Wall clock time and date at job start Mon Mar 8 2021 07:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 114.00029 * 2 1 4 4 C 1.52998 * 112.84999 * 294.12515 * 3 2 1 5 5 F 1.39902 * 109.47123 * 195.75395 * 4 3 2 6 6 F 1.39897 * 109.47228 * 315.74743 * 4 3 2 7 7 F 1.39901 * 109.47216 * 75.75229 * 4 3 2 8 8 C 1.53787 * 113.61135 * 162.82163 * 3 2 1 9 9 C 1.53781 * 87.07897 * 270.88092 * 8 3 2 10 10 H 1.09004 * 113.61609 * 220.02137 * 9 8 3 11 11 C 1.52997 * 113.61377 * 89.11800 * 9 8 3 12 12 O 1.42906 * 109.47072 * 87.50333 * 11 9 8 13 13 C 1.35920 * 116.99561 * 180.02562 * 12 11 9 14 14 C 1.38791 * 120.05157 * 179.72326 * 13 12 11 15 15 Br 1.89095 * 120.03969 * 0.02562 * 14 13 12 16 16 C 1.38244 * 119.92336 * 179.72741 * 14 13 12 17 17 C 1.50699 * 119.97468 * 180.27473 * 16 14 13 18 18 O 1.42901 * 109.46926 * 285.29129 * 17 16 14 19 19 Si 1.86305 * 109.47071 * 165.29327 * 17 16 14 20 20 C 1.38237 * 120.04602 * 0.56525 * 16 14 13 21 21 C 1.38286 * 120.11895 * 359.70796 * 20 16 14 22 22 C 1.38147 * 120.06747 * 359.97438 * 21 20 16 23 23 C 1.53776 * 87.08449 * 334.56825 * 9 8 3 24 24 H 1.09007 * 109.46849 * 63.09195 * 1 2 3 25 25 H 1.09001 * 109.47573 * 183.09139 * 1 2 3 26 26 H 1.09004 * 109.47189 * 303.09565 * 1 2 3 27 27 H 1.09000 * 113.61240 * 156.33529 * 8 3 2 28 28 H 1.08995 * 113.61814 * 25.43241 * 8 3 2 29 29 H 1.09003 * 109.47174 * 207.49805 * 11 9 8 30 30 H 1.08998 * 109.47335 * 327.50323 * 11 9 8 31 31 H 1.08997 * 109.47505 * 45.29685 * 17 16 14 32 32 H 0.96699 * 113.99948 * 299.99682 * 18 17 16 33 33 H 1.48493 * 110.00280 * 179.97438 * 19 17 16 34 34 H 1.48499 * 110.00177 * 301.31847 * 19 17 16 35 35 H 1.08003 * 119.94319 * 179.72924 * 20 16 14 36 36 H 1.07999 * 119.96506 * 180.02562 * 21 20 16 37 37 H 1.08003 * 120.02013 * 180.02562 * 22 21 20 38 38 H 1.08998 * 113.61812 * 139.98059 * 23 9 8 39 39 H 1.09003 * 113.61809 * 270.88274 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7254 2.0825 -1.2868 5 9 2.5971 3.1732 -1.3755 6 9 1.9149 1.2434 -2.3900 7 9 0.4040 2.5417 -1.2715 8 6 3.4906 1.3205 0.4162 9 6 3.0003 1.4808 1.8649 10 1 3.5980 2.1766 2.4537 11 6 2.7579 0.1504 2.5806 12 8 3.9738 -0.2930 3.1866 13 6 3.9310 -1.4688 3.8671 14 6 5.0768 -1.9618 4.4755 15 35 6.6996 -0.9980 4.3595 16 6 5.0290 -3.1551 5.1718 17 6 6.2710 -3.6884 5.8381 18 8 7.1520 -4.2210 4.8470 19 14 5.8026 -5.0329 7.0397 20 6 3.8441 -3.8626 5.2520 21 6 2.7026 -3.3759 4.6417 22 6 2.7434 -2.1806 3.9503 23 6 1.7234 2.1074 1.2804 24 1 -0.3633 0.4651 -0.9165 25 1 -0.3634 -1.0261 0.0554 26 1 -0.3634 0.5612 0.8610 27 1 4.0402 2.1847 0.0431 28 1 4.0058 0.3780 0.2313 29 1 1.9968 0.2848 3.3492 30 1 2.4189 -0.5935 1.8596 31 1 6.7715 -2.8813 6.3731 32 1 6.7717 -4.9451 4.3311 33 1 7.0188 -5.5676 7.7031 34 1 4.8615 -4.4996 8.0571 35 1 3.8097 -4.7969 5.7927 36 1 1.7781 -3.9305 4.7064 37 1 1.8513 -1.8011 3.4742 38 1 0.8120 1.8001 1.7931 39 1 1.7899 3.1868 1.1436 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10910592_17321602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:39:27 Heat of formation + Delta-G solvation = -187.719426 kcal Electronic energy + Delta-G solvation = -29931.705210 eV Core-core repulsion = 25053.700203 eV Total energy + Delta-G solvation = -4878.005007 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.022 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.26927 -48.80451 -48.74077 -41.78996 -40.99993 -39.13385 -37.38308 -36.92523 -33.45391 -32.05250 -30.76414 -29.75184 -28.18192 -27.55138 -26.76490 -26.58586 -23.62191 -23.45043 -22.24875 -20.57735 -19.85019 -19.56313 -19.25939 -19.07585 -17.92752 -17.33531 -17.23601 -17.01279 -16.86775 -16.46282 -16.21931 -15.80285 -15.66566 -15.59388 -15.50198 -15.20090 -15.14089 -14.94765 -14.89816 -14.70962 -14.43734 -14.20053 -14.13278 -13.83450 -13.39742 -13.19202 -12.99695 -12.83866 -12.63836 -12.37975 -12.25030 -11.99901 -11.83117 -11.80450 -11.75137 -11.59900 -10.98897 -10.81335 -10.45644 -9.85911 -9.25840 -5.00148 -0.01528 0.23024 0.73677 1.26766 1.52162 1.67237 1.91516 2.03385 2.09321 2.50063 2.55245 2.61523 2.88397 3.29760 3.34803 3.42554 3.51292 3.63974 3.70516 3.92621 4.01391 4.10415 4.25282 4.26604 4.29346 4.32957 4.38120 4.46632 4.47912 4.50447 4.64783 4.69571 4.70885 4.80585 4.82920 5.00245 5.02917 5.18084 5.33051 5.60598 5.71438 6.24373 6.79230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.344 6.344 3 C 0.039 3.961 4 C 0.432 3.568 5 F -0.178 7.178 6 F -0.188 7.188 7 F -0.184 7.184 8 C -0.116 4.116 9 C -0.094 4.094 10 H 0.109 0.891 11 C 0.066 3.934 12 O -0.316 6.316 13 C 0.144 3.856 14 C -0.132 4.132 15 Br -0.051 7.051 16 C -0.066 4.066 17 C -0.088 4.088 18 O -0.544 6.544 19 Si 0.795 3.205 20 C -0.148 4.148 21 C -0.053 4.053 22 C -0.201 4.201 23 C -0.131 4.131 24 H 0.042 0.958 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.394 0.606 33 H -0.299 1.299 34 H -0.282 1.282 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.158 0.842 38 H 0.111 0.889 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.235 -3.279 1.669 8.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.262 6.262 3 C -0.003 4.003 4 C 0.377 3.623 5 F -0.159 7.159 6 F -0.170 7.170 7 F -0.165 7.165 8 C -0.153 4.153 9 C -0.113 4.113 10 H 0.127 0.873 11 C -0.008 4.008 12 O -0.229 6.229 13 C 0.096 3.904 14 C -0.212 4.212 15 Br 0.034 6.966 16 C -0.068 4.068 17 C -0.197 4.197 18 O -0.351 6.351 19 Si 0.699 3.301 20 C -0.166 4.166 21 C -0.071 4.071 22 C -0.220 4.220 23 C -0.168 4.168 24 H 0.061 0.939 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.138 0.862 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.243 0.757 33 H -0.227 1.227 34 H -0.208 1.208 35 H 0.182 0.818 36 H 0.188 0.812 37 H 0.175 0.825 38 H 0.129 0.871 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.975 -2.722 2.593 7.059 hybrid contribution -0.364 1.078 -0.764 1.371 sum -6.339 -1.644 1.828 6.799 Atomic orbital electron populations 1.23317 0.78595 1.05503 1.01801 1.88075 1.22163 1.22101 1.93823 1.24132 1.00253 0.86405 0.89531 1.21556 0.74142 0.78716 0.87882 1.93172 1.69594 1.56530 1.96645 1.93187 1.94850 1.71389 1.57558 1.93182 1.36658 1.89807 1.96853 1.23312 0.90793 1.05458 0.95721 1.22021 0.97957 0.96307 0.94968 0.87329 1.22944 0.84801 0.95984 0.97046 1.86130 1.37023 1.34648 1.65105 1.18799 0.93281 0.86414 0.91913 1.21148 0.91437 0.99436 1.09191 1.96691 1.28260 1.73928 1.97713 1.20284 0.97204 0.92787 0.96549 1.25472 0.90336 1.05659 0.98244 1.86553 1.40897 1.55682 1.51992 0.93772 0.78294 0.81007 0.76984 1.21219 0.91420 1.01201 1.02782 1.21498 0.99477 0.93877 0.92219 1.21611 0.96917 0.98040 1.05462 1.23614 0.99745 1.01376 0.92114 0.93948 0.86571 0.90901 0.86168 0.89402 0.89742 0.89555 0.88484 0.75657 1.22696 1.20819 0.81769 0.81200 0.82480 0.87067 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 10.33 113.37 1.17 1.15 16 2 O -0.34 0.55 8.36 -148.98 -1.25 -0.69 16 3 C 0.04 -0.08 0.84 -10.27 -0.01 -0.09 16 4 C 0.43 0.83 2.52 71.98 0.18 1.01 16 5 F -0.18 -0.45 15.82 44.97 0.71 0.26 16 6 F -0.19 -1.16 17.11 44.97 0.77 -0.39 16 7 F -0.18 -0.37 15.34 44.97 0.69 0.32 16 8 C -0.12 0.26 6.89 31.12 0.21 0.47 16 9 C -0.09 0.43 4.20 -10.27 -0.04 0.39 16 10 H 0.11 -0.50 8.14 -2.38 -0.02 -0.52 16 11 C 0.07 -0.24 4.32 71.98 0.31 0.07 16 12 O -0.32 -0.94 9.47 -92.65 -0.88 -1.82 16 13 C 0.14 0.42 6.68 22.51 0.15 0.57 16 14 C -0.13 -0.71 6.23 22.40 0.14 -0.57 16 15 Br -0.05 -0.44 31.43 -20.37 -0.64 -1.08 16 16 C -0.07 -0.08 5.26 -19.86 -0.10 -0.19 16 17 C -0.09 -0.12 2.02 71.24 0.14 0.02 16 18 O -0.54 -1.06 12.68 -148.98 -1.89 -2.95 16 19 Si 0.80 -2.20 29.91 68.60 2.05 -0.15 16 20 C -0.15 0.66 8.66 22.28 0.19 0.85 16 21 C -0.05 0.32 10.04 22.26 0.22 0.54 16 22 C -0.20 0.59 9.04 22.36 0.20 0.80 16 23 C -0.13 0.90 6.52 31.12 0.20 1.10 16 24 H 0.04 -0.13 6.56 -2.38 -0.02 -0.15 16 25 H 0.12 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H 0.07 -0.69 6.60 -2.38 -0.02 -0.71 16 27 H 0.12 -0.40 7.03 -2.39 -0.02 -0.41 16 28 H 0.09 0.02 8.10 -2.39 -0.02 0.00 16 29 H 0.08 -0.60 7.66 -2.39 -0.02 -0.61 16 30 H 0.09 -0.31 5.64 -2.39 -0.01 -0.32 16 31 H 0.10 0.51 7.24 -2.39 -0.02 0.49 16 32 H 0.39 -2.70 8.70 -74.06 -0.64 -3.34 16 33 H -0.30 -1.52 7.11 99.48 0.71 -0.81 16 34 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 35 H 0.17 -1.75 5.12 -2.91 -0.01 -1.77 16 36 H 0.17 -2.16 8.06 -2.91 -0.02 -2.18 16 37 H 0.16 -1.20 6.30 -2.91 -0.02 -1.22 16 38 H 0.11 -1.12 6.64 -2.39 -0.02 -1.13 16 39 H 0.12 -0.98 8.04 -2.39 -0.02 -1.00 16 Total: 0.00 -17.93 345.85 3.07 -14.86 By element: Atomic # 1 Polarization: -15.02 SS G_CDS: 0.52 Total: -14.49 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 2.98 Total: 6.13 kcal Atomic # 8 Polarization: -1.44 SS G_CDS: -4.01 Total: -5.46 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 2.17 Total: 0.19 kcal Atomic # 14 Polarization: -2.20 SS G_CDS: 2.05 Total: -0.15 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -0.64 Total: -1.08 kcal Total: -17.93 3.07 -14.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_17321602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.857 kcal (2) G-P(sol) polarization free energy of solvation -17.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds