Wall clock time and date at job start Mon Mar 8 2021 07:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35920 * 116.99687 * 179.97438 * 10 9 8 12 12 C 1.38656 * 120.06311 * 359.72667 * 11 10 9 13 13 C 1.38195 * 119.95952 * 179.78893 * 12 11 10 14 14 C 1.38238 * 120.07740 * 0.46156 * 13 12 11 15 15 C 1.38295 * 120.11580 * 359.79223 * 14 13 12 16 16 C 1.50700 * 119.98064 * 179.97438 * 15 14 13 17 17 O 1.42898 * 109.47116 * 254.97632 * 16 15 14 18 18 Si 1.86306 * 109.46942 * 14.97699 * 16 15 14 19 19 H 1.48502 * 109.46945 * 300.00097 * 18 16 15 20 20 H 1.48497 * 109.47287 * 59.99999 * 18 16 15 21 21 H 1.48495 * 109.46891 * 180.02562 * 18 16 15 22 22 C 1.38215 * 120.04040 * 359.97438 * 15 14 13 23 23 Cl 1.73603 * 120.03463 * 179.97438 * 22 15 14 24 24 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 25 25 C 1.38234 * 120.00067 * 0.02562 * 24 8 7 26 26 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 27 27 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 28 28 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 31 31 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 32 32 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 33 33 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 34 34 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 38 38 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 39 39 H 1.08006 * 120.02259 * 359.97438 * 12 11 10 40 40 H 1.08007 * 119.96875 * 180.23026 * 13 12 11 41 41 H 1.07996 * 119.94680 * 179.76500 * 14 13 12 42 42 H 1.08994 * 109.47180 * 134.97267 * 16 15 14 43 43 H 0.96705 * 113.99972 * 179.97438 * 17 16 15 44 44 H 1.08001 * 119.99624 * 180.02562 * 24 8 7 45 45 H 1.07999 * 120.00008 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9735 -3.4895 6.0519 12 6 5.2249 -4.0698 7.0645 13 6 5.8601 -4.6865 8.1257 14 6 7.2409 -4.7170 8.1836 15 6 7.9907 -4.1346 7.1781 16 6 9.4958 -4.1691 7.2446 17 8 9.9860 -2.8788 7.6142 18 14 10.0326 -5.4240 8.5127 19 1 9.4868 -5.0492 9.8419 20 1 9.5232 -6.7650 8.1287 21 1 11.5157 -5.4576 8.5787 22 6 7.3604 -3.5207 6.1121 23 17 8.3017 -2.7891 4.8502 24 6 3.1780 -0.8211 3.8164 25 6 2.7118 -0.1705 2.6894 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4112 34 1 3.5740 -0.8787 -1.5209 35 1 2.5363 -2.7986 0.5823 36 1 3.3666 -3.9577 2.5898 37 1 3.5590 -2.3806 5.9006 38 1 3.5628 -3.9213 5.0094 39 1 4.1460 -4.0426 7.0225 40 1 5.2771 -5.1418 8.9126 41 1 7.7351 -5.1962 9.0158 42 1 9.8964 -4.4443 6.2690 43 1 10.9497 -2.8272 7.6769 44 1 3.3587 -0.2656 4.7248 45 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10544594_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:51:55 Heat of formation + Delta-G solvation = -59.820196 kcal Electronic energy + Delta-G solvation = -25150.712222 eV Core-core repulsion = 21475.968147 eV Total energy + Delta-G solvation = -3674.744075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 350.102 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49171 -40.12335 -38.96891 -37.39650 -37.33469 -33.23738 -32.58984 -31.89293 -30.99302 -29.44210 -28.30828 -28.27728 -27.63836 -26.55305 -23.80805 -23.49973 -22.80867 -21.70025 -19.13916 -18.52827 -18.05216 -17.76390 -17.13500 -17.07075 -16.03513 -16.00173 -15.69726 -15.56653 -15.10843 -14.95468 -14.44120 -14.35378 -14.10405 -14.07766 -14.06197 -13.84125 -13.73223 -13.55544 -13.40916 -13.14578 -13.12860 -12.97876 -12.91905 -12.59552 -12.52853 -12.26919 -12.22338 -12.09523 -11.83187 -11.75426 -11.65896 -10.93263 -10.78770 -10.77091 -10.34130 -9.93852 -9.81738 -9.70113 -9.32145 -0.04465 0.13971 0.14772 0.51059 1.10236 1.15575 1.46512 1.51984 1.82417 1.86808 1.96297 2.01167 2.24508 2.41818 2.65738 2.99457 3.33723 3.61741 3.77737 3.79805 3.89677 3.95393 4.06667 4.11418 4.18675 4.22617 4.29392 4.39866 4.51739 4.66816 4.70157 4.83756 4.83987 4.87596 4.88274 4.88441 4.90070 4.93921 4.99303 5.09739 5.14710 5.25734 5.38736 5.50227 5.55364 5.58227 5.58701 5.67249 5.69352 6.10919 6.17745 6.77829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.126 2.874 3 C -0.464 4.464 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.104 4.104 7 C -0.121 4.121 8 C -0.103 4.103 9 C 0.097 3.903 10 O -0.315 6.315 11 C 0.125 3.875 12 C -0.196 4.196 13 C -0.063 4.063 14 C -0.161 4.161 15 C -0.044 4.044 16 C -0.096 4.096 17 O -0.555 6.555 18 Si 0.992 3.008 19 H -0.254 1.254 20 H -0.254 1.254 21 H -0.253 1.253 22 C -0.072 4.072 23 Cl -0.062 7.062 24 C -0.122 4.122 25 C -0.105 4.105 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.162 0.838 40 H 0.168 0.832 41 H 0.148 0.852 42 H 0.081 0.919 43 H 0.398 0.602 44 H 0.126 0.874 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 -1.931 0.823 3.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.122 4.122 7 C -0.139 4.139 8 C -0.103 4.103 9 C 0.023 3.977 10 O -0.229 6.229 11 C 0.079 3.921 12 C -0.214 4.214 13 C -0.081 4.081 14 C -0.179 4.179 15 C -0.045 4.045 16 C -0.204 4.204 17 O -0.364 6.364 18 Si 0.813 3.187 19 H -0.178 1.178 20 H -0.178 1.178 21 H -0.177 1.177 22 C -0.099 4.099 23 Cl -0.033 7.033 24 C -0.140 4.140 25 C -0.122 4.122 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.180 0.820 40 H 0.185 0.815 41 H 0.165 0.835 42 H 0.099 0.901 43 H 0.248 0.752 44 H 0.144 0.856 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.727 -2.267 1.210 3.747 hybrid contribution 0.595 0.264 -0.286 0.711 sum -2.132 -2.003 0.923 3.068 Atomic orbital electron populations 1.26246 1.21206 1.04561 1.04644 0.77183 0.65412 0.64497 0.61565 1.26295 1.06273 1.19576 1.04904 1.26285 1.06280 1.08559 1.15852 1.28070 1.02421 0.99622 1.11118 1.21395 0.97389 0.95214 0.98201 1.21384 0.99053 1.00531 0.92921 1.19608 1.01261 0.94491 0.94967 1.21845 0.77295 1.01497 0.97037 1.86231 1.22202 1.72705 1.41770 1.18893 0.90337 0.94161 0.88719 1.21584 1.01595 1.03142 0.95099 1.21391 0.93909 0.95340 0.97459 1.21269 0.95126 1.02823 0.98672 1.19318 0.95272 0.97037 0.92874 1.25001 0.92164 0.94831 1.08453 1.86483 1.28366 1.29488 1.92064 0.85116 0.79988 0.76167 0.77420 1.17808 1.17779 1.17699 1.20260 0.89170 1.05665 0.94825 1.98352 1.72331 1.81701 1.50959 1.21382 0.99124 0.93836 0.99679 1.21387 0.97439 1.00720 0.92689 0.91316 0.90600 0.91274 0.91567 0.90568 0.90901 0.90837 0.90567 0.91542 0.84258 0.85394 0.89607 0.89355 0.82031 0.81460 0.83506 0.90088 0.75223 0.85604 0.84365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.58 8.65 113.37 0.98 2.56 16 2 Si 1.13 -5.47 12.32 68.60 0.85 -4.63 16 3 C -0.46 1.44 8.54 113.37 0.97 2.41 16 4 C -0.46 1.54 8.53 113.37 0.97 2.51 16 5 C -0.37 -0.20 4.59 22.27 0.10 -0.10 16 6 C -0.10 -0.18 9.29 22.27 0.21 0.03 16 7 C -0.12 -0.42 9.70 22.27 0.22 -0.20 16 8 C -0.10 -0.43 5.51 -19.86 -0.11 -0.54 16 9 C 0.10 0.16 4.87 71.24 0.35 0.51 16 10 O -0.32 -2.44 9.58 -92.65 -0.89 -3.33 16 11 C 0.13 0.85 6.68 22.52 0.15 1.00 16 12 C -0.20 -0.19 9.04 22.36 0.20 0.01 16 13 C -0.06 0.05 10.04 22.26 0.22 0.27 16 14 C -0.16 -0.33 8.66 22.28 0.19 -0.14 16 15 C -0.04 -0.26 5.29 -19.86 -0.11 -0.36 16 16 C -0.10 -0.21 2.08 71.24 0.15 -0.06 16 17 O -0.56 -1.66 12.80 -148.98 -1.91 -3.57 16 18 Si 0.99 -1.26 25.49 68.60 1.75 0.49 16 19 H -0.25 0.03 6.73 99.48 0.67 0.70 16 20 H -0.25 0.08 7.11 99.48 0.71 0.78 16 21 H -0.25 0.39 7.11 99.48 0.71 1.10 16 22 C -0.07 -0.64 6.33 22.41 0.14 -0.50 16 23 Cl -0.06 -0.65 27.14 -2.72 -0.07 -0.72 16 24 C -0.12 -0.48 9.70 22.27 0.22 -0.26 16 25 C -0.10 -0.21 9.29 22.27 0.21 0.00 16 26 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 27 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H 0.07 -0.26 7.69 -2.39 -0.02 -0.28 16 32 H 0.07 -0.29 7.69 -2.38 -0.02 -0.31 16 33 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 34 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 35 H 0.14 -0.37 7.43 -2.91 -0.02 -0.39 16 36 H 0.13 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.09 -0.13 7.59 -2.39 -0.02 -0.15 16 38 H 0.09 -0.18 7.62 -2.39 -0.02 -0.20 16 39 H 0.16 -0.72 6.30 -2.91 -0.02 -0.74 16 40 H 0.17 -1.24 8.06 -2.91 -0.02 -1.27 16 41 H 0.15 -0.22 4.88 -2.91 -0.01 -0.23 16 42 H 0.08 0.08 7.41 -2.39 -0.02 0.07 16 43 H 0.40 -2.46 8.74 -74.05 -0.65 -3.10 16 44 H 0.13 0.21 8.06 -2.91 -0.02 0.18 16 45 H 0.14 -0.30 7.44 -2.91 -0.02 -0.32 16 Total: 0.00 -16.22 387.76 5.85 -10.37 By element: Atomic # 1 Polarization: -6.81 SS G_CDS: 1.07 Total: -5.75 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.05 Total: 7.13 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -2.79 Total: -6.90 kcal Atomic # 14 Polarization: -6.73 SS G_CDS: 2.59 Total: -4.14 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.07 Total: -0.72 kcal Total: -16.22 5.85 -10.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10544594_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.447 kcal (2) G-P(sol) polarization free energy of solvation -16.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds