 7 9 2.6077 3.1643 1.3831 8 6 1.7228 2.1078 -1.2800 9 6 2.9995 1.4812 -1.8653 10 1 3.5970 2.1771 -2.4542 11 6 2.7565 0.1520 -2.5829 12 8 3.9802 -0.3089 -3.1591 13 6 3.9381 -1.4862 -3.8373 14 6 5.0890 -1.9904 -4.4273 15 17 6.5843 -1.1176 -4.3006 16 6 5.0442 -3.1911 -5.1112 17 6 6.2944 -3.7429 -5.7465 18 8 6.5954 -3.0000 -6.9294 19 14 6.0283 -5.5331 -6.1884 20 6 3.8520 -3.8828 -5.2178 21 6 2.7032 -3.3794 -4.6356 22 6 2.7436 -2.1830 -3.9460 23 6 3.4920 1.3186 -0.4176 24 1 -0.3634 0.4639 0.9170 25 1 -0.3634 0.5622 -0.8602 26 1 -0.3634 -1.0261 -0.0568 27 1 1.7893 3.1870 -1.1431 28 1 0.8113 1.8016 -1.7935 29 1 2.3910 -0.5853 -1.8681 30 1 2.0153 0.2939 -3.3694 31 1 7.1247 -3.6614 -5.0450 32 1 5.8987 -3.0279 -7.5994 33 1 7.2542 -6.0892 -6.8152 34 1 5.6831 -6.3108 -4.9714 35 1 3.8179 -4.8182 -5.7566 36 1 1.7734 -3.9221 -4.7201 37 1 1.8460 -1.7908 -3.4913 38 1 4.0065 0.3754 -0.2347 39 1 4.0430 2.1819 -0.0444 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10544594_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:50 Heat of formation + Delta-G solvation = -200.464239 kcal Electronic energy + Delta-G solvation = -30003.466313 eV Core-core repulsion = 25104.926860 eV Total energy + Delta-G solvation = -4898.539453 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.073 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.27776 -48.81151 -48.75185 -41.78084 -40.99436 -39.13941 -37.41118 -37.34175 -36.92913 -32.41603 -31.66678 -30.14136 -28.18998 -27.55360 -26.77396 -26.64587 -23.76029 -23.54129 -22.30233 -20.60209 -19.86133 -19.57292 -19.26867 -19.15996 -17.95926 -17.50261 -17.31401 -17.16705 -16.90211 -16.47761 -16.19579 -15.83640 -15.67560 -15.60661 -15.50515 -15.33141 -15.19385 -15.05170 -14.93080 -14.87992 -14.47849 -14.26438 -14.10856 -14.07648 -13.42436 -13.19755 -13.12321 -12.93277 -12.67961 -12.52206 -12.44554 -12.19412 -12.04062 -11.89649 -11.80518 -11.67125 -11.52782 -10.82016 -10.46866 -9.88509 -9.24433 -5.00586 0.02038 0.23326 1.20822 1.26859 1.51246 1.67502 1.92197 2.03823 2.08632 2.51415 2.54428 2.60775 2.87270 3.29051 3.34726 3.42488 3.50764 3.64008 3.70563 3.93361 4.02175 4.11420 4.24593 4.25886 4.28564 4.33418 4.37919 4.44838 4.47833 4.49539 4.64562 4.69320 4.71156 4.79596 4.82186 5.00687 5.04187 5.18156 5.33569 5.60376 5.70716 6.25597 6.79251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.345 6.345 3 C 0.039 3.961 4 C 0.432 3.568 5 F -0.183 7.183 6 F -0.189 7.189 7 F -0.178 7.178 8 C -0.130 4.130 9 C -0.094 4.094 10 H 0.109 0.891 11 C 0.066 3.934 12 O -0.319 6.319 13 C 0.126 3.874 14 C -0.077 4.077 15 Cl -0.071 7.071 16 C -0.085 4.085 17 C -0.085 4.085 18 O -0.547 6.547 19 Si 0.798 3.202 20 C -0.141 4.141 21 C -0.063 4.063 22 C -0.195 4.195 23 C -0.116 4.116 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.395 0.605 33 H -0.299 1.299 34 H -0.283 1.283 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.958 -1.829 -4.220 9.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.263 6.263 3 C -0.004 4.004 4 C 0.377 3.623 5 F -0.164 7.164 6 F -0.170 7.170 7 F -0.159 7.159 8 C -0.167 4.167 9 C -0.113 4.113 10 H 0.127 0.873 11 C -0.008 4.008 12 O -0.232 6.232 13 C 0.080 3.920 14 C -0.104 4.104 15 Cl -0.042 7.042 16 C -0.086 4.086 17 C -0.193 4.193 18 O -0.355 6.355 19 Si 0.703 3.297 20 C -0.159 4.159 21 C -0.081 4.081 22 C -0.213 4.213 23 C -0.154 4.154 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.130 0.870 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.245 0.755 33 H -0.228 1.228 34 H -0.209 1.209 35 H 0.183 0.817 36 H 0.188 0.812 37 H 0.176 0.824 38 H 0.104 0.896 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.775 -2.441 -3.675 8.085 hybrid contribution 0.290 1.076 1.319 1.727 sum -6.485 -1.364 -2.357 7.034 Atomic orbital electron populations 1.23312 0.78574 1.05489 1.01836 1.88077 1.22200 1.22166 1.93823 1.24184 1.00219 0.86400 0.89580 1.21551 0.74163 0.78709 0.87865 1.93183 1.37036 1.89404 1.96827 1.93185 1.95041 1.71151 1.57660 1.93173 1.68980 1.57168 1.96611 1.23602 0.99757 1.01370 0.92008 1.22029 0.97984 0.96341 0.94909 0.87286 1.22941 0.84625 0.95722 0.97497 1.86098 1.36423 1.34556 1.66164 1.18877 0.93227 0.86849 0.93061 1.20318 0.86821 0.96554 1.06747 1.98365 1.32597 1.76070 1.97167 1.20268 0.97474 0.92977 0.97864 1.25411 0.95675 1.09064 0.89186 1.86534 1.47347 1.74626 1.27004 0.93778 0.83388 0.69956 0.82614 1.21199 0.91048 1.01074 1.02582 1.21462 0.99638 0.93934 0.93024 1.21599 0.96650 0.98045 1.05053 1.23341 0.90804 1.05362 0.95846 0.93974 0.90777 0.86635 0.86021 0.86954 0.89713 0.89559 0.88786 0.75537 1.22761 1.20928 0.81672 0.81204 0.82393 0.89566 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.33 113.37 1.17 1.15 16 2 O -0.34 0.43 8.34 -148.98 -1.24 -0.81 16 3 C 0.04 -0.07 0.85 -10.21 -0.01 -0.08 16 4 C 0.43 0.91 2.51 71.98 0.18 1.09 16 5 F -0.18 -0.38 15.38 44.97 0.69 0.31 16 6 F -0.19 -1.22 17.09 44.97 0.77 -0.45 16 7 F -0.18 -0.48 15.84 44.97 0.71 0.23 16 8 C -0.13 0.89 6.51 31.12 0.20 1.09 16 9 C -0.09 0.42 4.19 -10.27 -0.04 0.38 16 10 H 0.11 -0.51 8.14 -2.39 -0.02 -0.52 16 11 C 0.07 -0.23 4.34 71.98 0.31 0.09 16 12 O -0.32 -1.08 9.60 -92.78 -0.89 -1.97 16 13 C 0.13 0.40 6.68 22.52 0.15 0.55 16 14 C -0.08 -0.44 6.33 22.41 0.14 -0.30 16 15 Cl -0.07 -0.66 27.13 -2.72 -0.07 -0.74 16 16 C -0.08 -0.12 5.26 -19.86 -0.10 -0.22 16 17 C -0.08 -0.13 2.09 71.24 0.15 0.01 16 18 O -0.55 -1.11 12.81 -148.98 -1.91 -3.02 16 19 Si 0.80 -2.17 29.91 68.60 2.05 -0.12 16 20 C -0.14 0.63 8.66 22.28 0.19 0.82 16 21 C -0.06 0.38 10.04 22.26 0.22 0.60 16 22 C -0.19 0.56 9.04 22.36 0.20 0.76 16 23 C -0.12 0.22 6.91 31.18 0.22 0.43 16 24 H 0.04 -0.13 6.60 -2.39 -0.02 -0.14 16 25 H 0.07 -0.70 6.60 -2.39 -0.02 -0.72 16 26 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H 0.12 -1.00 8.06 -2.39 -0.02 -1.02 16 28 H 0.11 -1.15 6.65 -2.39 -0.02 -1.16 16 29 H 0.08 -0.28 5.61 -2.39 -0.01 -0.29 16 30 H 0.09 -0.62 7.66 -2.38 -0.02 -0.64 16 31 H 0.09 0.52 7.42 -2.39 -0.02 0.50 16 32 H 0.39 -2.81 8.70 -74.05 -0.64 -3.45 16 33 H -0.30 -1.53 7.11 99.48 0.71 -0.83 16 34 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 35 H 0.17 -1.78 5.12 -2.91 -0.01 -1.79 16 36 H 0.17 -2.15 8.06 -2.91 -0.02 -2.17 16 37 H 0.16 -1.21 6.30 -2.91 -0.02 -1.23 16 38 H 0.09 0.07 8.10 -2.39 -0.02 0.05 16 39 H 0.12 -0.37 7.02 -2.39 -0.02 -0.38 16 Total: 0.00 -18.44 342.23 3.62 -14.82 By element: Atomic # 1 Polarization: -15.16 SS G_CDS: 0.52 Total: -14.64 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 2.99 Total: 6.39 kcal Atomic # 8 Polarization: -1.76 SS G_CDS: -4.04 Total: -5.80 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 2.17 Total: 0.09 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.05 Total: -0.12 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.07 Total: -0.74 kcal Total: -18.44 3.62 -14.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10544594_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.646 kcal (2) G-P(sol) polarization free energy of solvation -18.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds