Wall clock time and date at job start Mon Mar 8 2021 09:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86292 * 109.47175 * 2 1 4 4 C 1.86304 * 109.47175 * 239.99928 * 2 1 3 5 5 C 1.86796 * 109.47345 * 120.00283 * 2 1 3 6 6 C 1.38233 * 120.00338 * 89.99399 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72477 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50701 * 120.00243 * 180.02562 * 8 7 6 10 10 O 1.42905 * 109.47046 * 89.99998 * 9 8 7 11 11 C 1.35915 * 116.99713 * 180.02562 * 10 9 8 12 12 C 1.38680 * 120.06223 * 359.72103 * 11 10 9 13 13 C 1.38183 * 119.94998 * 179.72494 * 12 11 10 14 14 C 1.38239 * 120.07569 * 0.53225 * 13 12 11 15 15 C 1.38290 * 120.11590 * 359.76675 * 14 13 12 16 16 C 1.50698 * 119.97256 * 179.97438 * 15 14 13 17 17 O 1.42904 * 109.46945 * 254.97627 * 16 15 14 18 18 Si 1.86298 * 109.47486 * 14.98220 * 16 15 14 19 19 H 1.48499 * 109.46909 * 299.99792 * 18 16 15 20 20 H 1.48493 * 109.47319 * 59.99908 * 18 16 15 21 21 H 1.48500 * 109.46936 * 180.02562 * 18 16 15 22 22 C 1.38186 * 120.04479 * 359.95859 * 15 14 13 23 23 Br 1.89099 * 120.03376 * 179.97438 * 22 15 14 24 24 C 1.38238 * 119.99693 * 359.97438 * 8 7 6 25 25 C 1.38234 * 120.00067 * 0.02562 * 24 8 7 26 26 H 1.08998 * 109.47461 * 299.99862 * 1 2 3 27 27 H 1.08995 * 109.47041 * 60.00323 * 1 2 3 28 28 H 1.09000 * 109.46941 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47107 * 299.99920 * 3 2 1 31 31 H 1.09001 * 109.47298 * 60.00299 * 3 2 1 32 32 H 1.09004 * 109.47045 * 300.00301 * 4 2 1 33 33 H 1.09003 * 109.47110 * 60.00078 * 4 2 1 34 34 H 1.09000 * 109.47158 * 180.02562 * 4 2 1 35 35 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 36 36 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 37 37 H 1.08996 * 109.47280 * 210.00015 * 9 8 7 38 38 H 1.08999 * 109.46887 * 329.99909 * 9 8 7 39 39 H 1.07999 * 120.01869 * 0.02562 * 12 11 10 40 40 H 1.08007 * 119.95942 * 180.28128 * 13 12 11 41 41 H 1.07996 * 119.94166 * 179.74608 * 14 13 12 42 42 H 1.09006 * 109.46790 * 134.97984 * 16 15 14 43 43 H 0.96703 * 114.00029 * 180.02562 * 17 16 15 44 44 H 1.08001 * 119.99624 * 180.02562 * 24 8 7 45 45 H 1.07999 * 120.00008 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4857 -0.8806 1.5251 6 6 2.7160 -2.2432 1.4909 7 6 3.1823 -2.8939 2.6179 8 6 3.4130 -2.1829 3.7807 9 6 3.9219 -2.8922 5.0092 10 8 5.3509 -2.8862 5.0051 11 6 5.9735 -3.4904 6.0513 12 6 5.2247 -4.0716 7.0636 13 6 5.8601 -4.6903 8.1234 14 6 7.2409 -4.7207 8.1811 15 6 7.9904 -4.1366 7.1764 16 6 9.4955 -4.1712 7.2429 17 8 9.9857 -2.8813 7.6145 18 14 10.0326 -5.4281 8.5088 19 1 9.4869 -5.0555 9.8387 20 1 9.5233 -6.7684 8.1226 21 1 11.5158 -5.4617 8.5747 22 6 7.3602 -3.5216 6.1115 23 35 8.3854 -2.7224 4.7382 24 6 3.1780 -0.8211 3.8164 25 6 2.7118 -0.1705 2.6894 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5739 1.7564 -0.0005 30 1 2.1206 2.2702 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1206 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4112 34 1 3.5740 -0.8787 -1.5209 35 1 2.5363 -2.7986 0.5823 36 1 3.3666 -3.9577 2.5898 37 1 3.5590 -2.3806 5.9006 38 1 3.5628 -3.9213 5.0094 39 1 4.1459 -4.0450 7.0212 40 1 5.2771 -5.1470 8.9096 41 1 7.7352 -5.2012 9.0125 42 1 9.8961 -4.4448 6.2667 43 1 10.9493 -2.8296 7.6765 44 1 3.3587 -0.2656 4.7248 45 1 2.5286 0.8935 2.7171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_10910592_9403676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:43:22 Heat of formation + Delta-G solvation = -47.346839 kcal Electronic energy + Delta-G solvation = -25076.546339 eV Core-core repulsion = 21422.324938 eV Total energy + Delta-G solvation = -3654.221400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 394.051 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50576 -40.11422 -38.96242 -37.32577 -33.64829 -33.13328 -31.88743 -31.83235 -30.05656 -29.43225 -28.30644 -28.27622 -27.64182 -26.49240 -23.59620 -23.49466 -22.78188 -21.64112 -19.06834 -18.50747 -18.02369 -17.49414 -17.13050 -16.98421 -16.02895 -15.93162 -15.67355 -15.54985 -14.93928 -14.59571 -14.39390 -14.34623 -14.07351 -14.06248 -13.96639 -13.82384 -13.72549 -13.52952 -13.36759 -13.14399 -13.12655 -12.97719 -12.83295 -12.48154 -12.23636 -12.15770 -12.05183 -11.86648 -11.82056 -11.68201 -11.09902 -10.93099 -10.78379 -10.76915 -10.31582 -9.91280 -9.81093 -9.69632 -9.33340 -0.08002 0.14188 0.14504 0.51700 0.67526 1.09821 1.46065 1.51448 1.82647 1.86550 1.95985 2.01336 2.24377 2.40304 2.65945 3.00045 3.33094 3.61972 3.77403 3.79955 3.89098 3.94946 4.05233 4.11711 4.18065 4.22849 4.29375 4.41571 4.52207 4.65972 4.70605 4.83886 4.84125 4.87766 4.88401 4.88586 4.90140 4.91957 4.99826 5.09703 5.15215 5.25142 5.39234 5.50320 5.55829 5.58363 5.59246 5.67339 5.69582 6.11338 6.16624 6.78435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.126 2.874 3 C -0.463 4.463 4 C -0.463 4.463 5 C -0.373 4.373 6 C -0.104 4.104 7 C -0.120 4.120 8 C -0.102 4.102 9 C 0.097 3.903 10 O -0.312 6.312 11 C 0.143 3.857 12 C -0.202 4.202 13 C -0.053 4.053 14 C -0.168 4.168 15 C -0.025 4.025 16 C -0.099 4.099 17 O -0.552 6.552 18 Si 0.990 3.010 19 H -0.254 1.254 20 H -0.255 1.255 21 H -0.252 1.252 22 C -0.129 4.129 23 Br -0.041 7.041 24 C -0.122 4.122 25 C -0.104 4.104 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.083 0.917 43 H 0.397 0.603 44 H 0.126 0.874 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -1.881 0.768 3.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.313 2.687 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.412 4.412 6 C -0.122 4.122 7 C -0.138 4.138 8 C -0.102 4.102 9 C 0.023 3.977 10 O -0.225 6.225 11 C 0.095 3.905 12 C -0.221 4.221 13 C -0.071 4.071 14 C -0.187 4.187 15 C -0.027 4.027 16 C -0.208 4.208 17 O -0.360 6.360 18 Si 0.811 3.189 19 H -0.178 1.178 20 H -0.178 1.178 21 H -0.176 1.176 22 C -0.209 4.209 23 Br 0.044 6.956 24 C -0.140 4.140 25 C -0.122 4.122 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.179 0.821 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.101 0.899 43 H 0.248 0.752 44 H 0.144 0.856 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.413 -1.981 0.747 3.210 hybrid contribution 0.270 0.010 0.152 0.310 sum -2.143 -1.971 0.899 3.047 Atomic orbital electron populations 1.26248 1.21222 1.04556 1.04637 0.77187 0.65405 0.64506 0.61591 1.26295 1.06278 1.19574 1.04896 1.26285 1.06284 1.08555 1.15847 1.28058 1.02430 0.99619 1.11100 1.21390 0.97397 0.95205 0.98197 1.21376 0.99033 1.00510 0.92914 1.19591 1.01252 0.94469 0.94927 1.21852 0.77298 1.01508 0.97068 1.86261 1.22177 1.72406 1.41700 1.18824 0.90581 0.92861 0.88222 1.21600 1.01582 1.03589 0.95346 1.21424 0.93926 0.94553 0.97200 1.21292 0.95184 1.03272 0.98904 1.19332 0.95112 0.95655 0.92564 1.25047 0.92214 0.95039 1.08503 1.86488 1.28333 1.29271 1.91955 0.85136 0.80062 0.76186 0.77486 1.17813 1.17839 1.17608 1.21130 0.91683 1.09034 0.99041 1.96654 1.70383 1.81180 1.47361 1.21374 0.99104 0.93830 0.99656 1.21381 0.97447 1.00704 0.92692 0.91319 0.90611 0.91278 0.91559 0.90580 0.90905 0.90841 0.90579 0.91535 0.84286 0.85422 0.89612 0.89360 0.82110 0.81455 0.83604 0.89921 0.75238 0.85631 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.58 8.65 113.37 0.98 2.56 16 2 Si 1.13 -5.50 12.32 68.60 0.85 -4.66 16 3 C -0.46 1.45 8.54 113.37 0.97 2.42 16 4 C -0.46 1.55 8.53 113.37 0.97 2.51 16 5 C -0.37 -0.17 4.59 22.27 0.10 -0.07 16 6 C -0.10 -0.17 9.29 22.27 0.21 0.04 16 7 C -0.12 -0.40 9.70 22.27 0.22 -0.18 16 8 C -0.10 -0.41 5.51 -19.86 -0.11 -0.52 16 9 C 0.10 0.14 4.87 71.24 0.35 0.49 16 10 O -0.31 -2.29 9.46 -92.59 -0.88 -3.17 16 11 C 0.14 0.95 6.68 22.52 0.15 1.10 16 12 C -0.20 -0.19 9.04 22.36 0.20 0.01 16 13 C -0.05 0.04 10.04 22.26 0.22 0.26 16 14 C -0.17 -0.35 8.66 22.28 0.19 -0.16 16 15 C -0.02 -0.14 5.29 -19.86 -0.11 -0.25 16 16 C -0.10 -0.21 2.01 71.24 0.14 -0.07 16 17 O -0.55 -1.48 12.67 -148.98 -1.89 -3.37 16 18 Si 0.99 -1.17 25.49 68.60 1.75 0.58 16 19 H -0.25 0.00 6.73 99.48 0.67 0.67 16 20 H -0.25 0.03 7.11 99.48 0.71 0.74 16 21 H -0.25 0.38 7.11 99.48 0.71 1.09 16 22 C -0.13 -1.11 6.23 22.40 0.14 -0.97 16 23 Br -0.04 -0.39 31.44 -20.37 -0.64 -1.03 16 24 C -0.12 -0.45 9.70 22.27 0.22 -0.24 16 25 C -0.10 -0.20 9.29 22.27 0.21 0.01 16 26 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 27 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H 0.08 -0.28 7.96 -2.39 -0.02 -0.30 16 31 H 0.07 -0.26 7.69 -2.39 -0.02 -0.28 16 32 H 0.07 -0.29 7.69 -2.38 -0.02 -0.31 16 33 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 34 H 0.07 -0.14 7.96 -2.39 -0.02 -0.15 16 35 H 0.14 -0.37 7.43 -2.91 -0.02 -0.39 16 36 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.09 -0.14 7.60 -2.39 -0.02 -0.16 16 38 H 0.09 -0.19 7.62 -2.39 -0.02 -0.21 16 39 H 0.16 -0.72 6.30 -2.91 -0.02 -0.74 16 40 H 0.17 -1.25 8.06 -2.91 -0.02 -1.27 16 41 H 0.15 -0.20 4.88 -2.91 -0.01 -0.21 16 42 H 0.08 0.09 7.22 -2.38 -0.02 0.07 16 43 H 0.40 -2.51 8.74 -74.06 -0.65 -3.16 16 44 H 0.13 0.19 8.06 -2.91 -0.02 0.17 16 45 H 0.14 -0.31 7.44 -2.91 -0.02 -0.33 16 Total: 0.00 -15.93 391.45 5.30 -10.62 By element: Atomic # 1 Polarization: -7.00 SS G_CDS: 1.07 Total: -5.93 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 5.05 Total: 6.96 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -2.76 Total: -6.54 kcal Atomic # 14 Polarization: -6.67 SS G_CDS: 2.59 Total: -4.07 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.64 Total: -1.03 kcal Total: -15.93 5.30 -10.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_10910592_9403676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.723 kcal (2) G-P(sol) polarization free energy of solvation -15.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds