Wall clock time and date at job start Mon Mar 8 2021 08:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47174 * 2 1 4 4 C 1.52999 * 109.47503 * 239.99617 * 2 1 3 5 5 Si 1.86303 * 109.47258 * 119.99810 * 2 1 3 6 6 C 1.86308 * 109.47076 * 299.99993 * 5 2 1 7 7 C 1.86296 * 109.47040 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47337 * 59.99942 * 5 2 1 9 9 C 1.42898 * 114.00209 * 179.97438 * 8 5 2 10 10 C 1.53001 * 109.47145 * 179.97438 * 9 8 5 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 8 12 12 O 1.42903 * 109.46726 * 180.02562 * 11 10 9 13 13 C 1.35925 * 116.99722 * 180.02562 * 12 11 10 14 14 C 1.38677 * 120.05563 * 0.02562 * 13 12 11 15 15 C 1.38194 * 119.94757 * 179.97438 * 14 13 12 16 16 C 1.38235 * 120.07709 * 359.96930 * 15 14 13 17 17 C 1.38291 * 120.11156 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.97527 * 179.97438 * 17 16 15 19 19 O 1.42902 * 109.47306 * 255.00622 * 18 17 16 20 20 Si 1.86306 * 109.46824 * 15.00365 * 18 17 16 21 21 H 1.48502 * 109.47098 * 299.99538 * 20 18 17 22 22 H 1.48494 * 109.47197 * 59.99897 * 20 18 17 23 23 H 1.48499 * 109.46799 * 179.97438 * 20 18 17 24 24 C 1.38191 * 120.05286 * 359.79052 * 17 16 15 25 25 Br 1.89100 * 120.04052 * 180.25003 * 24 17 16 26 26 H 1.08998 * 109.46855 * 300.00219 * 1 2 3 27 27 H 1.08994 * 109.46913 * 60.00573 * 1 2 3 28 28 H 1.09005 * 109.46550 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47503 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46847 * 299.99997 * 3 2 1 31 31 H 1.09001 * 109.47185 * 59.99654 * 3 2 1 32 32 H 1.09000 * 109.46985 * 300.00228 * 4 2 1 33 33 H 1.09006 * 109.46759 * 59.99855 * 4 2 1 34 34 H 1.09000 * 109.47380 * 179.97438 * 4 2 1 35 35 H 1.08993 * 109.46878 * 180.02562 * 6 5 2 36 36 H 1.09008 * 109.46916 * 300.00134 * 6 5 2 37 37 H 1.08999 * 109.46987 * 59.99664 * 6 5 2 38 38 H 1.09001 * 109.47243 * 299.99745 * 7 5 2 39 39 H 1.09000 * 109.47509 * 59.99848 * 7 5 2 40 40 H 1.09006 * 109.47013 * 179.97438 * 7 5 2 41 41 H 1.09001 * 109.46621 * 60.00038 * 9 8 5 42 42 H 1.09002 * 109.47259 * 300.00299 * 9 8 5 43 43 H 1.09001 * 109.46652 * 60.00333 * 10 9 8 44 44 H 1.08992 * 109.47514 * 300.00423 * 10 9 8 45 45 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 46 46 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 47 47 H 1.07994 * 120.02844 * 359.95262 * 14 13 12 48 48 H 1.08005 * 119.95649 * 180.02562 * 15 14 13 49 49 H 1.07993 * 119.94653 * 180.02562 * 16 15 14 50 50 H 1.08995 * 109.47442 * 135.00111 * 18 17 16 51 51 H 0.96698 * 114.00034 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 14 2.1511 -0.8782 1.5212 6 6 1.5300 0.0001 3.0424 7 6 4.0140 -0.8775 1.5215 8 8 1.6074 -2.4159 1.5213 9 6 2.0296 -3.1816 2.6516 10 6 1.4637 -4.5992 2.5474 11 6 1.9162 -5.4192 3.7572 12 8 1.3881 -6.7434 3.6596 13 6 1.6978 -7.6068 4.6627 14 6 2.4928 -7.1878 5.7190 15 6 2.8059 -8.0673 6.7379 16 6 2.3270 -9.3636 6.7058 17 6 1.5339 -9.7844 5.6539 18 6 1.0140 -11.1985 5.6216 19 8 1.7508 -11.9551 4.6589 20 14 1.2142 -11.9722 7.3046 21 1 2.6516 -11.9817 7.6772 22 1 0.4486 -11.1860 8.3051 23 1 0.7013 -13.3654 7.2730 24 6 1.2147 -8.9080 4.6342 25 35 0.1243 -9.4817 3.1997 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1301 -0.7209 -1.2494 35 1 1.8938 -0.5134 3.9323 36 1 1.8934 1.0279 3.0423 37 1 0.4400 0.0002 3.0423 38 1 4.3777 -1.3911 0.6315 39 1 4.3770 0.1503 1.5217 40 1 4.3774 -1.3909 2.4118 41 1 1.6655 -2.7116 3.5652 42 1 3.1185 -3.2254 2.6746 43 1 1.8274 -5.0693 1.6337 44 1 0.3749 -4.5551 2.5246 45 1 3.0051 -5.4633 3.7796 46 1 1.5528 -4.9492 4.6711 47 1 2.8673 -6.1752 5.7450 48 1 3.4247 -7.7410 7.5608 49 1 2.5726 -10.0490 7.5034 50 1 -0.0411 -11.1916 5.3481 51 1 1.4690 -12.8771 4.5840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10910592_18527726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:08:09 Heat of formation + Delta-G solvation = -138.009186 kcal Electronic energy + Delta-G solvation = -27568.952472 eV Core-core repulsion = 23638.409170 eV Total energy + Delta-G solvation = -3930.543302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 404.098 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.39344 -39.31315 -38.16037 -37.30364 -36.82705 -33.80533 -33.31445 -31.83221 -29.99887 -29.36213 -29.05368 -27.83982 -27.37644 -27.28175 -26.19954 -23.58653 -22.95904 -21.78286 -20.41495 -18.99339 -18.48935 -17.87697 -17.52303 -17.47556 -17.02627 -16.16501 -15.99919 -15.89006 -15.63749 -15.26321 -14.87464 -14.86049 -14.71348 -14.52523 -14.39781 -14.16907 -13.92037 -13.62576 -13.47268 -13.37063 -13.19738 -13.09044 -13.03284 -12.95644 -12.92149 -12.65289 -12.40182 -12.36255 -12.15110 -11.93988 -11.87639 -11.82927 -11.70109 -11.68664 -11.63572 -11.34070 -11.28694 -11.07092 -10.29605 -10.29475 -10.05144 -9.87283 -9.29142 -0.04205 0.18246 0.70910 1.11181 1.43906 1.47569 1.52658 1.79127 1.88368 2.09519 2.14408 2.44005 2.53502 3.36353 3.74256 3.81466 3.90554 3.98732 4.04262 4.07797 4.11907 4.12599 4.13583 4.22693 4.37568 4.39521 4.43460 4.46556 4.50582 4.68894 4.75966 4.76376 4.79463 4.80914 4.82418 4.82918 4.95054 4.99969 5.07007 5.08545 5.09102 5.09559 5.13953 5.21971 5.29321 5.34963 5.40767 5.44980 5.55365 5.56532 5.62285 5.65875 6.23855 6.79883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.386 4.386 3 C -0.140 4.140 4 C -0.137 4.137 5 Si 1.317 2.683 6 C -0.517 4.517 7 C -0.517 4.517 8 O -0.642 6.642 9 C 0.081 3.919 10 C -0.121 4.121 11 C 0.051 3.949 12 O -0.318 6.318 13 C 0.144 3.856 14 C -0.200 4.200 15 C -0.054 4.054 16 C -0.169 4.169 17 C -0.026 4.026 18 C -0.099 4.099 19 O -0.552 6.552 20 Si 0.989 3.011 21 H -0.254 1.254 22 H -0.255 1.255 23 H -0.253 1.253 24 C -0.130 4.130 25 Br -0.042 7.042 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.166 0.834 48 H 0.168 0.832 49 H 0.145 0.855 50 H 0.083 0.917 51 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 1.750 5.071 5.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.428 4.428 3 C -0.197 4.197 4 C -0.194 4.194 5 Si 1.447 2.553 6 C -0.618 4.618 7 C -0.619 4.619 8 O -0.602 6.602 9 C 0.006 3.994 10 C -0.158 4.158 11 C -0.023 4.023 12 O -0.231 6.231 13 C 0.096 3.904 14 C -0.220 4.220 15 C -0.072 4.072 16 C -0.188 4.188 17 C -0.028 4.028 18 C -0.208 4.208 19 O -0.360 6.360 20 Si 0.811 3.189 21 H -0.178 1.178 22 H -0.178 1.178 23 H -0.177 1.177 24 C -0.210 4.210 25 Br 0.044 6.956 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.184 0.816 48 H 0.185 0.815 49 H 0.162 0.838 50 H 0.101 0.899 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.953 1.527 4.910 5.501 hybrid contribution -0.022 0.348 -0.390 0.523 sum 1.931 1.875 4.520 5.261 Atomic orbital electron populations 1.21540 0.94393 1.01661 1.01824 1.25979 1.00328 1.03149 1.13383 1.21599 1.01307 0.94633 1.02194 1.21542 1.01040 0.99935 0.96916 0.76168 0.62583 0.52553 0.63981 1.27077 1.06813 1.09871 1.18086 1.27087 1.25095 1.05070 1.04654 1.85323 1.79745 1.46769 1.48350 1.22000 0.99200 0.90763 0.87428 1.21475 1.02721 0.93906 0.97739 1.22987 0.99752 0.79373 1.00215 1.86153 1.70881 1.23021 1.43054 1.18799 0.94091 0.88733 0.88754 1.21638 1.02453 1.03065 0.94804 1.21434 0.96092 0.91780 0.97898 1.21286 0.99968 0.98351 0.99179 1.19320 0.96347 0.94042 0.93091 1.25033 0.98233 0.91557 1.05950 1.86485 1.61029 1.27611 1.60924 0.85149 0.80687 0.79496 0.73610 1.17843 1.17846 1.17733 1.21139 1.07550 0.94438 0.97875 1.96659 1.65291 1.90164 1.43520 0.91992 0.93468 0.92706 0.91737 0.93295 0.91702 0.92713 0.93468 0.92028 0.90635 0.90367 0.91268 0.91322 0.90365 0.90658 0.90527 0.90632 0.90893 0.90727 0.89718 0.89472 0.81625 0.81465 0.83770 0.89913 0.75269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.12 7.85 71.98 0.56 0.44 16 2 C -0.39 0.15 0.53 -10.79 -0.01 0.15 16 3 C -0.14 0.20 7.85 71.98 0.56 0.77 16 4 C -0.14 -0.14 7.85 71.98 0.56 0.43 16 5 Si 1.32 -4.28 8.45 68.60 0.58 -3.70 16 6 C -0.52 1.76 8.50 113.37 0.96 2.73 16 7 C -0.52 1.67 8.50 113.37 0.96 2.64 16 8 O -0.64 0.15 8.56 -148.98 -1.28 -1.13 16 9 C 0.08 -0.34 5.12 71.98 0.37 0.03 16 10 C -0.12 0.18 5.95 30.59 0.18 0.36 16 11 C 0.05 -0.16 4.74 71.98 0.34 0.18 16 12 O -0.32 -1.48 9.47 -92.71 -0.88 -2.36 16 13 C 0.14 0.70 6.68 22.52 0.15 0.85 16 14 C -0.20 0.20 9.04 22.36 0.20 0.40 16 15 C -0.05 0.11 10.04 22.26 0.22 0.34 16 16 C -0.17 -0.21 8.66 22.28 0.19 -0.01 16 17 C -0.03 -0.13 5.29 -19.86 -0.11 -0.23 16 18 C -0.10 -0.16 2.01 71.24 0.14 -0.01 16 19 O -0.55 -1.22 12.69 -148.98 -1.89 -3.11 16 20 Si 0.99 -1.52 25.49 68.60 1.75 0.23 16 21 H -0.25 0.09 6.73 99.48 0.67 0.76 16 22 H -0.25 0.13 7.11 99.48 0.71 0.83 16 23 H -0.25 0.43 7.11 99.48 0.71 1.14 16 24 C -0.13 -0.97 6.23 22.40 0.14 -0.83 16 25 Br -0.04 -0.35 31.44 -20.37 -0.64 -0.99 16 26 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 27 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.05 0.10 7.96 -2.38 -0.02 0.08 16 29 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 30 H 0.05 0.00 8.14 -2.38 -0.02 -0.02 16 31 H 0.06 -0.21 7.79 -2.39 -0.02 -0.22 16 32 H 0.05 0.11 7.96 -2.39 -0.02 0.09 16 33 H 0.05 0.09 8.14 -2.38 -0.02 0.08 16 34 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 35 H 0.07 -0.39 7.48 -2.39 -0.02 -0.40 16 36 H 0.08 -0.30 7.79 -2.38 -0.02 -0.32 16 37 H 0.07 -0.16 7.79 -2.39 -0.02 -0.17 16 38 H 0.07 -0.14 7.79 -2.39 -0.02 -0.15 16 39 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 40 H 0.07 -0.37 7.48 -2.38 -0.02 -0.39 16 41 H 0.08 -0.61 7.21 -2.39 -0.02 -0.63 16 42 H 0.08 -0.59 7.21 -2.39 -0.02 -0.61 16 43 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.08 -0.56 7.66 -2.39 -0.02 -0.58 16 46 H 0.09 -0.62 7.66 -2.39 -0.02 -0.64 16 47 H 0.17 -1.22 6.30 -2.91 -0.02 -1.24 16 48 H 0.17 -1.47 8.06 -2.91 -0.02 -1.50 16 49 H 0.14 -0.29 4.88 -2.91 -0.01 -0.30 16 50 H 0.08 0.04 7.21 -2.39 -0.02 0.03 16 51 H 0.40 -2.66 8.74 -74.06 -0.65 -3.30 16 Total: 0.00 -14.86 420.77 4.07 -10.79 By element: Atomic # 1 Polarization: -8.92 SS G_CDS: 0.97 Total: -7.95 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.45 Total: 8.23 kcal Atomic # 8 Polarization: -2.55 SS G_CDS: -4.04 Total: -6.60 kcal Atomic # 14 Polarization: -5.80 SS G_CDS: 2.33 Total: -3.47 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.64 Total: -0.99 kcal Total: -14.86 4.07 -10.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_18527726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.221 kcal (2) G-P(sol) polarization free energy of solvation -14.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds