Wall clock time and date at job start Mon Mar 8 2021 09:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38609 * 120.03002 * 0.02562 * 3 2 1 5 5 C 1.38651 * 119.89038 * 179.97438 * 4 3 2 6 6 O 1.35902 * 120.02692 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00078 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47144 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.46823 * 65.00284 * 8 7 6 10 10 Si 1.63097 * 113.99903 * 179.97438 * 9 8 7 11 11 C 1.86302 * 109.47371 * 299.99887 * 10 9 8 12 12 C 1.86302 * 109.47249 * 60.00142 * 10 9 8 13 13 C 1.86304 * 109.47229 * 179.97438 * 10 9 8 14 14 C 1.52998 * 109.46797 * 60.00364 * 13 10 9 15 15 C 1.52999 * 109.47184 * 180.02562 * 13 10 9 16 16 C 1.53001 * 109.47291 * 300.00206 * 13 10 9 17 17 C 1.38753 * 119.94702 * 0.02562 * 5 4 3 18 18 C 1.38196 * 120.05247 * 0.02562 * 17 5 4 19 19 C 1.50698 * 119.94578 * 179.97438 * 18 17 5 20 20 O 1.42910 * 109.47152 * 299.99949 * 19 18 17 21 21 Si 1.86305 * 109.47266 * 180.02562 * 19 18 17 22 22 H 1.48493 * 109.47203 * 59.99494 * 21 19 18 23 23 H 1.48501 * 109.47198 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46599 * 299.99705 * 21 19 18 25 25 C 1.38158 * 120.10844 * 359.70117 * 18 17 5 26 26 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.05157 * 359.95697 * 4 3 2 30 30 H 1.08996 * 109.47248 * 300.00331 * 7 6 5 31 31 H 1.09000 * 109.46782 * 59.99906 * 7 6 5 32 32 H 1.09002 * 109.46990 * 185.00118 * 8 7 6 33 33 H 1.08991 * 109.47263 * 305.00582 * 8 7 6 34 34 H 1.09006 * 109.46683 * 59.99797 * 11 10 9 35 35 H 1.08997 * 109.47137 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47305 * 300.00174 * 11 10 9 37 37 H 1.09003 * 109.47363 * 59.99674 * 12 10 9 38 38 H 1.08997 * 109.47617 * 179.97438 * 12 10 9 39 39 H 1.09006 * 109.46879 * 299.99708 * 12 10 9 40 40 H 1.08994 * 109.47816 * 59.99892 * 14 13 10 41 41 H 1.09001 * 109.47344 * 180.02562 * 14 13 10 42 42 H 1.09004 * 109.47141 * 299.99571 * 14 13 10 43 43 H 1.08996 * 109.47594 * 59.99990 * 15 13 10 44 44 H 1.09001 * 109.47078 * 180.02562 * 15 13 10 45 45 H 1.09003 * 109.47142 * 299.99770 * 15 13 10 46 46 H 1.08998 * 109.46874 * 59.99500 * 16 13 10 47 47 H 1.08992 * 109.46960 * 179.97438 * 16 13 10 48 48 H 1.09003 * 109.47013 * 300.00110 * 16 13 10 49 49 H 1.07998 * 119.97215 * 180.02562 * 17 5 4 50 50 H 1.08997 * 109.47304 * 59.99744 * 19 18 17 51 51 H 0.96698 * 113.99978 * 300.00185 * 20 19 18 52 52 H 1.08005 * 119.97171 * 180.29540 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3738 0.0005 5 6 1.9239 3.6077 0.0011 6 8 1.1870 4.7495 0.0021 7 6 -0.2346 4.6042 0.0021 8 6 -0.8886 5.9874 0.0040 9 8 -0.5776 6.6629 -1.2163 10 14 -1.2240 8.1559 -1.3313 11 6 -3.0803 8.0389 -1.2255 12 6 -0.5882 9.2169 0.0619 13 6 -0.7412 8.9179 -2.9614 14 6 -1.2629 8.0468 -4.1059 15 6 -1.3470 10.3187 -3.0690 16 6 0.7834 9.0141 -3.0477 17 6 3.3098 3.6757 0.0005 18 6 4.0597 2.5149 -0.0011 19 6 5.5647 2.5916 -0.0022 20 8 6.0052 3.2897 -1.1689 21 14 6.2744 0.8691 -0.0051 22 1 5.8146 0.1463 -1.2180 23 1 7.7575 0.9447 -0.0056 24 1 5.8167 0.1433 1.2069 25 6 3.4319 1.2842 0.0041 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2129 2.3187 0.0003 30 1 -0.5438 4.0569 -0.8883 31 1 -0.5437 4.0553 0.8916 32 1 -1.9695 5.8780 0.0935 33 1 -0.5110 6.5667 0.8464 34 1 -3.3625 7.5932 -0.2715 35 1 -3.5122 9.0367 -1.3019 36 1 -3.4523 7.4182 -2.0405 37 1 0.4979 9.2854 0.0000 38 1 -1.0198 10.2148 -0.0152 39 1 -0.8704 8.7713 1.0159 40 1 -2.3489 7.9782 -4.0444 41 1 -0.9800 8.4922 -5.0596 42 1 -0.8309 7.0489 -4.0291 43 1 -0.9751 10.9391 -2.2536 44 1 -1.0649 10.7643 -4.0229 45 1 -2.4331 10.2505 -3.0073 46 1 1.2153 8.0163 -2.9708 47 1 1.0658 9.4594 -4.0016 48 1 1.1550 9.6347 -2.2323 49 1 3.8028 4.6366 0.0014 50 1 5.9022 3.1226 0.8879 51 1 5.7401 2.8729 -2.0002 52 1 4.0201 0.3785 0.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_11759150_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:10 Heat of formation + Delta-G solvation = -183.445375 kcal Electronic energy + Delta-G solvation = -28639.543322 eV Core-core repulsion = 24728.165570 eV Total energy + Delta-G solvation = -3911.377752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62064 -39.95619 -38.90072 -37.88368 -36.84538 -36.65756 -32.08067 -31.64994 -30.34678 -29.42262 -29.11775 -28.32754 -27.87262 -27.39786 -26.66028 -24.18112 -23.48899 -21.89775 -20.43005 -19.73951 -18.20861 -18.07324 -17.92922 -17.26422 -16.88783 -16.81598 -16.39606 -16.14876 -16.05117 -15.87385 -15.67099 -15.45943 -14.98942 -14.87506 -14.73486 -14.60399 -14.09085 -13.94740 -13.64296 -13.54034 -13.46370 -13.29212 -13.26745 -13.08476 -12.95339 -12.92604 -12.59722 -12.52525 -12.41575 -12.36512 -12.17875 -11.98259 -11.90366 -11.71235 -11.62722 -11.60449 -11.47439 -11.35844 -10.42999 -10.40730 -10.09157 -9.63854 -8.96554 0.21342 0.49825 1.18626 1.38614 1.51259 1.58961 1.70073 1.95657 2.01281 2.13969 2.22400 2.38564 2.67910 3.47889 3.64401 3.77643 3.84564 3.91853 4.03569 4.08040 4.10732 4.11338 4.12795 4.13967 4.17195 4.21920 4.39358 4.44908 4.46877 4.48986 4.57117 4.61111 4.65399 4.69342 4.72195 4.76784 4.79789 4.85635 4.99318 5.09933 5.10890 5.15375 5.20150 5.27904 5.30004 5.33250 5.40612 5.43711 5.48745 5.50200 5.57829 5.59285 6.16985 6.50166 6.58551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.173 3.827 4 C -0.296 4.296 5 C 0.173 3.827 6 O -0.297 6.297 7 C 0.056 3.944 8 C 0.087 3.913 9 O -0.618 6.618 10 Si 1.286 2.714 11 C -0.512 4.512 12 C -0.511 4.511 13 C -0.374 4.374 14 C -0.134 4.134 15 C -0.137 4.137 16 C -0.134 4.134 17 C -0.159 4.159 18 C -0.043 4.043 19 C -0.080 4.080 20 O -0.535 6.535 21 Si 0.953 3.047 22 H -0.250 1.250 23 H -0.254 1.254 24 H -0.249 1.249 25 C -0.198 4.198 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.054 0.946 49 H 0.139 0.861 50 H 0.123 0.877 51 H 0.378 0.622 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 -0.707 1.037 4.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.127 3.873 4 C -0.316 4.316 5 C 0.127 3.873 6 O -0.210 6.210 7 C -0.019 4.019 8 C 0.011 3.989 9 O -0.577 6.577 10 Si 1.418 2.582 11 C -0.614 4.614 12 C -0.613 4.613 13 C -0.417 4.417 14 C -0.191 4.191 15 C -0.194 4.194 16 C -0.191 4.191 17 C -0.178 4.178 18 C -0.044 4.044 19 C -0.190 4.190 20 O -0.340 6.340 21 Si 0.775 3.225 22 H -0.173 1.173 23 H -0.178 1.178 24 H -0.173 1.173 25 C -0.217 4.217 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.073 0.927 49 H 0.157 0.843 50 H 0.141 0.859 51 H 0.225 0.775 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.077 -1.328 1.347 3.612 hybrid contribution -1.366 0.510 -0.270 1.483 sum -4.444 -0.818 1.077 4.645 Atomic orbital electron populations 1.23119 0.77971 1.04409 1.01451 1.86108 1.21739 1.26583 1.88180 1.18571 0.91672 0.83780 0.93293 1.21305 1.00612 0.92007 1.17630 1.18740 0.91177 0.84532 0.92880 1.86177 1.18583 1.28463 1.87787 1.23022 0.78950 0.97848 1.02112 1.22077 0.98336 0.92407 0.86080 1.85411 1.80513 1.51279 1.40539 0.76737 0.62161 0.54030 0.65298 1.27047 1.25044 1.04926 1.04348 1.27027 1.07336 1.11533 1.15365 1.25770 0.99832 1.01423 1.14718 1.21510 1.00447 0.99416 0.97724 1.21557 1.00304 0.95280 1.02243 1.21509 0.93725 1.02085 1.01813 1.20149 0.89932 0.99379 1.08357 1.19848 0.96080 0.91701 0.96751 1.25016 0.91529 1.10156 0.92334 1.86528 1.78316 1.53907 1.15265 0.85637 0.80148 0.74570 0.82139 1.17336 1.17823 1.17308 1.20156 0.91828 0.97831 1.11875 0.92497 0.92457 0.87819 0.84656 0.90782 0.90746 0.90433 0.91323 0.91542 0.90604 0.90866 0.90704 0.90747 0.91535 0.92767 0.92776 0.92202 0.92496 0.92487 0.92574 0.92034 0.92818 0.92677 0.84349 0.85918 0.77494 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 9.81 101.05 0.99 0.95 16 2 O -0.31 -0.64 10.50 -19.44 -0.20 -0.85 16 3 C 0.17 0.42 6.68 -39.24 -0.26 0.15 16 4 C -0.30 -0.43 8.02 -39.29 -0.32 -0.74 16 5 C 0.17 0.42 6.68 -39.24 -0.26 0.16 16 6 O -0.30 -0.67 10.10 -24.28 -0.25 -0.92 16 7 C 0.06 -0.05 5.12 37.16 0.19 0.14 16 8 C 0.09 -0.13 5.51 37.16 0.20 0.08 16 9 O -0.62 -0.19 8.52 -40.09 -0.34 -0.53 16 10 Si 1.29 -1.50 8.45 -169.99 -1.44 -2.94 16 11 C -0.51 0.68 8.50 101.05 0.86 1.54 16 12 C -0.51 0.31 8.50 101.05 0.86 1.17 16 13 C -0.37 0.05 0.53 -90.62 -0.05 0.01 16 14 C -0.13 -0.02 7.85 37.16 0.29 0.27 16 15 C -0.14 0.08 7.85 37.16 0.29 0.37 16 16 C -0.13 -0.08 7.85 37.16 0.29 0.21 16 17 C -0.16 -0.38 9.55 -39.41 -0.38 -0.76 16 18 C -0.04 -0.07 5.39 -104.67 -0.56 -0.63 16 19 C -0.08 -0.02 2.82 36.00 0.10 0.08 16 20 O -0.54 -0.45 12.77 -35.23 -0.45 -0.90 16 21 Si 0.95 0.11 25.07 -169.99 -4.26 -4.15 16 22 H -0.25 -0.13 7.11 56.52 0.40 0.27 16 23 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 24 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 25 C -0.20 -0.44 8.61 -39.41 -0.34 -0.78 16 26 H 0.06 -0.15 7.66 -51.93 -0.40 -0.55 16 27 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 28 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 29 H 0.14 -0.12 4.54 -52.49 -0.24 -0.36 16 30 H 0.07 -0.10 7.66 -51.93 -0.40 -0.50 16 31 H 0.07 -0.22 7.66 -51.93 -0.40 -0.62 16 32 H 0.08 -0.31 7.21 -51.93 -0.37 -0.69 16 33 H 0.07 -0.15 7.21 -51.93 -0.37 -0.52 16 34 H 0.07 -0.13 7.48 -51.93 -0.39 -0.52 16 35 H 0.07 -0.11 7.79 -51.93 -0.40 -0.51 16 36 H 0.07 -0.08 7.79 -51.93 -0.40 -0.49 16 37 H 0.07 0.01 7.79 -51.93 -0.40 -0.40 16 38 H 0.07 -0.07 7.79 -51.93 -0.40 -0.47 16 39 H 0.07 -0.07 7.48 -51.93 -0.39 -0.46 16 40 H 0.05 -0.03 7.80 -51.93 -0.40 -0.44 16 41 H 0.05 0.02 8.14 -51.93 -0.42 -0.40 16 42 H 0.06 0.03 7.97 -51.93 -0.41 -0.38 16 43 H 0.06 -0.06 7.79 -51.93 -0.40 -0.47 16 44 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 45 H 0.06 -0.07 7.80 -51.93 -0.40 -0.48 16 46 H 0.06 0.07 7.96 -51.93 -0.41 -0.34 16 47 H 0.05 0.04 8.14 -51.93 -0.42 -0.38 16 48 H 0.05 0.01 7.79 -51.93 -0.40 -0.40 16 49 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 50 H 0.12 -0.10 7.96 -51.93 -0.41 -0.51 16 51 H 0.38 -0.85 8.70 45.56 0.40 -0.45 16 52 H 0.13 0.19 4.87 -52.48 -0.26 -0.07 16 LS Contribution 410.96 15.07 6.19 6.19 Total: 0.00 -6.14 410.96 -7.43 -13.57 By element: Atomic # 1 Polarization: -3.10 SS G_CDS: -8.60 Total: -11.70 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 1.91 Total: 2.21 kcal Atomic # 8 Polarization: -1.95 SS G_CDS: -1.24 Total: -3.19 kcal Atomic # 14 Polarization: -1.39 SS G_CDS: -5.70 Total: -7.09 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -6.14 -7.43 -13.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759150_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.872 kcal (2) G-P(sol) polarization free energy of solvation -6.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds