Wall clock time and date at job start Mon Mar 8 2021 09:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35928 * 116.99512 * 179.97438 * 12 11 10 14 14 C 1.38663 * 120.06203 * 0.02562 * 13 12 11 15 15 C 1.38197 * 119.95413 * 180.02562 * 14 13 12 16 16 C 1.38228 * 120.07898 * 359.97202 * 15 14 13 17 17 C 1.38287 * 120.11976 * 0.02979 * 16 15 14 18 18 C 1.50703 * 119.97983 * 179.97438 * 17 16 15 19 19 O 1.42901 * 109.47140 * 254.99749 * 18 17 16 20 20 Si 1.86300 * 109.47000 * 14.99428 * 18 17 16 21 21 H 1.48498 * 109.47017 * 300.00133 * 20 18 17 22 22 H 1.48497 * 109.47289 * 60.00414 * 20 18 17 23 23 H 1.48504 * 109.47264 * 180.02562 * 20 18 17 24 24 C 1.38219 * 120.04422 * 359.71354 * 17 16 15 25 25 Cl 1.73597 * 120.04073 * 180.29965 * 24 17 16 26 26 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 27 27 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 28 28 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 31 31 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 32 32 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 33 33 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 34 34 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 36 36 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 37 37 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 38 38 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 39 39 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 40 40 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 41 41 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 42 42 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 43 43 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 44 44 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 45 45 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 46 46 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 47 47 H 1.07991 * 120.02137 * 359.97438 * 14 13 12 48 48 H 1.08005 * 119.95875 * 180.02562 * 15 14 13 49 49 H 1.08002 * 119.94154 * 180.02562 * 16 15 14 50 50 H 1.09001 * 109.47509 * 134.99697 * 18 17 16 51 51 H 0.96696 * 114.00617 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6988 -7.6071 4.6622 14 6 2.4945 -7.1885 5.7179 15 6 2.8094 -8.0686 6.7358 16 6 2.3315 -9.3653 6.7032 17 6 1.5377 -9.7860 5.6519 18 6 1.0190 -11.2005 5.6191 19 8 1.7553 -11.9557 4.6550 20 14 1.2218 -11.9754 7.3012 21 1 2.6596 -11.9839 7.6721 22 1 0.4566 -11.1907 8.3032 23 1 0.7112 -13.3695 7.2688 24 6 1.2153 -8.9085 4.6338 25 17 0.2124 -9.4345 3.3181 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7209 -1.2494 35 1 1.8938 -0.5134 3.9323 36 1 1.8934 1.0279 3.0423 37 1 0.4400 0.0002 3.0423 38 1 4.3777 -1.3911 0.6315 39 1 4.3770 0.1503 1.5217 40 1 4.3774 -1.3909 2.4118 41 1 1.6655 -2.7116 3.5652 42 1 3.1185 -3.2254 2.6746 43 1 1.8274 -5.0693 1.6337 44 1 0.3749 -4.5551 2.5246 45 1 3.0051 -5.4633 3.7796 46 1 1.5528 -4.9492 4.6711 47 1 2.8686 -6.1758 5.7441 48 1 3.4288 -7.7426 7.5583 49 1 2.5786 -10.0510 7.5001 50 1 -0.0365 -11.1944 5.3468 51 1 1.4748 -12.8781 4.5802 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_10544594_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:36:27 Heat of formation + Delta-G solvation = -158.344322 kcal Electronic energy + Delta-G solvation = -27645.724366 eV Core-core repulsion = 23694.317477 eV Total energy + Delta-G solvation = -3951.406889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37145 -39.33537 -38.25258 -37.32301 -37.20072 -36.86545 -33.70060 -32.55904 -30.94077 -29.48337 -29.13502 -27.89709 -27.41822 -27.34099 -26.31852 -23.78648 -23.03608 -21.91224 -20.45268 -19.05518 -18.51621 -18.00476 -17.71368 -17.56533 -17.17807 -16.25894 -16.07694 -15.97352 -15.67119 -15.34442 -15.06102 -14.92002 -14.90427 -14.72925 -14.50230 -14.21465 -14.01037 -13.71846 -13.55501 -13.49602 -13.33304 -13.22861 -13.15039 -12.96952 -12.95743 -12.80798 -12.47044 -12.43555 -12.37673 -12.15071 -12.10358 -11.97186 -11.75904 -11.74053 -11.72067 -11.52917 -11.46404 -11.37487 -10.41983 -10.34676 -10.11086 -9.86592 -9.22289 0.01481 0.22346 1.06872 1.27767 1.34457 1.40842 1.46437 1.69128 1.84774 2.00024 2.04497 2.42809 2.46673 3.31431 3.66171 3.75415 3.76449 3.92862 3.95164 3.98260 4.07518 4.08979 4.09627 4.16345 4.17390 4.23516 4.30012 4.44215 4.47180 4.61274 4.63051 4.65537 4.67100 4.67767 4.78244 4.83084 4.94659 4.96760 4.97365 5.02095 5.08020 5.08159 5.11993 5.17331 5.29334 5.31135 5.38594 5.38663 5.47742 5.49657 5.50986 5.55245 6.22540 6.58001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.623 6.623 9 C 0.090 3.910 10 C -0.123 4.123 11 C 0.057 3.943 12 O -0.299 6.299 13 C 0.141 3.859 14 C -0.195 4.195 15 C -0.068 4.068 16 C -0.151 4.151 17 C -0.029 4.029 18 C -0.086 4.086 19 O -0.536 6.536 20 Si 0.950 3.050 21 H -0.246 1.246 22 H -0.247 1.247 23 H -0.253 1.253 24 C -0.046 4.046 25 Cl -0.044 7.044 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.134 0.866 50 H 0.080 0.920 51 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 1.154 3.347 3.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.419 2.581 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.015 3.985 10 C -0.161 4.161 11 C -0.018 4.018 12 O -0.212 6.212 13 C 0.094 3.906 14 C -0.214 4.214 15 C -0.086 4.086 16 C -0.169 4.169 17 C -0.030 4.030 18 C -0.196 4.196 19 O -0.342 6.342 20 Si 0.772 3.228 21 H -0.169 1.169 22 H -0.170 1.170 23 H -0.177 1.177 24 C -0.073 4.073 25 Cl -0.015 7.015 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.157 0.843 48 H 0.155 0.845 49 H 0.151 0.849 50 H 0.098 0.902 51 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.123 1.100 3.637 3.962 hybrid contribution -0.003 0.335 -0.260 0.424 sum 1.120 1.435 3.376 3.836 Atomic orbital electron populations 1.21514 0.93781 1.02050 1.01802 1.25787 1.00723 1.02634 1.12720 1.21557 1.00767 0.94900 1.02163 1.21515 1.00596 1.00284 0.96759 0.76703 0.63011 0.53332 0.65031 1.27036 1.07062 1.09520 1.17691 1.27037 1.25037 1.04779 1.04470 1.85333 1.79300 1.46062 1.47507 1.21791 0.98089 0.91488 0.87177 1.21515 1.03473 0.93115 0.97984 1.22776 0.98731 0.80634 0.99697 1.86153 1.70472 1.21795 1.42767 1.18630 0.94608 0.88816 0.88501 1.21281 1.02976 1.01704 0.95464 1.20979 0.97436 0.92503 0.97684 1.20980 0.99649 0.97298 0.99006 1.18984 0.97192 0.93575 0.93270 1.24776 0.98130 0.91839 1.04871 1.86530 1.60869 1.26256 1.60546 0.85708 0.81704 0.80127 0.75271 1.16949 1.17007 1.17709 1.19986 1.02185 0.91723 0.93413 1.98376 1.66734 1.90261 1.46119 0.92709 0.92769 0.92123 0.92516 0.92484 0.92517 0.92116 0.92774 0.92701 0.91514 0.90675 0.90822 0.90813 0.90674 0.91511 0.92384 0.92368 0.89479 0.89486 0.91408 0.91406 0.84277 0.84536 0.84894 0.90168 0.77127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.00 7.85 37.16 0.29 0.29 16 2 C -0.38 0.15 0.53 -90.62 -0.05 0.10 16 3 C -0.14 0.10 7.85 37.16 0.29 0.39 16 4 C -0.13 -0.01 7.85 37.16 0.29 0.28 16 5 Si 1.29 -1.79 8.45 -169.99 -1.44 -3.22 16 6 C -0.51 0.60 8.50 101.05 0.86 1.46 16 7 C -0.51 0.57 8.50 101.05 0.86 1.43 16 8 O -0.62 0.05 8.56 -35.23 -0.30 -0.26 16 9 C 0.09 -0.15 5.12 37.16 0.19 0.04 16 10 C -0.12 0.10 5.95 -26.73 -0.16 -0.05 16 11 C 0.06 -0.07 4.74 37.16 0.18 0.11 16 12 O -0.30 -0.65 9.60 -19.51 -0.19 -0.84 16 13 C 0.14 0.33 6.68 -39.19 -0.26 0.07 16 14 C -0.20 -0.03 9.04 -39.44 -0.36 -0.39 16 15 C -0.07 0.02 10.04 -39.60 -0.40 -0.38 16 16 C -0.15 -0.13 8.66 -39.57 -0.34 -0.47 16 17 C -0.03 -0.06 5.29 -104.61 -0.55 -0.62 16 18 C -0.09 -0.04 2.08 36.01 0.08 0.04 16 19 O -0.54 -0.42 12.82 -35.23 -0.45 -0.88 16 20 Si 0.95 -0.69 25.49 -169.99 -4.33 -5.02 16 21 H -0.25 -0.01 6.73 56.52 0.38 0.37 16 22 H -0.25 0.05 7.11 56.52 0.40 0.45 16 23 H -0.25 0.16 7.11 56.52 0.40 0.56 16 24 C -0.05 -0.15 6.33 -39.36 -0.25 -0.40 16 25 Cl -0.04 -0.16 27.14 -51.86 -1.41 -1.57 16 26 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 27 H 0.05 0.02 8.14 -51.93 -0.42 -0.41 16 28 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 29 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 32 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 33 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 35 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 36 H 0.07 -0.10 7.79 -51.92 -0.40 -0.51 16 37 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 38 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 40 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 41 H 0.06 -0.18 7.21 -51.93 -0.37 -0.56 16 42 H 0.06 -0.18 7.21 -51.93 -0.37 -0.56 16 43 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 45 H 0.07 -0.17 7.66 -51.93 -0.40 -0.57 16 46 H 0.07 -0.18 7.66 -51.93 -0.40 -0.58 16 47 H 0.14 -0.34 6.30 -52.49 -0.33 -0.67 16 48 H 0.14 -0.40 8.06 -52.48 -0.42 -0.82 16 49 H 0.13 -0.09 4.88 -52.49 -0.26 -0.34 16 50 H 0.08 -0.04 7.39 -51.93 -0.38 -0.42 16 51 H 0.38 -1.39 8.74 45.56 0.40 -0.99 16 LS Contribution 417.07 15.07 6.29 6.29 Total: 0.00 -5.90 417.07 -9.48 -15.38 By element: Atomic # 1 Polarization: -3.49 SS G_CDS: -8.31 Total: -11.81 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 0.67 Total: 1.92 kcal Atomic # 8 Polarization: -1.03 SS G_CDS: -0.94 Total: -1.97 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: -5.77 Total: -8.25 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.41 Total: -1.57 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -5.90 -9.48 -15.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10544594_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.961 kcal (2) G-P(sol) polarization free energy of solvation -5.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds