Wall clock time and date at job start Mon Mar 8 2021 07:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47655 * 2 1 4 4 C 1.52995 * 109.46994 * 239.99552 * 2 1 3 5 5 Si 1.86299 * 109.46921 * 119.99936 * 2 1 3 6 6 C 1.86297 * 109.47314 * 299.99766 * 5 2 1 7 7 C 1.86303 * 109.47163 * 179.97438 * 5 2 1 8 8 O 1.63104 * 109.46989 * 59.99970 * 5 2 1 9 9 C 1.42899 * 113.99972 * 180.02562 * 8 5 2 10 10 C 1.53000 * 109.47405 * 179.97438 * 9 8 5 11 11 O 1.42903 * 109.46726 * 64.99720 * 10 9 8 12 12 C 1.35925 * 116.99722 * 180.02562 * 11 10 9 13 13 C 1.38677 * 120.05563 * 0.02562 * 12 11 10 14 14 C 1.38194 * 119.94757 * 179.97438 * 13 12 11 15 15 C 1.38235 * 120.07709 * 359.96930 * 14 13 12 16 16 C 1.38291 * 120.11156 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.97527 * 179.97438 * 16 15 14 18 18 O 1.42902 * 109.47306 * 255.00622 * 17 16 15 19 19 Si 1.86306 * 109.46824 * 15.00365 * 17 16 15 20 20 H 1.48499 * 109.46799 * 179.97438 * 19 17 16 21 21 H 1.48502 * 109.47098 * 299.99538 * 19 17 16 22 22 H 1.48494 * 109.47197 * 59.99897 * 19 17 16 23 23 C 1.38191 * 120.05286 * 359.79052 * 16 15 14 24 24 Br 1.89100 * 120.04052 * 180.25003 * 23 16 15 25 25 H 1.08999 * 109.47189 * 300.00592 * 1 2 3 26 26 H 1.08998 * 109.46838 * 59.99525 * 1 2 3 27 27 H 1.08991 * 109.47403 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47445 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46663 * 300.00314 * 3 2 1 30 30 H 1.09002 * 109.47015 * 59.99900 * 3 2 1 31 31 H 1.08999 * 109.47775 * 300.00469 * 4 2 1 32 32 H 1.09008 * 109.47049 * 60.00557 * 4 2 1 33 33 H 1.09002 * 109.47582 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47381 * 179.97438 * 6 5 2 35 35 H 1.08999 * 109.47492 * 299.99982 * 6 5 2 36 36 H 1.09004 * 109.46818 * 60.00009 * 6 5 2 37 37 H 1.08998 * 109.46674 * 300.00064 * 7 5 2 38 38 H 1.08991 * 109.47013 * 60.00204 * 7 5 2 39 39 H 1.08998 * 109.47060 * 179.97438 * 7 5 2 40 40 H 1.09002 * 109.47445 * 59.99903 * 9 8 5 41 41 H 1.09002 * 109.47167 * 299.99822 * 9 8 5 42 42 H 1.09002 * 109.47398 * 184.99964 * 10 9 8 43 43 H 1.09001 * 109.47194 * 305.00145 * 10 9 8 44 44 H 1.07994 * 120.02801 * 359.97438 * 13 12 11 45 45 H 1.08005 * 119.95649 * 180.02562 * 14 13 12 46 46 H 1.07993 * 119.94653 * 180.02562 * 15 14 13 47 47 H 1.08995 * 109.47442 * 135.00111 * 17 16 15 48 48 H 0.96698 * 114.00034 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2491 5 14 2.1509 -0.8782 1.5212 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5208 8 8 1.6072 -2.4160 1.5211 9 6 2.0283 -3.1814 2.6520 10 6 1.4625 -4.5991 2.5477 11 8 2.0309 -5.2564 1.4133 12 6 1.6305 -6.5334 1.1754 13 6 0.7096 -7.1406 2.0160 14 6 0.3038 -8.4388 1.7718 15 6 0.8142 -9.1324 0.6904 16 6 1.7325 -8.5297 -0.1496 17 6 2.2874 -9.2889 -1.3273 18 8 3.6275 -9.6958 -1.0431 19 14 1.2362 -10.7934 -1.6472 20 1 1.7826 -11.5412 -2.8081 21 1 1.2442 -11.6673 -0.4466 22 1 -0.1563 -10.3706 -1.9425 23 6 2.1390 -7.2304 0.0877 24 35 3.3895 -6.4041 -1.0653 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -1.7490 -1.2492 32 1 1.6766 -0.2075 -2.1392 33 1 3.1300 -0.7218 -1.2490 34 1 1.8929 -0.5141 3.9323 35 1 1.8934 1.0277 3.0423 36 1 0.4400 0.0000 3.0422 37 1 4.3769 -1.3930 0.6309 38 1 4.3776 0.1485 1.5206 39 1 4.3772 -1.3924 2.4111 40 1 1.6635 -2.7112 3.5652 41 1 3.1172 -3.2253 2.6759 42 1 1.7088 -5.1561 3.4517 43 1 0.3794 -4.5506 2.4346 44 1 0.3100 -6.5993 2.8607 45 1 -0.4137 -8.9117 2.4261 46 1 0.4952 -10.1467 0.5013 47 1 2.2816 -8.6475 -2.2085 48 1 4.0485 -10.1906 -1.7594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10910592_10902662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:27:27 Heat of formation + Delta-G solvation = -131.402343 kcal Electronic energy + Delta-G solvation = -26613.749027 eV Core-core repulsion = 22839.029838 eV Total energy + Delta-G solvation = -3774.719189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 390.082 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34718 -39.31381 -37.82154 -37.16031 -36.83198 -33.49271 -32.21294 -30.89156 -29.68280 -29.27636 -29.06324 -27.84389 -27.38593 -26.90630 -24.14467 -23.53159 -21.83178 -20.41412 -19.06755 -18.48304 -18.04082 -17.59694 -17.33502 -16.51953 -16.06660 -15.96066 -15.74447 -15.55990 -15.24249 -14.85953 -14.78255 -14.66412 -14.46086 -14.05047 -14.00722 -13.76726 -13.52347 -13.37746 -13.36631 -13.17607 -12.96581 -12.95031 -12.87087 -12.51005 -12.41536 -12.19347 -12.09138 -11.96596 -11.81053 -11.78154 -11.69687 -11.64974 -11.50399 -11.24872 -11.04122 -10.31246 -10.28563 -10.05479 -9.85152 -9.24562 -0.02167 0.21504 0.73773 1.11728 1.47439 1.52840 1.53183 1.78510 1.88291 2.11819 2.14917 2.46373 2.48239 3.37488 3.75239 3.83611 4.00708 4.03733 4.09400 4.10871 4.11832 4.14616 4.22330 4.32359 4.39463 4.46213 4.50766 4.64968 4.72092 4.74316 4.77946 4.79436 4.80462 4.81334 4.82960 4.98713 4.98978 5.08240 5.08517 5.15640 5.19485 5.30908 5.33029 5.39943 5.42696 5.48713 5.57671 5.60567 5.65079 6.29520 6.80281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.384 4.384 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.315 2.685 6 C -0.512 4.512 7 C -0.520 4.520 8 O -0.637 6.637 9 C 0.075 3.925 10 C 0.044 3.956 11 O -0.309 6.309 12 C 0.146 3.854 13 C -0.203 4.203 14 C -0.054 4.054 15 C -0.171 4.171 16 C -0.026 4.026 17 C -0.099 4.099 18 O -0.551 6.551 19 Si 0.990 3.010 20 H -0.253 1.253 21 H -0.254 1.254 22 H -0.256 1.256 23 C -0.131 4.131 24 Br -0.043 7.043 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.165 0.835 45 H 0.167 0.833 46 H 0.144 0.856 47 H 0.082 0.918 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.631 -0.810 3.750 4.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.426 4.426 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.444 2.556 6 C -0.615 4.615 7 C -0.621 4.621 8 O -0.596 6.596 9 C 0.000 4.000 10 C -0.030 4.030 11 O -0.222 6.222 12 C 0.097 3.903 13 C -0.222 4.222 14 C -0.073 4.073 15 C -0.190 4.190 16 C -0.028 4.028 17 C -0.208 4.208 18 O -0.360 6.360 19 Si 0.812 3.188 20 H -0.177 1.177 21 H -0.178 1.178 22 H -0.180 1.180 23 C -0.211 4.211 24 Br 0.043 6.957 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.183 0.817 45 H 0.184 0.816 46 H 0.162 0.838 47 H 0.100 0.900 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -2.793 -0.958 3.448 4.539 hybrid contribution 0.455 0.531 -0.307 0.764 sum -2.337 -0.427 3.141 3.938 Atomic orbital electron populations 1.21522 0.94094 1.01657 1.01946 1.25941 1.00532 1.03024 1.13101 1.21596 1.01140 0.94652 1.02323 1.21515 1.00743 0.99845 0.97163 0.76226 0.62085 0.52847 0.64397 1.27012 1.07059 1.09770 1.17633 1.27152 1.25996 1.04740 1.04231 1.85405 1.79300 1.46651 1.48286 1.22366 0.99782 0.89561 0.88306 1.23400 0.99660 0.92322 0.87641 1.86245 1.64755 1.22742 1.48489 1.18852 0.93463 0.84879 0.93086 1.21628 1.00690 0.97643 1.02253 1.21419 0.97102 0.93087 0.95643 1.21262 0.99678 1.01360 0.96701 1.19317 0.95720 0.91392 0.96398 1.25031 0.91237 1.07298 0.97192 1.86484 1.25644 1.77435 1.46422 0.85133 0.78033 0.75592 0.80056 1.17706 1.17805 1.18000 1.21125 1.04062 0.96618 0.99263 1.96645 1.56528 1.80515 1.62021 0.91666 0.93483 0.92743 0.92068 0.93201 0.91457 0.93037 0.93367 0.92560 0.90488 0.90360 0.90756 0.91987 0.90445 0.91010 0.87433 0.91277 0.88093 0.89794 0.81747 0.81590 0.83833 0.90026 0.75304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.18 7.85 71.98 0.56 0.39 16 2 C -0.38 -0.38 0.53 -10.80 -0.01 -0.38 16 3 C -0.14 0.04 7.85 71.98 0.56 0.60 16 4 C -0.14 -0.48 7.85 71.98 0.56 0.08 16 5 Si 1.31 -2.19 8.45 68.60 0.58 -1.61 16 6 C -0.51 1.75 8.50 113.37 0.96 2.71 16 7 C -0.52 -0.05 8.50 113.37 0.96 0.91 16 8 O -0.64 -0.83 8.52 -144.34 -1.23 -2.06 16 9 C 0.07 -0.23 5.50 71.98 0.40 0.17 16 10 C 0.04 -0.10 5.12 71.98 0.37 0.27 16 11 O -0.31 -1.77 9.44 -88.07 -0.83 -2.60 16 12 C 0.15 0.87 6.68 22.52 0.15 1.02 16 13 C -0.20 -0.04 9.04 22.36 0.20 0.17 16 14 C -0.05 0.05 10.04 22.26 0.22 0.28 16 15 C -0.17 -0.38 8.66 22.28 0.19 -0.19 16 16 C -0.03 -0.15 5.29 -19.86 -0.11 -0.26 16 17 C -0.10 -0.23 2.01 71.24 0.14 -0.09 16 18 O -0.55 -1.49 12.69 -148.98 -1.89 -3.38 16 19 Si 0.99 -0.86 25.49 68.60 1.75 0.89 16 20 H -0.25 0.30 7.11 99.48 0.71 1.01 16 21 H -0.25 -0.06 6.73 99.48 0.67 0.61 16 22 H -0.26 -0.10 7.11 99.48 0.71 0.61 16 23 C -0.13 -1.11 6.23 22.40 0.14 -0.97 16 24 Br -0.04 -0.40 31.44 -20.37 -0.64 -1.04 16 25 H 0.06 -0.07 7.79 -2.39 -0.02 -0.09 16 26 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.05 0.13 7.97 -2.39 -0.02 0.11 16 28 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 29 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 31 H 0.05 0.28 7.97 -2.39 -0.02 0.26 16 32 H 0.05 0.19 8.14 -2.38 -0.02 0.17 16 33 H 0.06 0.16 7.79 -2.39 -0.02 0.14 16 34 H 0.08 -0.41 7.48 -2.39 -0.02 -0.42 16 35 H 0.08 -0.28 7.79 -2.39 -0.02 -0.30 16 36 H 0.07 -0.24 7.79 -2.38 -0.02 -0.26 16 37 H 0.06 0.16 7.79 -2.39 -0.02 0.15 16 38 H 0.08 -0.07 7.79 -2.39 -0.02 -0.09 16 39 H 0.07 -0.08 7.48 -2.39 -0.02 -0.10 16 40 H 0.11 -1.01 7.21 -2.39 -0.02 -1.03 16 41 H 0.07 -0.24 7.21 -2.39 -0.02 -0.26 16 42 H 0.10 -0.77 7.66 -2.39 -0.02 -0.79 16 43 H 0.08 -0.35 7.66 -2.39 -0.02 -0.36 16 44 H 0.17 -1.00 6.30 -2.91 -0.02 -1.02 16 45 H 0.17 -1.27 8.06 -2.91 -0.02 -1.30 16 46 H 0.14 -0.15 4.88 -2.91 -0.01 -0.17 16 47 H 0.08 0.12 7.21 -2.39 -0.02 0.10 16 48 H 0.40 -2.47 8.74 -74.06 -0.65 -3.12 16 Total: 0.00 -15.48 399.20 4.07 -11.40 By element: Atomic # 1 Polarization: -7.33 SS G_CDS: 1.01 Total: -6.32 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.33 Total: 4.71 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: -3.95 Total: -8.03 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.33 Total: -0.73 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -0.64 Total: -1.04 kcal Total: -15.48 4.07 -11.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_10902662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.999 kcal (2) G-P(sol) polarization free energy of solvation -15.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds