Wall clock time and date at job start Mon Mar 8 2021 07:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.53004 * 109.47215 * 240.00405 * 2 1 3 5 5 Si 1.86295 * 109.47179 * 120.00097 * 2 1 3 6 6 C 1.86297 * 109.47300 * 300.00081 * 5 2 1 7 7 C 1.86302 * 109.47237 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.46953 * 60.00083 * 5 2 1 9 9 C 1.42907 * 114.00047 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.47325 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.46429 * 65.00746 * 10 9 8 12 12 C 1.42899 * 113.99649 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47405 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46726 * 64.99720 * 13 12 11 15 15 C 1.35925 * 116.99722 * 180.02562 * 14 13 12 16 16 C 1.38677 * 120.05563 * 0.02562 * 15 14 13 17 17 C 1.38194 * 119.94757 * 179.97438 * 16 15 14 18 18 C 1.38235 * 120.07709 * 359.96930 * 17 16 15 19 19 C 1.38291 * 120.11156 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.97527 * 179.97438 * 19 18 17 21 21 O 1.42902 * 109.47306 * 255.00622 * 20 19 18 22 22 Si 1.86306 * 109.46824 * 15.00365 * 20 19 18 23 23 H 1.48494 * 109.47197 * 59.99897 * 22 20 19 24 24 H 1.48499 * 109.46799 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47098 * 299.99538 * 22 20 19 26 26 C 1.38191 * 120.05286 * 359.79052 * 19 18 17 27 27 Br 1.89100 * 120.04052 * 180.25003 * 26 19 18 28 28 H 1.08999 * 109.47148 * 299.99729 * 1 2 3 29 29 H 1.09002 * 109.46857 * 60.00007 * 1 2 3 30 30 H 1.08997 * 109.46473 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47060 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47294 * 300.00259 * 3 2 1 33 33 H 1.09007 * 109.46816 * 59.99822 * 3 2 1 34 34 H 1.08998 * 109.46969 * 299.99762 * 4 2 1 35 35 H 1.09003 * 109.47109 * 59.99703 * 4 2 1 36 36 H 1.09005 * 109.46879 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47546 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47531 * 300.00429 * 6 5 2 39 39 H 1.09001 * 109.47051 * 59.99769 * 6 5 2 40 40 H 1.08999 * 109.46826 * 300.00012 * 7 5 2 41 41 H 1.08998 * 109.47222 * 59.99880 * 7 5 2 42 42 H 1.08994 * 109.47395 * 180.02562 * 7 5 2 43 43 H 1.09005 * 109.46610 * 60.00621 * 9 8 5 44 44 H 1.08995 * 109.47386 * 300.00783 * 9 8 5 45 45 H 1.08990 * 109.47090 * 305.00772 * 10 9 8 46 46 H 1.08992 * 109.46809 * 185.00065 * 10 9 8 47 47 H 1.09002 * 109.47445 * 59.99875 * 12 11 10 48 48 H 1.09002 * 109.47167 * 299.99793 * 12 11 10 49 49 H 1.09002 * 109.47398 * 184.99964 * 13 12 11 50 50 H 1.09001 * 109.47194 * 305.00145 * 13 12 11 51 51 H 1.07994 * 120.02801 * 359.97438 * 16 15 14 52 52 H 1.08005 * 119.95649 * 180.02562 * 17 16 15 53 53 H 1.07993 * 119.94653 * 180.02562 * 18 17 16 54 54 H 1.08995 * 109.47442 * 135.00111 * 20 19 18 55 55 H 0.96696 * 113.99992 * 59.99638 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8776 1.5215 8 8 1.6074 -2.4159 1.5210 9 6 2.0295 -3.1817 2.6513 10 6 1.4636 -4.5994 2.5470 11 8 2.0313 -5.2564 1.4120 12 6 1.5663 -6.5942 1.2221 13 6 2.2359 -7.1963 -0.0148 14 8 3.6416 -7.3135 0.2142 15 6 4.3898 -7.8340 -0.7942 16 6 3.7837 -8.2231 -1.9792 17 6 4.5465 -8.7515 -3.0032 18 6 5.9129 -8.8920 -2.8478 19 6 6.5203 -8.5047 -1.6673 20 6 8.0101 -8.6597 -1.5009 21 8 8.2806 -9.7703 -0.6432 22 14 8.7933 -8.9552 -3.1653 23 1 8.5122 -7.8012 -4.0565 24 1 10.2614 -9.1073 -3.0014 25 1 8.2309 -10.1921 -3.7645 26 6 5.7628 -7.9722 -0.6415 27 35 6.5946 -7.4362 0.9699 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1301 -0.7207 -1.2495 37 1 1.8930 -0.5142 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1502 1.5217 42 1 4.3774 -1.3918 2.4112 43 1 1.6653 -2.7119 3.5649 44 1 3.1184 -3.2255 2.6744 45 1 0.3806 -4.5509 2.4347 46 1 1.7108 -5.1566 3.4505 47 1 0.4853 -6.5868 1.0822 48 1 1.8151 -7.1931 2.0982 49 1 1.8163 -8.1829 -0.2113 50 1 2.0606 -6.5491 -0.8742 51 1 2.7163 -8.1133 -2.1018 52 1 4.0747 -9.0543 -3.9264 53 1 6.5071 -9.3048 -3.6495 54 1 8.4230 -7.7519 -1.0611 55 1 7.9410 -10.6136 -0.9728 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10910592_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:29:24 Heat of formation + Delta-G solvation = -177.613137 kcal Electronic energy + Delta-G solvation = -32495.808187 eV Core-core repulsion = 28089.327718 eV Total energy + Delta-G solvation = -4406.480469 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 434.113 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.40457 -39.57863 -38.89222 -37.50099 -37.14398 -36.82938 -33.50036 -32.44257 -31.45377 -30.12025 -29.52008 -29.15443 -29.06829 -27.84226 -27.38816 -26.94109 -24.21816 -23.57747 -23.45136 -21.97124 -20.42014 -19.30791 -18.17865 -18.12654 -17.93477 -17.35170 -17.11814 -16.70404 -16.35691 -16.20452 -16.07851 -15.74540 -15.57755 -15.39228 -14.96066 -14.85463 -14.79809 -14.62849 -14.40622 -14.14310 -13.96866 -13.77410 -13.54313 -13.39377 -13.28912 -13.19490 -12.97503 -12.95900 -12.93122 -12.81549 -12.55558 -12.41551 -12.32069 -12.22181 -12.01667 -11.89044 -11.82803 -11.77342 -11.68223 -11.60481 -11.49760 -11.19538 -10.95093 -10.55638 -10.43888 -10.30861 -10.05388 -9.87548 -9.27831 -0.03899 0.19432 0.74005 1.11743 1.44370 1.53651 1.54923 1.79724 1.89740 2.09078 2.12771 2.46459 2.49161 2.69630 3.43148 3.63223 3.76020 3.96059 4.00068 4.02222 4.10717 4.11679 4.12260 4.14909 4.22893 4.32637 4.33783 4.42289 4.44599 4.48803 4.52075 4.58946 4.66521 4.70377 4.73030 4.73505 4.77750 4.78656 4.81221 4.83080 4.83218 4.97224 4.99324 5.08490 5.09094 5.12823 5.19724 5.28782 5.33026 5.40297 5.43464 5.52251 5.56055 5.58030 5.63109 6.20759 6.31453 6.71551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.380 4.380 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.311 2.689 6 C -0.513 4.513 7 C -0.521 4.521 8 O -0.634 6.634 9 C 0.075 3.925 10 C 0.055 3.945 11 O -0.399 6.399 12 C 0.059 3.941 13 C 0.053 3.947 14 O -0.312 6.312 15 C 0.144 3.856 16 C -0.203 4.203 17 C -0.053 4.053 18 C -0.167 4.167 19 C -0.062 4.062 20 C -0.096 4.096 21 O -0.540 6.540 22 Si 0.994 3.006 23 H -0.256 1.256 24 H -0.273 1.273 25 H -0.232 1.232 26 C -0.129 4.129 27 Br -0.046 7.046 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.076 0.924 51 H 0.160 0.840 52 H 0.166 0.834 53 H 0.151 0.849 54 H 0.110 0.890 55 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 -1.967 -1.709 5.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.423 4.423 3 C -0.198 4.198 4 C -0.192 4.192 5 Si 1.441 2.559 6 C -0.615 4.615 7 C -0.621 4.621 8 O -0.593 6.593 9 C 0.000 4.000 10 C -0.022 4.022 11 O -0.318 6.318 12 C -0.017 4.017 13 C -0.021 4.021 14 O -0.226 6.226 15 C 0.096 3.904 16 C -0.222 4.222 17 C -0.071 4.071 18 C -0.186 4.186 19 C -0.065 4.065 20 C -0.205 4.205 21 O -0.347 6.347 22 Si 0.816 3.184 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.155 1.155 26 C -0.209 4.209 27 Br 0.040 6.960 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.095 0.905 51 H 0.178 0.822 52 H 0.184 0.816 53 H 0.168 0.832 54 H 0.128 0.872 55 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.598 -1.473 -1.607 4.207 hybrid contribution -0.603 0.083 0.066 0.612 sum -4.201 -1.390 -1.541 4.685 Atomic orbital electron populations 1.21523 0.93934 1.01762 1.01968 1.25870 1.00628 1.02928 1.12860 1.21602 1.01109 0.94676 1.02365 1.21513 1.00679 0.99932 0.97086 0.76291 0.61953 0.53071 0.64591 1.27031 1.07056 1.09749 1.17712 1.27173 1.26310 1.04612 1.04027 1.85380 1.79154 1.46460 1.48348 1.22290 0.99169 0.90824 0.87727 1.22807 0.98436 0.92008 0.88907 1.87997 1.68571 1.26750 1.48522 1.22679 0.98487 0.83405 0.97177 1.23199 0.77655 1.01977 0.99299 1.86241 1.21222 1.77156 1.37937 1.18880 0.89772 0.93049 0.88682 1.21609 1.02296 1.05446 0.92877 1.21433 0.93039 0.93624 0.99033 1.21294 0.96343 1.03938 0.97019 1.20255 0.96789 0.96671 0.92751 1.25331 0.92800 0.93968 1.08432 1.86565 1.80694 1.18071 1.49343 0.85075 0.78521 0.81813 0.72996 1.17993 1.19853 1.15510 1.21136 0.92495 1.11792 0.95477 1.96681 1.80028 1.90134 1.29163 0.91843 0.93248 0.92589 0.92160 0.92980 0.91571 0.92832 0.93123 0.92705 0.90885 0.90343 0.90729 0.92005 0.90430 0.91477 0.88884 0.92238 0.91391 0.90571 0.88696 0.91917 0.87790 0.90537 0.82246 0.81639 0.83211 0.87180 0.76313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.15 7.85 71.98 0.56 0.42 16 2 C -0.38 -0.43 0.53 -10.79 -0.01 -0.44 16 3 C -0.14 0.00 7.85 71.98 0.56 0.56 16 4 C -0.13 -0.41 7.85 71.98 0.56 0.16 16 5 Si 1.31 -0.31 8.45 68.60 0.58 0.27 16 6 C -0.51 0.81 8.50 113.37 0.96 1.77 16 7 C -0.52 -1.07 8.50 113.37 0.96 -0.11 16 8 O -0.63 -1.86 8.52 -144.35 -1.23 -3.09 16 9 C 0.08 0.01 5.50 71.98 0.40 0.41 16 10 C 0.05 -0.01 6.32 71.98 0.45 0.45 16 11 O -0.40 -1.93 10.27 -135.05 -1.39 -3.32 16 12 C 0.06 -0.07 6.32 71.98 0.45 0.38 16 13 C 0.05 -0.06 5.12 71.98 0.37 0.31 16 14 O -0.31 -1.93 9.44 -88.07 -0.83 -2.77 16 15 C 0.14 0.79 6.68 22.52 0.15 0.94 16 16 C -0.20 0.09 9.04 22.36 0.20 0.29 16 17 C -0.05 0.15 10.04 22.26 0.22 0.37 16 18 C -0.17 0.13 8.66 22.28 0.19 0.33 16 19 C -0.06 -0.21 5.26 -19.86 -0.10 -0.32 16 20 C -0.10 -0.21 2.02 71.24 0.14 -0.07 16 21 O -0.54 -1.51 12.71 -148.98 -1.89 -3.40 16 22 Si 0.99 -1.15 25.49 68.60 1.75 0.60 16 23 H -0.26 -0.03 7.11 99.48 0.71 0.67 16 24 H -0.27 -0.69 7.11 99.48 0.71 0.02 16 25 H -0.23 0.95 6.73 99.48 0.67 1.62 16 26 C -0.13 -0.95 6.23 22.40 0.14 -0.81 16 27 Br -0.05 -0.44 31.44 -20.37 -0.64 -1.09 16 28 H 0.06 -0.06 7.79 -2.39 -0.02 -0.07 16 29 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 0.10 7.97 -2.39 -0.02 0.08 16 31 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 32 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 -0.13 7.79 -2.38 -0.02 -0.15 16 34 H 0.05 0.23 7.96 -2.39 -0.02 0.21 16 35 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.05 0.14 7.79 -2.38 -0.02 0.13 16 37 H 0.07 -0.20 7.48 -2.39 -0.02 -0.21 16 38 H 0.08 -0.17 7.79 -2.39 -0.02 -0.18 16 39 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 40 H 0.06 0.27 7.79 -2.39 -0.02 0.25 16 41 H 0.08 0.05 7.79 -2.39 -0.02 0.03 16 42 H 0.07 0.12 7.48 -2.39 -0.02 0.10 16 43 H 0.09 -0.49 7.21 -2.38 -0.02 -0.51 16 44 H 0.06 0.04 7.21 -2.39 -0.02 0.03 16 45 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.10 -0.58 8.14 -2.39 -0.02 -0.59 16 48 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 49 H 0.10 -0.69 7.66 -2.39 -0.02 -0.70 16 50 H 0.08 -0.12 7.66 -2.39 -0.02 -0.14 16 51 H 0.16 -0.91 6.30 -2.91 -0.02 -0.93 16 52 H 0.17 -1.51 8.06 -2.91 -0.02 -1.53 16 53 H 0.15 -0.74 4.88 -2.91 -0.01 -0.76 16 54 H 0.11 0.43 7.21 -2.39 -0.02 0.42 16 55 H 0.39 -1.81 8.70 -74.06 -0.64 -2.45 16 Total: 0.00 -16.95 454.65 3.52 -13.43 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: 0.94 Total: -5.28 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.24 Total: 4.64 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -5.34 Total: -12.58 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.33 Total: 0.87 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -0.64 Total: -1.09 kcal Total: -16.95 3.52 -13.43 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.184 kcal (2) G-P(sol) polarization free energy of solvation -16.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds