Wall clock time and date at job start Mon Mar 8 2021 08:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35925 * 116.99722 * 180.02562 * 12 11 10 14 14 C 1.38677 * 120.05563 * 0.02562 * 13 12 11 15 15 C 1.38194 * 119.94757 * 179.97438 * 14 13 12 16 16 C 1.38235 * 120.07709 * 359.96930 * 15 14 13 17 17 C 1.38291 * 120.11156 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.97527 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47306 * 255.00622 * 18 17 16 20 20 Si 1.86306 * 109.46824 * 15.00365 * 18 17 16 21 21 H 1.48502 * 109.47098 * 299.99538 * 20 18 17 22 22 H 1.48494 * 109.47197 * 59.99897 * 20 18 17 23 23 H 1.48499 * 109.46799 * 179.97438 * 20 18 17 24 24 C 1.38191 * 120.05286 * 359.79052 * 17 16 15 25 25 Br 1.89100 * 120.04052 * 180.25003 * 24 17 16 26 26 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 27 27 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 28 28 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 31 31 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 32 32 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 33 33 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 34 34 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 36 36 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 37 37 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 38 38 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 39 39 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 40 40 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 41 41 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 42 42 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 43 43 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 44 44 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 45 45 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 46 46 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 47 47 H 1.07994 * 120.02844 * 359.95262 * 14 13 12 48 48 H 1.08005 * 119.95649 * 180.02562 * 15 14 13 49 49 H 1.07993 * 119.94653 * 180.02562 * 16 15 14 50 50 H 1.08995 * 109.47442 * 135.00111 * 18 17 16 51 51 H 0.96698 * 114.00034 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6978 -7.6068 4.6627 14 6 2.4928 -7.1878 5.7190 15 6 2.8059 -8.0673 6.7379 16 6 2.3270 -9.3636 6.7058 17 6 1.5339 -9.7844 5.6539 18 6 1.0140 -11.1985 5.6216 19 8 1.7508 -11.9551 4.6589 20 14 1.2142 -11.9722 7.3046 21 1 2.6516 -11.9817 7.6772 22 1 0.4486 -11.1860 8.3051 23 1 0.7013 -13.3654 7.2730 24 6 1.2147 -8.9080 4.6342 25 35 0.1243 -9.4817 3.1997 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7209 -1.2494 35 1 1.8938 -0.5134 3.9323 36 1 1.8934 1.0279 3.0423 37 1 0.4400 0.0002 3.0423 38 1 4.3777 -1.3911 0.6315 39 1 4.3770 0.1503 1.5217 40 1 4.3774 -1.3909 2.4118 41 1 1.6655 -2.7116 3.5652 42 1 3.1185 -3.2254 2.6746 43 1 1.8274 -5.0693 1.6337 44 1 0.3749 -4.5551 2.5246 45 1 3.0051 -5.4633 3.7796 46 1 1.5528 -4.9492 4.6711 47 1 2.8673 -6.1752 5.7450 48 1 3.4247 -7.7410 7.5608 49 1 2.5726 -10.0490 7.5034 50 1 -0.0411 -11.1916 5.3481 51 1 1.4690 -12.8771 4.5840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_10910592_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:08:10 Heat of formation + Delta-G solvation = -146.099964 kcal Electronic energy + Delta-G solvation = -27569.303314 eV Core-core repulsion = 23638.409170 eV Total energy + Delta-G solvation = -3930.894144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 404.098 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39344 -39.33250 -38.25508 -37.31952 -36.86537 -33.84811 -33.31002 -31.80548 -29.93655 -29.47770 -29.13519 -27.89717 -27.41820 -27.33915 -26.27187 -23.59193 -23.02893 -21.82935 -20.45251 -19.01040 -18.50296 -17.95280 -17.57499 -17.52610 -17.05559 -16.25634 -16.05477 -15.93050 -15.66040 -15.33791 -14.91660 -14.90327 -14.74060 -14.51610 -14.43230 -14.20405 -14.00673 -13.69564 -13.53713 -13.49350 -13.31949 -13.16846 -13.08448 -12.96398 -12.95510 -12.72888 -12.44000 -12.40016 -12.18237 -11.99881 -11.97140 -11.75872 -11.74110 -11.73158 -11.64274 -11.46120 -11.38305 -10.90447 -10.42016 -10.31801 -10.11093 -9.83430 -9.23835 -0.02364 0.21059 0.82867 1.06421 1.30115 1.40590 1.46210 1.69086 1.84594 1.99986 2.03367 2.42311 2.44945 3.30451 3.65754 3.74882 3.75851 3.92349 3.94712 3.97412 4.05601 4.08978 4.09604 4.16003 4.16730 4.23058 4.29955 4.44216 4.47718 4.61221 4.61990 4.65336 4.67046 4.67731 4.78248 4.83103 4.93107 4.96712 4.97379 5.01149 5.08041 5.08174 5.11545 5.17336 5.28256 5.31142 5.38599 5.38668 5.47749 5.49583 5.50940 5.55228 6.20734 6.58125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.288 2.712 6 C -0.511 4.511 7 C -0.511 4.511 8 O -0.623 6.623 9 C 0.090 3.910 10 C -0.123 4.123 11 C 0.056 3.944 12 O -0.297 6.297 13 C 0.159 3.841 14 C -0.201 4.201 15 C -0.057 4.057 16 C -0.158 4.158 17 C -0.009 4.009 18 C -0.090 4.090 19 O -0.534 6.534 20 Si 0.949 3.051 21 H -0.246 1.246 22 H -0.247 1.247 23 H -0.253 1.253 24 C -0.103 4.103 25 Br -0.024 7.024 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.133 0.867 50 H 0.083 0.917 51 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.079 1.159 3.311 3.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.419 4.419 3 C -0.194 4.194 4 C -0.192 4.192 5 Si 1.419 2.581 6 C -0.613 4.613 7 C -0.613 4.613 8 O -0.582 6.582 9 C 0.015 3.985 10 C -0.161 4.161 11 C -0.019 4.019 12 O -0.210 6.210 13 C 0.111 3.889 14 C -0.221 4.221 15 C -0.076 4.076 16 C -0.176 4.176 17 C -0.011 4.011 18 C -0.201 4.201 19 O -0.339 6.339 20 Si 0.771 3.229 21 H -0.169 1.169 22 H -0.170 1.170 23 H -0.176 1.176 24 C -0.183 4.183 25 Br 0.061 6.939 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.157 0.843 48 H 0.155 0.845 49 H 0.151 0.849 50 H 0.100 0.900 51 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.788 0.938 3.175 3.403 hybrid contribution 0.340 0.514 0.185 0.643 sum 1.128 1.451 3.360 3.830 Atomic orbital electron populations 1.21514 0.93779 1.02053 1.01801 1.25786 1.00724 1.02632 1.12719 1.21557 1.00766 0.94901 1.02164 1.21515 1.00596 1.00286 0.96759 0.76703 0.63009 0.53334 0.65032 1.27036 1.07063 1.09520 1.17690 1.27038 1.25040 1.04778 1.04468 1.85334 1.79297 1.46057 1.47501 1.21791 0.98083 0.91494 0.87178 1.21514 1.03495 0.93096 0.97966 1.22787 0.98752 0.80613 0.99743 1.86181 1.70310 1.21803 1.42658 1.18564 0.93508 0.88871 0.88000 1.21301 1.03365 1.01724 0.95671 1.21018 0.96706 0.92443 0.97402 1.21010 1.00082 0.97347 0.99211 1.19009 0.95899 0.93365 0.92861 1.24842 0.98310 0.91912 1.04999 1.86534 1.60616 1.26226 1.60567 0.85717 0.81731 0.80191 0.75278 1.16924 1.17004 1.17641 1.20918 1.06427 0.93404 0.97594 1.96713 1.64662 1.89967 1.42532 0.92710 0.92769 0.92120 0.92517 0.92483 0.92518 0.92113 0.92774 0.92702 0.91517 0.90676 0.90820 0.90812 0.90675 0.91514 0.92392 0.92377 0.89452 0.89457 0.91380 0.91376 0.84327 0.84522 0.84936 0.89961 0.77115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.00 7.85 37.16 0.29 0.29 16 2 C -0.38 0.15 0.53 -90.62 -0.05 0.11 16 3 C -0.14 0.10 7.85 37.16 0.29 0.40 16 4 C -0.13 -0.01 7.85 37.16 0.29 0.28 16 5 Si 1.29 -1.80 8.45 -169.99 -1.44 -3.24 16 6 C -0.51 0.60 8.50 101.05 0.86 1.46 16 7 C -0.51 0.58 8.50 101.05 0.86 1.44 16 8 O -0.62 0.06 8.56 -35.23 -0.30 -0.24 16 9 C 0.09 -0.15 5.12 37.16 0.19 0.04 16 10 C -0.12 0.11 5.95 -26.73 -0.16 -0.05 16 11 C 0.06 -0.07 4.74 37.16 0.18 0.11 16 12 O -0.30 -0.61 9.47 -19.51 -0.18 -0.79 16 13 C 0.16 0.37 6.68 -39.20 -0.26 0.10 16 14 C -0.20 -0.03 9.04 -39.44 -0.36 -0.38 16 15 C -0.06 0.02 10.04 -39.60 -0.40 -0.38 16 16 C -0.16 -0.13 8.66 -39.56 -0.34 -0.48 16 17 C -0.01 -0.02 5.29 -104.62 -0.55 -0.57 16 18 C -0.09 -0.04 2.01 36.01 0.07 0.03 16 19 O -0.53 -0.36 12.69 -35.23 -0.45 -0.81 16 20 Si 0.95 -0.66 25.49 -169.99 -4.33 -4.99 16 21 H -0.25 -0.01 6.73 56.52 0.38 0.37 16 22 H -0.25 0.03 7.11 56.52 0.40 0.43 16 23 H -0.25 0.16 7.11 56.52 0.40 0.56 16 24 C -0.10 -0.33 6.23 -39.38 -0.25 -0.58 16 25 Br -0.02 -0.08 31.44 -68.01 -2.14 -2.22 16 26 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 27 H 0.05 0.02 8.14 -51.93 -0.42 -0.41 16 28 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 29 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.06 -0.08 7.79 -51.93 -0.40 -0.48 16 32 H 0.06 0.02 7.96 -51.93 -0.41 -0.39 16 33 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 34 H 0.05 -0.03 7.79 -51.93 -0.40 -0.44 16 35 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 36 H 0.07 -0.10 7.79 -51.92 -0.40 -0.51 16 37 H 0.07 -0.06 7.79 -51.93 -0.40 -0.46 16 38 H 0.07 -0.05 7.79 -51.93 -0.40 -0.46 16 39 H 0.07 -0.10 7.79 -51.93 -0.40 -0.50 16 40 H 0.07 -0.11 7.48 -51.93 -0.39 -0.50 16 41 H 0.06 -0.19 7.21 -51.93 -0.37 -0.56 16 42 H 0.06 -0.18 7.21 -51.93 -0.37 -0.56 16 43 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 44 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 45 H 0.07 -0.17 7.66 -51.93 -0.40 -0.57 16 46 H 0.07 -0.19 7.66 -51.93 -0.40 -0.59 16 47 H 0.14 -0.34 6.30 -52.49 -0.33 -0.67 16 48 H 0.14 -0.41 8.06 -52.48 -0.42 -0.83 16 49 H 0.13 -0.08 4.88 -52.49 -0.26 -0.34 16 50 H 0.08 -0.03 7.21 -51.93 -0.37 -0.41 16 51 H 0.38 -1.41 8.74 45.56 0.40 -1.01 16 LS Contribution 420.77 15.07 6.34 6.34 Total: 0.00 -5.85 420.77 -10.14 -15.99 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: -8.30 Total: -11.85 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 0.67 Total: 1.82 kcal Atomic # 8 Polarization: -0.91 SS G_CDS: -0.93 Total: -1.84 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: -5.77 Total: -8.23 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.14 Total: -2.22 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -5.85 -10.14 -15.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.112 kcal (2) G-P(sol) polarization free energy of solvation -5.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds