Wall clock time and date at job start Mon Mar 8 2021 07:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42890 * 1 3 3 Si 1.86305 * 109.46976 * 2 1 4 4 C 1.50702 * 109.47571 * 240.00134 * 2 1 3 5 5 C 1.38238 * 119.97967 * 104.99427 * 4 2 1 6 6 C 1.38285 * 120.11971 * 180.02562 * 5 4 2 7 7 C 1.38148 * 120.06801 * 0.02562 * 6 5 4 8 8 C 1.38719 * 119.95689 * 359.97438 * 7 6 5 9 9 O 1.35911 * 120.05657 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00354 * 0.02888 * 9 8 7 11 11 C 1.53006 * 109.47167 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.46981 * 54.99610 * 11 10 9 13 13 C 1.52997 * 109.47076 * 174.99809 * 11 10 9 14 14 C 1.52997 * 109.47224 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47260 * 300.00249 * 14 13 11 16 16 H 1.08998 * 109.46965 * 300.00068 * 15 14 13 17 17 O 1.42899 * 109.47218 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47206 * 59.99739 * 15 14 13 19 19 C 1.52998 * 109.47024 * 294.99868 * 11 10 9 20 20 C 1.38241 * 119.97281 * 285.02133 * 4 2 1 21 21 Br 1.89101 * 120.03725 * 359.94997 * 20 4 2 22 22 H 0.96700 * 114.00065 * 60.00698 * 1 2 3 23 23 H 1.09000 * 109.47507 * 119.99839 * 2 1 3 24 24 H 1.48491 * 109.99928 * 59.99645 * 3 2 1 25 25 H 1.48500 * 110.00100 * 181.31927 * 3 2 1 26 26 H 1.08005 * 119.94393 * 0.02562 * 5 4 2 27 27 H 1.07992 * 119.96568 * 179.72464 * 6 5 4 28 28 H 1.08003 * 120.01953 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.46733 * 299.99290 * 10 9 8 30 30 H 1.08999 * 109.47227 * 59.99724 * 10 9 8 31 31 H 1.08996 * 109.47341 * 300.00037 * 13 11 10 32 32 H 1.09002 * 109.47378 * 60.00044 * 13 11 10 33 33 H 1.08998 * 109.47187 * 60.00182 * 14 13 11 34 34 H 1.08996 * 109.47370 * 179.97438 * 14 13 11 35 35 H 0.96696 * 113.99559 * 180.02562 * 17 15 14 36 36 H 1.09002 * 109.47378 * 60.00230 * 18 15 14 37 37 H 1.08996 * 109.47341 * 180.02562 * 18 15 14 38 38 H 1.08998 * 109.47231 * 300.00186 * 19 11 10 39 39 H 1.09005 * 109.46812 * 60.00071 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.4537 0.0174 -2.2833 6 6 2.9151 -0.6315 -3.4140 7 6 2.8547 -2.0093 -3.4945 8 6 2.3311 -2.7425 -2.4398 9 8 2.2702 -4.0980 -2.5171 10 6 2.7639 -4.7025 -3.7141 11 6 2.6141 -6.2221 -3.6174 12 1 1.5754 -6.4718 -3.4008 13 6 3.0260 -6.8607 -4.9453 14 6 2.8769 -8.3803 -4.8484 15 6 3.7736 -8.9104 -3.7277 16 1 4.8121 -8.6603 -3.9445 17 8 3.6348 -10.3297 -3.6377 18 6 3.3617 -8.2718 -2.3998 19 6 3.5105 -6.7526 -2.4967 20 6 1.8690 -2.0893 -1.3057 21 35 1.1550 -3.0846 0.1350 22 1 -0.3933 0.4416 -0.7651 23 1 1.7923 -0.5138 0.8900 24 1 1.5613 2.4679 1.2084 25 1 3.5345 1.7704 -0.0321 26 1 2.5016 1.0947 -2.2228 27 1 3.3186 -0.0602 -4.2368 28 1 3.2149 -2.5152 -4.3781 29 1 2.1951 -4.3347 -4.5681 30 1 3.8162 -4.4488 -3.8419 31 1 2.3875 -6.4828 -5.7437 32 1 4.0647 -6.6110 -5.1619 33 1 1.8384 -8.6304 -4.6317 34 1 3.1699 -8.8352 -5.7946 35 1 4.1758 -10.7346 -2.9460 36 1 2.3232 -8.5218 -2.1830 37 1 4.0008 -8.6490 -1.6015 38 1 4.5491 -6.5029 -2.7131 39 1 3.2170 -6.2976 -1.5506 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10910592_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:21:00 Heat of formation + Delta-G solvation = -99.251815 kcal Electronic energy + Delta-G solvation = -22126.286731 eV Core-core repulsion = 18660.479894 eV Total energy + Delta-G solvation = -3465.806837 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.050 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.48345 -40.19634 -39.09153 -37.36351 -36.64622 -33.48781 -32.36496 -31.84819 -31.45603 -29.90820 -27.30405 -26.21775 -23.89627 -23.42914 -22.91832 -21.72082 -20.88810 -19.16409 -18.23195 -17.99394 -17.25942 -17.16350 -16.99096 -16.38318 -16.19427 -15.51753 -15.48349 -15.15143 -14.86024 -14.70480 -14.32746 -14.16830 -13.94794 -13.57092 -13.35957 -13.22526 -12.97363 -12.71538 -12.57762 -12.26767 -12.16157 -11.93461 -11.88683 -11.84666 -11.58288 -11.56898 -11.11451 -11.01260 -10.74473 -10.47364 -9.87955 -9.27553 -5.01683 -0.03428 0.21369 0.71663 1.25271 1.65976 1.93862 2.08215 2.48272 3.20488 3.42399 3.62023 3.62261 3.67600 3.72498 3.89520 3.99164 4.07093 4.07936 4.13565 4.25942 4.30839 4.33381 4.34398 4.45555 4.46117 4.51021 4.57913 4.68484 4.79762 4.95482 4.99973 5.04323 5.06710 5.12320 5.14985 5.17494 5.30481 5.31578 5.40940 5.59902 6.24869 6.77639 6.82559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.089 4.089 3 Si 0.797 3.203 4 C -0.066 4.066 5 C -0.148 4.148 6 C -0.052 4.052 7 C -0.202 4.202 8 C 0.143 3.857 9 O -0.317 6.317 10 C 0.058 3.942 11 C -0.083 4.083 12 H 0.070 0.930 13 C -0.101 4.101 14 C -0.114 4.114 15 C 0.102 3.898 16 H 0.065 0.935 17 O -0.591 6.591 18 C -0.148 4.148 19 C -0.108 4.108 20 C -0.133 4.133 21 Br -0.053 7.053 22 H 0.394 0.606 23 H 0.097 0.903 24 H -0.299 1.299 25 H -0.282 1.282 26 H 0.166 0.834 27 H 0.171 0.829 28 H 0.160 0.840 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.393 0.607 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 3.977 -6.518 8.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.198 4.198 3 Si 0.701 3.299 4 C -0.068 4.068 5 C -0.166 4.166 6 C -0.070 4.070 7 C -0.222 4.222 8 C 0.095 3.905 9 O -0.230 6.230 10 C -0.016 4.016 11 C -0.102 4.102 12 H 0.089 0.911 13 C -0.139 4.139 14 C -0.152 4.152 15 C 0.043 3.957 16 H 0.083 0.917 17 O -0.399 6.399 18 C -0.185 4.185 19 C -0.145 4.145 20 C -0.213 4.213 21 Br 0.032 6.968 22 H 0.244 0.756 23 H 0.114 0.886 24 H -0.227 1.227 25 H -0.209 1.209 26 H 0.183 0.817 27 H 0.188 0.812 28 H 0.177 0.823 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.242 0.758 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.960 3.799 -5.366 7.210 hybrid contribution 0.493 -0.911 0.710 1.256 sum 3.453 2.888 -4.656 6.476 Atomic orbital electron populations 1.86550 1.16350 1.82176 1.50062 1.25484 0.86138 1.11813 0.96341 0.93769 0.77696 0.73504 0.84921 1.20289 0.97795 0.91110 0.97624 1.21221 1.01456 1.00797 0.93175 1.21509 0.94168 0.93413 0.97954 1.21636 1.05536 0.95881 0.99097 1.18842 0.94796 0.83541 0.93359 1.86166 1.78798 1.16322 1.41758 1.23133 1.00034 0.93096 0.85333 1.21169 1.00797 0.91671 0.96526 0.91137 1.21423 1.03307 0.93294 0.95831 1.21471 0.99782 0.95680 0.98219 1.21917 0.98961 0.79981 0.94817 0.91721 1.86480 1.71585 1.21036 1.60823 1.22211 1.02102 0.96201 0.98028 1.21455 1.00055 0.94417 0.98598 1.21160 1.11042 0.94326 0.94797 1.96690 1.84513 1.72819 1.42772 0.75641 0.88572 1.22673 1.20865 0.81738 0.81150 0.82281 0.90100 0.90203 0.89628 0.89944 0.92290 0.90940 0.75785 0.92453 0.91009 0.90892 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.18 12.70 -148.98 -1.89 -3.07 16 2 C -0.09 -0.15 2.02 71.24 0.14 -0.01 16 3 Si 0.80 -2.08 29.91 68.60 2.05 -0.03 16 4 C -0.07 -0.10 5.26 -19.86 -0.10 -0.21 16 5 C -0.15 0.64 8.66 22.28 0.19 0.83 16 6 C -0.05 0.31 10.04 22.26 0.22 0.53 16 7 C -0.20 0.59 9.04 22.36 0.20 0.80 16 8 C 0.14 0.46 6.68 22.52 0.15 0.61 16 9 O -0.32 -1.15 9.01 -92.54 -0.83 -1.98 16 10 C 0.06 -0.19 4.12 71.98 0.30 0.11 16 11 C -0.08 0.20 2.43 -10.79 -0.03 0.17 16 12 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 13 C -0.10 0.50 5.20 30.59 0.16 0.66 16 14 C -0.11 0.09 5.57 30.59 0.17 0.26 16 15 C 0.10 -0.02 3.47 30.59 0.11 0.08 16 16 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 17 O -0.59 -1.66 13.32 -148.98 -1.98 -3.64 16 18 C -0.15 0.04 5.54 30.58 0.17 0.21 16 19 C -0.11 0.09 5.10 30.58 0.16 0.25 16 20 C -0.13 -0.77 6.23 22.40 0.14 -0.63 16 21 Br -0.05 -0.49 31.44 -20.37 -0.64 -1.13 16 22 H 0.39 -2.66 8.70 -74.06 -0.64 -3.31 16 23 H 0.10 0.54 7.22 -2.39 -0.02 0.53 16 24 H -0.30 -1.55 7.11 99.48 0.71 -0.85 16 25 H -0.28 -0.51 7.11 99.48 0.71 0.19 16 26 H 0.17 -1.74 5.12 -2.91 -0.01 -1.75 16 27 H 0.17 -2.16 8.06 -2.91 -0.02 -2.18 16 28 H 0.16 -1.27 6.30 -2.91 -0.02 -1.29 16 29 H 0.08 -0.50 7.66 -2.39 -0.02 -0.52 16 30 H 0.08 -0.49 7.66 -2.39 -0.02 -0.51 16 31 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.39 -1.89 9.08 -74.06 -0.67 -2.56 16 36 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.07 -0.20 8.14 -2.39 -0.02 -0.21 16 39 H 0.06 0.18 7.82 -2.38 -0.02 0.16 16 Total: 0.00 -18.26 330.86 -1.53 -19.79 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: -0.21 Total: -13.59 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 1.98 Total: 3.67 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -4.71 Total: -8.70 kcal Atomic # 14 Polarization: -2.08 SS G_CDS: 2.05 Total: -0.03 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -0.64 Total: -1.13 kcal Total: -18.26 -1.53 -19.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.465 kcal (2) G-P(sol) polarization free energy of solvation -18.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds