Wall clock time and date at job start Mon Mar 8 2021 09:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86308 * 109.46927 * 2 1 4 4 C 1.50702 * 109.47281 * 120.00018 * 2 1 3 5 5 C 1.38130 * 119.99972 * 254.97783 * 4 2 1 6 6 C 1.38257 * 120.07634 * 180.02562 * 5 4 2 7 7 C 1.38472 * 120.08549 * 0.02617 * 6 5 4 8 8 F 1.35102 * 119.99892 * 179.97438 * 7 6 5 9 9 C 1.38391 * 120.00548 * 359.69596 * 7 6 5 10 10 C 1.38668 * 119.91743 * 0.55828 * 9 7 6 11 11 O 1.35893 * 120.04207 * 179.74746 * 10 9 7 12 12 C 1.42899 * 117.00125 * 359.71708 * 11 10 9 13 13 C 1.52997 * 109.47142 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47140 * 55.00252 * 13 12 11 15 15 C 1.53006 * 109.47164 * 175.00200 * 13 12 11 16 16 C 1.52997 * 109.47164 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47415 * 300.00027 * 16 15 13 18 18 H 1.08996 * 109.46550 * 300.00288 * 17 16 15 19 19 O 1.42898 * 109.47113 * 180.02562 * 17 16 15 20 20 C 1.52996 * 109.46972 * 59.99860 * 17 16 15 21 21 C 1.52997 * 109.47165 * 300.00293 * 20 17 16 22 22 H 0.96698 * 113.99688 * 300.00148 * 1 2 3 23 23 H 1.09000 * 109.46689 * 240.00143 * 2 1 3 24 24 H 1.48496 * 110.00209 * 299.99894 * 3 2 1 25 25 H 1.48494 * 110.00048 * 61.32078 * 3 2 1 26 26 H 1.08003 * 119.96530 * 0.04511 * 5 4 2 27 27 H 1.08002 * 119.95656 * 179.97438 * 6 5 4 28 28 H 1.08002 * 120.04402 * 180.29514 * 9 7 6 29 29 H 1.09001 * 109.47015 * 60.00160 * 12 11 10 30 30 H 1.08994 * 109.47120 * 300.00017 * 12 11 10 31 31 H 1.09001 * 109.46998 * 299.99705 * 15 13 12 32 32 H 1.09000 * 109.47050 * 59.99996 * 15 13 12 33 33 H 1.09000 * 109.47140 * 60.00051 * 16 15 13 34 34 H 1.09001 * 109.47230 * 179.97438 * 16 15 13 35 35 H 0.96699 * 113.99486 * 179.97438 * 19 17 16 36 36 H 1.09000 * 109.47054 * 60.00300 * 20 17 16 37 37 H 1.09001 * 109.46997 * 180.02562 * 20 17 16 38 38 H 1.09000 * 109.47140 * 299.99954 * 21 20 17 39 39 H 1.09002 * 109.47045 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4540 0.0163 2.2825 6 6 2.9158 -0.6339 3.4119 7 6 2.8561 -2.0151 3.4910 8 9 3.3084 -2.6486 4.5952 9 6 2.3280 -2.7462 2.4413 10 6 1.8696 -2.0946 1.3063 11 8 1.3552 -2.8104 0.2720 12 6 1.3229 -4.2314 0.4191 13 6 0.7158 -4.8604 -0.8365 14 1 1.2695 -4.5269 -1.7141 15 6 0.7949 -6.3849 -0.7326 16 6 0.1872 -7.0139 -1.9879 17 6 -1.2764 -6.5868 -2.1151 18 1 -1.8297 -6.9203 -1.2373 19 8 -1.8441 -7.1748 -3.2873 20 6 -1.3556 -5.0624 -2.2190 21 6 -0.7479 -4.4334 -0.9637 22 1 -0.3933 0.4417 0.7650 23 1 1.7923 -0.5138 -0.8900 24 1 1.5615 2.4680 -1.2085 25 1 1.5879 2.4586 1.2242 26 1 2.5016 1.0936 2.2230 27 1 3.3244 -0.0638 4.2332 28 1 2.2768 -3.8231 2.5043 29 1 0.7168 -4.4932 1.2864 30 1 2.3371 -4.6055 0.5583 31 1 1.8376 -6.6892 -0.6416 32 1 0.2411 -6.7185 0.1450 33 1 0.7406 -6.6804 -2.8658 34 1 0.2440 -8.1000 -1.9141 35 1 -2.7727 -6.9468 -3.4313 36 1 -0.8022 -4.7288 -3.0969 37 1 -2.3984 -4.7580 -2.3092 38 1 -1.3013 -4.7669 -0.0859 39 1 -0.8047 -3.3473 -1.0376 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10564894_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:19:20 Heat of formation + Delta-G solvation = -148.342189 kcal Electronic energy + Delta-G solvation = -22726.505557 eV Core-core repulsion = 19128.934029 eV Total energy + Delta-G solvation = -3597.571528 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.03678 -41.52746 -40.14436 -38.70318 -37.54231 -36.68368 -32.57985 -32.12310 -31.84420 -30.85718 -26.87323 -26.52676 -23.97560 -23.72761 -22.84024 -22.04557 -20.90088 -19.66616 -18.49006 -18.22879 -17.88689 -17.27856 -17.01554 -16.66502 -16.52003 -16.36606 -15.92323 -15.60488 -15.50708 -15.25624 -14.78387 -14.72338 -14.61041 -14.05282 -13.76244 -13.46328 -13.28004 -13.20879 -12.99376 -12.62123 -12.54382 -12.20753 -12.16221 -11.94592 -11.72525 -11.60298 -11.58658 -11.12338 -10.74495 -10.56191 -10.04738 -9.33241 -4.90079 -0.08649 0.18071 1.31271 1.58241 1.96607 2.03162 2.38540 3.09035 3.19882 3.46764 3.56652 3.61056 3.66987 3.72236 3.77560 3.96701 3.96988 4.05707 4.10870 4.22981 4.29293 4.33113 4.36635 4.45161 4.47943 4.56882 4.59184 4.78630 4.87227 4.91434 4.96264 5.03775 5.05740 5.07725 5.12168 5.15445 5.16483 5.30264 5.40258 5.60394 6.25231 6.54024 6.82399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.072 4.072 3 Si 0.772 3.228 4 C -0.167 4.167 5 C -0.050 4.050 6 C -0.186 4.186 7 C 0.129 3.871 8 F -0.143 7.143 9 C -0.253 4.253 10 C 0.174 3.826 11 O -0.307 6.307 12 C 0.056 3.944 13 C -0.081 4.081 14 H 0.076 0.924 15 C -0.103 4.103 16 C -0.113 4.113 17 C 0.101 3.899 18 H 0.062 0.938 19 O -0.590 6.590 20 C -0.147 4.147 21 C -0.107 4.107 22 H 0.383 0.617 23 H 0.111 0.889 24 H -0.305 1.305 25 H -0.266 1.266 26 H 0.164 0.836 27 H 0.159 0.841 28 H 0.151 0.849 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.393 0.607 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 0.919 1.759 2.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.180 4.180 3 Si 0.676 3.324 4 C -0.168 4.168 5 C -0.068 4.068 6 C -0.205 4.205 7 C 0.110 3.890 8 F -0.122 7.122 9 C -0.273 4.273 10 C 0.128 3.872 11 O -0.220 6.220 12 C -0.018 4.018 13 C -0.100 4.100 14 H 0.095 0.905 15 C -0.141 4.141 16 C -0.151 4.151 17 C 0.043 3.957 18 H 0.080 0.920 19 O -0.398 6.398 20 C -0.184 4.184 21 C -0.144 4.144 22 H 0.232 0.768 23 H 0.129 0.871 24 H -0.233 1.233 25 H -0.192 1.192 26 H 0.181 0.819 27 H 0.177 0.823 28 H 0.169 0.831 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.242 0.758 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.827 1.199 1.013 2.409 hybrid contribution -1.610 -0.384 0.823 1.849 sum 0.217 0.815 1.835 2.020 Atomic orbital electron populations 1.86618 1.18490 1.80317 1.49815 1.25094 0.83458 1.11741 0.97739 0.94052 0.90093 0.71355 0.76900 1.19819 1.06839 0.90983 0.99147 1.21049 0.93989 1.01050 0.90687 1.21269 1.05853 0.92024 1.01374 1.17664 0.96994 0.91244 0.83118 1.91514 1.86651 1.82699 1.51324 1.21328 1.09192 1.02031 0.94734 1.18595 0.91406 0.91020 0.86229 1.86158 1.76690 1.20680 1.38450 1.23110 1.01910 0.77222 0.99604 1.21165 0.96527 0.95428 0.96877 0.90516 1.21439 1.02413 0.92375 0.97860 1.21461 0.93911 1.01081 0.98602 1.21909 0.94856 0.91560 0.87388 0.91992 1.86478 1.31965 1.74954 1.46438 1.22212 1.01737 0.95782 0.98709 1.21451 0.94794 1.00478 0.97716 0.76793 0.87079 1.23332 1.19187 0.81887 0.82347 0.83150 0.90994 0.90442 0.89705 0.90381 0.91954 0.91044 0.75775 0.92136 0.91017 0.91353 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.87 12.88 -148.98 -1.92 -3.79 16 2 C -0.07 -0.02 2.38 71.24 0.17 0.15 16 3 Si 0.77 -2.34 30.25 68.60 2.07 -0.27 16 4 C -0.17 -0.06 5.27 -19.76 -0.10 -0.16 16 5 C -0.05 0.13 8.65 22.25 0.19 0.32 16 6 C -0.19 0.22 10.02 22.33 0.22 0.45 16 7 C 0.13 0.30 7.30 22.36 0.16 0.46 16 8 F -0.14 -0.68 17.27 44.97 0.78 0.09 16 9 C -0.25 -0.40 9.02 22.41 0.20 -0.19 16 10 C 0.17 0.41 6.66 22.50 0.15 0.56 16 11 O -0.31 -0.88 9.00 -92.34 -0.83 -1.71 16 12 C 0.06 -0.11 4.12 71.98 0.30 0.19 16 13 C -0.08 0.16 2.43 -10.79 -0.03 0.13 16 14 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 15 C -0.10 0.40 5.20 30.60 0.16 0.56 16 16 C -0.11 0.04 5.57 30.59 0.17 0.21 16 17 C 0.10 0.02 3.47 30.59 0.11 0.12 16 18 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 19 O -0.59 -1.72 13.32 -148.98 -1.98 -3.70 16 20 C -0.15 0.03 5.55 30.59 0.17 0.20 16 21 C -0.11 0.04 5.10 30.59 0.16 0.20 16 22 H 0.38 -1.09 8.70 -74.06 -0.64 -1.73 16 23 H 0.11 0.15 7.83 -2.39 -0.02 0.13 16 24 H -0.31 -1.62 7.11 99.48 0.71 -0.92 16 25 H -0.27 0.47 6.68 99.48 0.66 1.14 16 26 H 0.16 -1.15 4.86 -2.91 -0.01 -1.16 16 27 H 0.16 -0.81 8.06 -2.91 -0.02 -0.83 16 28 H 0.15 -0.18 6.30 -2.91 -0.02 -0.20 16 29 H 0.07 -0.24 7.65 -2.39 -0.02 -0.26 16 30 H 0.08 -0.32 7.67 -2.39 -0.02 -0.34 16 31 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.08 -0.42 8.14 -2.39 -0.02 -0.43 16 33 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.39 -1.85 9.08 -74.06 -0.67 -2.52 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.06 0.20 7.82 -2.39 -0.02 0.19 16 Total: 0.00 -13.69 318.48 -0.10 -13.79 By element: Atomic # 1 Polarization: -7.36 SS G_CDS: -0.25 Total: -7.61 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 2.03 Total: 3.19 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -4.73 Total: -9.20 kcal Atomic # 9 Polarization: -0.68 SS G_CDS: 0.78 Total: 0.09 kcal Atomic # 14 Polarization: -2.34 SS G_CDS: 2.07 Total: -0.27 kcal Total: -13.69 -0.10 -13.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10564894_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.550 kcal (2) G-P(sol) polarization free energy of solvation -13.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds