Wall clock time and date at job start Mon Mar 8 2021 09:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35915 * 116.99713 * 180.02562 * 10 9 8 12 12 C 1.38680 * 120.06223 * 359.72103 * 11 10 9 13 13 C 1.38183 * 119.94998 * 179.72494 * 12 11 10 14 14 C 1.38239 * 120.07569 * 0.53225 * 13 12 11 15 15 C 1.38290 * 120.11590 * 359.76675 * 14 13 12 16 16 C 1.50698 * 119.97256 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.46945 * 254.97627 * 16 15 14 18 18 Si 1.86298 * 109.47486 * 14.98220 * 16 15 14 19 19 H 1.48499 * 109.46909 * 299.99792 * 18 16 15 20 20 H 1.48493 * 109.47319 * 59.99908 * 18 16 15 21 21 H 1.48500 * 109.46936 * 180.02562 * 18 16 15 22 22 C 1.38186 * 120.04479 * 359.95859 * 15 14 13 23 23 Br 1.89099 * 120.03376 * 179.97438 * 22 15 14 24 24 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 25 25 C 1.38234 * 120.00067 * 0.02562 * 24 8 7 26 26 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 27 27 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 28 28 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 31 31 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 32 32 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 33 33 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 34 34 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 38 38 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 39 39 H 1.07999 * 120.01869 * 0.02562 * 12 11 10 40 40 H 1.08007 * 119.95942 * 180.28128 * 13 12 11 41 41 H 1.07996 * 119.94166 * 179.74608 * 14 13 12 42 42 H 1.09006 * 109.46790 * 134.97984 * 16 15 14 43 43 H 0.96703 * 114.00029 * 180.02562 * 17 16 15 44 44 H 1.08001 * 119.99624 * 180.02562 * 24 8 7 45 45 H 1.07999 * 120.00008 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9735 -3.4904 6.0513 12 6 5.2247 -4.0716 7.0636 13 6 5.8601 -4.6903 8.1234 14 6 7.2409 -4.7207 8.1811 15 6 7.9904 -4.1366 7.1764 16 6 9.4955 -4.1712 7.2429 17 8 9.9857 -2.8813 7.6145 18 14 10.0326 -5.4281 8.5088 19 1 9.4869 -5.0555 9.8387 20 1 9.5233 -6.7684 8.1226 21 1 11.5158 -5.4617 8.5747 22 6 7.3602 -3.5216 6.1115 23 35 8.3854 -2.7224 4.7382 24 6 3.1780 -0.8211 3.8164 25 6 2.7118 -0.1705 2.6894 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4112 34 1 3.5740 -0.8787 -1.5209 35 1 2.5363 -2.7986 0.5823 36 1 3.3666 -3.9577 2.5898 37 1 3.5590 -2.3806 5.9006 38 1 3.5628 -3.9213 5.0094 39 1 4.1459 -4.0450 7.0212 40 1 5.2771 -5.1470 8.9096 41 1 7.7352 -5.2012 9.0125 42 1 9.8961 -4.4448 6.2667 43 1 10.9493 -2.8296 7.6765 44 1 3.3587 -0.2656 4.7248 45 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_10910592_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:43:23 Heat of formation + Delta-G solvation = -56.700922 kcal Electronic energy + Delta-G solvation = -25076.951962 eV Core-core repulsion = 21422.324938 eV Total energy + Delta-G solvation = -3654.627024 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43923 -40.10117 -38.91072 -37.30130 -33.57386 -33.10421 -31.87956 -31.75053 -29.94497 -29.55379 -28.44183 -28.41872 -27.62937 -26.46490 -23.53082 -23.48114 -22.74619 -21.61423 -19.01434 -18.49376 -17.98636 -17.45756 -17.08135 -16.95992 -16.02937 -15.92001 -15.63322 -15.52824 -14.94370 -14.55501 -14.39423 -14.36179 -14.18839 -14.13331 -13.94864 -13.87832 -13.81430 -13.53785 -13.39865 -13.25981 -13.25623 -13.10362 -12.84532 -12.47200 -12.22135 -12.15564 -12.04570 -11.83463 -11.74058 -11.64249 -11.04618 -10.90611 -10.88414 -10.83292 -10.31301 -9.82176 -9.77215 -9.69026 -9.21794 -0.00975 0.16342 0.22572 0.55546 0.84739 1.07487 1.40986 1.46739 1.70012 1.84101 1.84672 1.88461 2.20980 2.45441 2.54209 3.02236 3.31648 3.61651 3.76375 3.77532 3.87987 3.94504 4.06252 4.10863 4.17467 4.20886 4.27390 4.47856 4.50948 4.64304 4.67285 4.70023 4.71494 4.74991 4.75799 4.76186 4.77161 4.96563 5.00452 5.12520 5.15658 5.29420 5.40068 5.45765 5.50450 5.50914 5.53255 5.62120 5.62665 6.11358 6.22253 6.58757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.088 4.088 9 C 0.099 3.901 10 O -0.293 6.293 11 C 0.158 3.842 12 C -0.202 4.202 13 C -0.057 4.057 14 C -0.158 4.158 15 C -0.009 4.009 16 C -0.090 4.090 17 O -0.533 6.533 18 Si 0.950 3.050 19 H -0.246 1.246 20 H -0.247 1.247 21 H -0.253 1.253 22 C -0.103 4.103 23 Br -0.025 7.025 24 C -0.104 4.104 25 C -0.092 4.092 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.082 0.918 43 H 0.381 0.619 44 H 0.121 0.879 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 -1.443 0.266 2.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.556 4.556 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.402 4.402 6 C -0.110 4.110 7 C -0.123 4.123 8 C -0.088 4.088 9 C 0.024 3.976 10 O -0.206 6.206 11 C 0.110 3.890 12 C -0.221 4.221 13 C -0.075 4.075 14 C -0.177 4.177 15 C -0.011 4.011 16 C -0.201 4.201 17 O -0.339 6.339 18 Si 0.771 3.229 19 H -0.169 1.169 20 H -0.170 1.170 21 H -0.176 1.176 22 C -0.183 4.183 23 Br 0.061 6.939 24 C -0.122 4.122 25 C -0.110 4.110 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.100 0.900 43 H 0.229 0.771 44 H 0.139 0.861 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.701 -1.546 0.242 2.311 hybrid contribution 0.067 -0.139 0.305 0.342 sum -1.634 -1.684 0.547 2.409 Atomic orbital electron populations 1.26119 1.20421 1.04573 1.04507 0.78186 0.66833 0.66149 0.63709 1.26137 1.06530 1.18538 1.04562 1.26137 1.06522 1.08032 1.15060 1.27478 1.03014 0.99507 1.10155 1.21071 0.97536 0.94672 0.97702 1.21136 0.98666 0.99903 0.92566 1.19398 1.00928 0.94183 0.94329 1.21713 0.78357 1.00574 0.96949 1.86294 1.20911 1.72122 1.41244 1.18597 0.90560 0.92273 0.87591 1.21302 1.00490 1.04357 0.95978 1.21014 0.94050 0.95558 0.96902 1.21006 0.94468 1.03350 0.98870 1.19006 0.94009 0.95599 0.92518 1.24845 0.92933 0.94681 1.07602 1.86538 1.26618 1.28857 1.91925 0.85711 0.80519 0.77642 0.79008 1.16915 1.17002 1.17647 1.20916 0.91173 1.07644 0.98607 1.96709 1.69946 1.80765 1.46495 1.21146 0.98591 0.93523 0.98986 1.21075 0.97510 0.99753 0.92620 0.91163 0.91014 0.91171 0.91016 0.90944 0.91165 0.91176 0.90939 0.91019 0.85894 0.86139 0.90793 0.90789 0.84359 0.84517 0.84937 0.89997 0.77135 0.86122 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.66 8.65 101.05 0.87 1.54 16 2 Si 1.06 -2.44 12.32 -169.99 -2.09 -4.53 16 3 C -0.45 0.66 8.54 101.05 0.86 1.53 16 4 C -0.45 0.69 8.53 101.05 0.86 1.55 16 5 C -0.36 -0.03 4.59 -39.58 -0.18 -0.21 16 6 C -0.09 -0.05 9.29 -39.58 -0.37 -0.42 16 7 C -0.10 -0.13 9.70 -39.58 -0.38 -0.51 16 8 C -0.09 -0.13 5.51 -104.62 -0.58 -0.71 16 9 C 0.10 0.05 4.87 36.01 0.18 0.22 16 10 O -0.29 -0.91 9.46 -19.47 -0.18 -1.10 16 11 C 0.16 0.46 6.68 -39.20 -0.26 0.20 16 12 C -0.20 -0.15 9.04 -39.44 -0.36 -0.51 16 13 C -0.06 -0.01 10.04 -39.60 -0.40 -0.41 16 14 C -0.16 -0.19 8.66 -39.56 -0.34 -0.53 16 15 C -0.01 -0.02 5.29 -104.62 -0.55 -0.58 16 16 C -0.09 -0.07 2.01 36.00 0.07 0.01 16 17 O -0.53 -0.51 12.67 -35.23 -0.45 -0.96 16 18 Si 0.95 -0.44 25.49 -169.99 -4.33 -4.77 16 19 H -0.25 -0.07 6.73 56.52 0.38 0.31 16 20 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 21 H -0.25 0.11 7.11 56.52 0.40 0.51 16 22 C -0.10 -0.38 6.23 -39.38 -0.25 -0.63 16 23 Br -0.02 -0.10 31.44 -68.01 -2.14 -2.23 16 24 C -0.10 -0.14 9.70 -39.58 -0.38 -0.53 16 25 C -0.09 -0.06 9.29 -39.58 -0.37 -0.43 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 32 H 0.07 -0.12 7.69 -51.93 -0.40 -0.52 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 35 H 0.12 -0.17 7.43 -52.49 -0.39 -0.55 16 36 H 0.12 -0.01 8.06 -52.49 -0.42 -0.43 16 37 H 0.07 -0.06 7.60 -51.93 -0.39 -0.46 16 38 H 0.07 -0.08 7.62 -51.93 -0.40 -0.47 16 39 H 0.14 -0.22 6.30 -52.49 -0.33 -0.55 16 40 H 0.14 -0.35 8.06 -52.48 -0.42 -0.77 16 41 H 0.13 -0.04 4.88 -52.49 -0.26 -0.30 16 42 H 0.08 -0.01 7.22 -51.93 -0.38 -0.38 16 43 H 0.38 -1.32 8.74 45.56 0.40 -0.92 16 44 H 0.12 0.02 8.06 -52.49 -0.42 -0.40 16 45 H 0.12 -0.15 7.44 -52.49 -0.39 -0.54 16 LS Contribution 391.45 15.07 5.90 5.90 Total: 0.00 -6.53 391.45 -10.78 -17.32 By element: Atomic # 1 Polarization: -3.29 SS G_CDS: -5.91 Total: -9.20 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.57 Total: -0.42 kcal Atomic # 8 Polarization: -1.42 SS G_CDS: -0.63 Total: -2.05 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: -6.43 Total: -9.30 kcal Atomic # 35 Polarization: -0.10 SS G_CDS: -2.14 Total: -2.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -6.53 -10.78 -17.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.385 kcal (2) G-P(sol) polarization free energy of solvation -6.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds