Wall clock time and date at job start Mon Mar 8 2021 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42890 * 1 3 3 Si 1.86305 * 109.46976 * 2 1 4 4 C 1.50702 * 109.47571 * 240.00134 * 2 1 3 5 5 C 1.38238 * 119.97967 * 104.99427 * 4 2 1 6 6 C 1.38285 * 120.11971 * 180.02562 * 5 4 2 7 7 C 1.38148 * 120.06801 * 0.02562 * 6 5 4 8 8 C 1.38719 * 119.95689 * 359.97438 * 7 6 5 9 9 O 1.35911 * 120.05657 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00354 * 0.02888 * 9 8 7 11 11 C 1.53006 * 109.47167 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46981 * 54.99610 * 11 10 9 13 13 C 1.52997 * 109.47076 * 174.99809 * 11 10 9 14 14 C 1.52997 * 109.47224 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47260 * 300.00249 * 14 13 11 16 16 H 1.08998 * 109.46965 * 300.00068 * 15 14 13 17 17 O 1.42899 * 109.47218 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47206 * 59.99739 * 15 14 13 19 19 C 1.52998 * 109.47024 * 294.99868 * 11 10 9 20 20 C 1.38241 * 119.97281 * 285.02133 * 4 2 1 21 21 Br 1.89101 * 120.03725 * 359.94997 * 20 4 2 22 22 H 0.96700 * 114.00065 * 60.00698 * 1 2 3 23 23 H 1.09000 * 109.47507 * 119.99839 * 2 1 3 24 24 H 1.48491 * 109.99928 * 59.99645 * 3 2 1 25 25 H 1.48500 * 110.00100 * 181.31927 * 3 2 1 26 26 H 1.08005 * 119.94393 * 0.02562 * 5 4 2 27 27 H 1.07992 * 119.96568 * 179.72464 * 6 5 4 28 28 H 1.08003 * 120.01953 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.46733 * 299.99290 * 10 9 8 30 30 H 1.08999 * 109.47227 * 59.99724 * 10 9 8 31 31 H 1.08996 * 109.47341 * 300.00037 * 13 11 10 32 32 H 1.09002 * 109.47378 * 60.00044 * 13 11 10 33 33 H 1.08998 * 109.47187 * 60.00182 * 14 13 11 34 34 H 1.08996 * 109.47370 * 179.97438 * 14 13 11 35 35 H 0.96696 * 113.99559 * 180.02562 * 17 15 14 36 36 H 1.09002 * 109.47378 * 60.00230 * 18 15 14 37 37 H 1.08996 * 109.47341 * 180.02562 * 18 15 14 38 38 H 1.08998 * 109.47231 * 300.00186 * 19 11 10 39 39 H 1.09005 * 109.46812 * 60.00071 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.4537 0.0174 -2.2833 6 6 2.9151 -0.6315 -3.4140 7 6 2.8547 -2.0093 -3.4945 8 6 2.3311 -2.7425 -2.4398 9 8 2.2702 -4.0980 -2.5171 10 6 2.7639 -4.7025 -3.7141 11 6 2.6141 -6.2221 -3.6174 12 1 1.5754 -6.4718 -3.4008 13 6 3.0260 -6.8607 -4.9453 14 6 2.8769 -8.3803 -4.8484 15 6 3.7736 -8.9104 -3.7277 16 1 4.8121 -8.6603 -3.9445 17 8 3.6348 -10.3297 -3.6377 18 6 3.3617 -8.2718 -2.3998 19 6 3.5105 -6.7526 -2.4967 20 6 1.8690 -2.0893 -1.3057 21 35 1.1550 -3.0846 0.1350 22 1 -0.3933 0.4416 -0.7651 23 1 1.7923 -0.5138 0.8900 24 1 1.5613 2.4679 1.2084 25 1 3.5345 1.7704 -0.0321 26 1 2.5016 1.0947 -2.2228 27 1 3.3186 -0.0602 -4.2368 28 1 3.2149 -2.5152 -4.3781 29 1 2.1951 -4.3347 -4.5681 30 1 3.8162 -4.4488 -3.8419 31 1 2.3875 -6.4828 -5.7437 32 1 4.0647 -6.6110 -5.1619 33 1 1.8384 -8.6304 -4.6317 34 1 3.1699 -8.8352 -5.7946 35 1 4.1758 -10.7346 -2.9460 36 1 2.3232 -8.5218 -2.1830 37 1 4.0008 -8.6490 -1.6015 38 1 4.5491 -6.5029 -2.7131 39 1 3.2170 -6.2976 -1.5506 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_10910592_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:21:00 Heat of formation + Delta-G solvation = -101.135849 kcal Electronic energy + Delta-G solvation = -22126.368429 eV Core-core repulsion = 18660.479894 eV Total energy + Delta-G solvation = -3465.888535 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.050 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.54028 -40.25365 -39.11903 -37.38181 -36.66376 -33.49430 -32.41682 -31.91369 -31.46603 -29.89924 -27.36854 -26.26714 -23.96394 -23.49855 -22.96553 -21.78106 -20.96216 -19.21874 -18.22947 -18.00421 -17.31257 -17.23226 -17.08407 -16.41811 -16.20666 -15.55277 -15.52439 -15.20808 -14.91785 -14.76723 -14.36320 -14.13497 -13.99296 -13.61501 -13.40816 -13.30317 -13.07406 -12.75698 -12.61324 -12.25191 -12.19740 -11.99616 -11.89246 -11.78461 -11.65572 -11.64725 -11.18205 -10.85985 -10.75811 -10.48003 -9.89929 -9.29173 -5.07245 -0.08278 0.15156 0.79062 1.21497 1.62286 1.89407 2.02158 2.40556 3.10931 3.36326 3.52145 3.53990 3.60154 3.62428 3.77468 3.86711 3.93770 3.98191 4.03541 4.16127 4.23877 4.25290 4.27650 4.35805 4.39355 4.42400 4.49235 4.60106 4.70371 4.86400 4.90901 4.96828 5.01664 5.03319 5.07898 5.09293 5.21045 5.24876 5.34393 5.45858 6.17021 6.56675 6.67707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.525 6.525 2 C -0.075 4.075 3 Si 0.689 3.311 4 C -0.056 4.056 5 C -0.150 4.150 6 C -0.058 4.058 7 C -0.201 4.201 8 C 0.159 3.841 9 O -0.297 6.297 10 C 0.061 3.939 11 C -0.087 4.087 12 H 0.086 0.914 13 C -0.109 4.109 14 C -0.111 4.111 15 C 0.103 3.897 16 H 0.054 0.946 17 O -0.569 6.569 18 C -0.152 4.152 19 C -0.111 4.111 20 C -0.107 4.107 21 Br -0.025 7.025 22 H 0.377 0.623 23 H 0.119 0.881 24 H -0.251 1.251 25 H -0.255 1.255 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.379 0.621 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 2.625 -4.518 5.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.330 6.330 2 C -0.186 4.186 3 Si 0.590 3.410 4 C -0.058 4.058 5 C -0.168 4.168 6 C -0.076 4.076 7 C -0.221 4.221 8 C 0.111 3.889 9 O -0.210 6.210 10 C -0.014 4.014 11 C -0.105 4.105 12 H 0.105 0.895 13 C -0.147 4.147 14 C -0.149 4.149 15 C 0.044 3.956 16 H 0.072 0.928 17 O -0.375 6.375 18 C -0.190 4.190 19 C -0.149 4.149 20 C -0.187 4.187 21 Br 0.061 6.939 22 H 0.224 0.776 23 H 0.136 0.864 24 H -0.175 1.175 25 H -0.180 1.180 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.226 0.774 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.936 2.474 -3.343 4.588 hybrid contribution 0.812 -0.468 0.071 0.940 sum 2.748 2.006 -3.273 4.721 Atomic orbital electron populations 1.86594 1.16051 1.81581 1.48789 1.25234 0.86089 1.10280 0.96971 0.94906 0.81229 0.77328 0.87553 1.20165 0.97185 0.91563 0.96909 1.20882 1.02588 0.99500 0.93831 1.21063 0.95536 0.93620 0.97426 1.21317 1.06305 0.95265 0.99202 1.18624 0.94070 0.83326 0.92880 1.86188 1.78366 1.16000 1.40413 1.22998 0.99069 0.93631 0.85718 1.21225 1.01890 0.91185 0.96238 0.89519 1.21472 1.02280 0.94727 0.96214 1.21435 1.00649 0.94393 0.98406 1.21843 0.98389 0.80528 0.94821 0.92768 1.86516 1.70843 1.20199 1.59939 1.22266 1.02981 0.95966 0.97771 1.21506 0.99454 0.94796 0.99141 1.20967 1.09265 0.93622 0.94875 1.96746 1.83987 1.71989 1.41173 0.77582 0.86377 1.17550 1.17960 0.84463 0.84482 0.84437 0.91455 0.91586 0.90730 0.91280 0.90897 0.90802 0.77367 0.90892 0.91518 0.91831 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.34 12.70 -35.23 -0.45 -0.78 16 2 C -0.08 -0.03 2.02 36.01 0.07 0.04 16 3 Si 0.69 -0.78 29.91 -169.99 -5.09 -5.86 16 4 C -0.06 -0.04 5.26 -104.62 -0.55 -0.59 16 5 C -0.15 0.19 8.66 -39.56 -0.34 -0.15 16 6 C -0.06 0.10 10.04 -39.60 -0.40 -0.30 16 7 C -0.20 0.13 9.04 -39.44 -0.36 -0.23 16 8 C 0.16 0.25 6.68 -39.20 -0.26 -0.02 16 9 O -0.30 -0.43 9.01 -19.46 -0.18 -0.60 16 10 C 0.06 -0.08 4.12 37.16 0.15 0.07 16 11 C -0.09 0.12 2.43 -90.62 -0.22 -0.10 16 12 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 13 C -0.11 0.24 5.20 -26.73 -0.14 0.10 16 14 C -0.11 0.06 5.57 -26.73 -0.15 -0.09 16 15 C 0.10 -0.03 3.47 -26.73 -0.09 -0.12 16 16 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 17 O -0.57 -0.63 13.32 -35.23 -0.47 -1.10 16 18 C -0.15 0.10 5.54 -26.76 -0.15 -0.05 16 19 C -0.11 0.09 5.10 -26.76 -0.14 -0.05 16 20 C -0.11 -0.26 6.23 -39.38 -0.25 -0.50 16 21 Br -0.02 -0.09 31.44 -68.01 -2.14 -2.22 16 22 H 0.38 -1.29 8.70 45.56 0.40 -0.90 16 23 H 0.12 0.21 7.22 -51.93 -0.38 -0.17 16 24 H -0.25 -0.53 7.11 56.52 0.40 -0.13 16 25 H -0.26 -0.32 7.11 56.52 0.40 0.08 16 26 H 0.14 -0.53 5.12 -52.48 -0.27 -0.80 16 27 H 0.14 -0.58 8.06 -52.49 -0.42 -1.00 16 28 H 0.14 -0.37 6.30 -52.48 -0.33 -0.70 16 29 H 0.07 -0.16 7.66 -51.93 -0.40 -0.56 16 30 H 0.07 -0.15 7.66 -51.93 -0.40 -0.55 16 31 H 0.07 -0.21 8.14 -51.93 -0.42 -0.64 16 32 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 35 H 0.38 -1.01 9.08 45.56 0.41 -0.59 16 36 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 37 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 38 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.08 0.04 7.82 -51.93 -0.41 -0.36 16 LS Contribution 330.86 15.07 4.99 4.99 Total: 0.00 -6.74 330.86 -10.93 -17.68 By element: Atomic # 1 Polarization: -5.30 SS G_CDS: -4.79 Total: -10.10 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.81 Total: -1.99 kcal Atomic # 8 Polarization: -1.40 SS G_CDS: -1.09 Total: -2.49 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: -5.09 Total: -5.86 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -2.14 Total: -2.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -6.74 -10.93 -17.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.458 kcal (2) G-P(sol) polarization free energy of solvation -6.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds