Wall clock time and date at job start Mon Mar 8 2021 09:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38609 * 120.03002 * 0.02562 * 3 2 1 5 5 C 1.38651 * 119.89038 * 179.97438 * 4 3 2 6 6 O 1.35902 * 120.02692 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00078 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47144 * 179.97438 * 7 6 5 9 9 O 1.42904 * 109.46823 * 65.00284 * 8 7 6 10 10 Si 1.63097 * 113.99903 * 179.97438 * 9 8 7 11 11 C 1.86302 * 109.47371 * 299.99887 * 10 9 8 12 12 C 1.86302 * 109.47249 * 60.00142 * 10 9 8 13 13 C 1.86304 * 109.47229 * 179.97438 * 10 9 8 14 14 C 1.52998 * 109.46797 * 60.00364 * 13 10 9 15 15 C 1.52999 * 109.47184 * 180.02562 * 13 10 9 16 16 C 1.53001 * 109.47291 * 300.00206 * 13 10 9 17 17 C 1.38753 * 119.94702 * 0.02562 * 5 4 3 18 18 C 1.38196 * 120.05247 * 0.02562 * 17 5 4 19 19 C 1.50698 * 119.94578 * 179.97438 * 18 17 5 20 20 O 1.42910 * 109.47152 * 299.99949 * 19 18 17 21 21 Si 1.86305 * 109.47266 * 180.02562 * 19 18 17 22 22 H 1.48493 * 109.47203 * 59.99494 * 21 19 18 23 23 H 1.48501 * 109.47198 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46599 * 299.99705 * 21 19 18 25 25 C 1.38158 * 120.10844 * 359.70117 * 18 17 5 26 26 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.05157 * 359.95697 * 4 3 2 30 30 H 1.08996 * 109.47248 * 300.00331 * 7 6 5 31 31 H 1.09000 * 109.46782 * 59.99906 * 7 6 5 32 32 H 1.09002 * 109.46990 * 185.00118 * 8 7 6 33 33 H 1.08991 * 109.47263 * 305.00582 * 8 7 6 34 34 H 1.09006 * 109.46683 * 59.99797 * 11 10 9 35 35 H 1.08997 * 109.47137 * 179.97438 * 11 10 9 36 36 H 1.08996 * 109.47305 * 300.00174 * 11 10 9 37 37 H 1.09003 * 109.47363 * 59.99674 * 12 10 9 38 38 H 1.08997 * 109.47617 * 179.97438 * 12 10 9 39 39 H 1.09006 * 109.46879 * 299.99708 * 12 10 9 40 40 H 1.08994 * 109.47816 * 59.99892 * 14 13 10 41 41 H 1.09001 * 109.47344 * 180.02562 * 14 13 10 42 42 H 1.09004 * 109.47141 * 299.99571 * 14 13 10 43 43 H 1.08996 * 109.47594 * 59.99990 * 15 13 10 44 44 H 1.09001 * 109.47078 * 180.02562 * 15 13 10 45 45 H 1.09003 * 109.47142 * 299.99770 * 15 13 10 46 46 H 1.08998 * 109.46874 * 59.99500 * 16 13 10 47 47 H 1.08992 * 109.46960 * 179.97438 * 16 13 10 48 48 H 1.09003 * 109.47013 * 300.00110 * 16 13 10 49 49 H 1.07998 * 119.97215 * 180.02562 * 17 5 4 50 50 H 1.08997 * 109.47304 * 59.99744 * 19 18 17 51 51 H 0.96698 * 113.99978 * 300.00185 * 20 19 18 52 52 H 1.08005 * 119.97171 * 180.29540 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3738 0.0005 5 6 1.9239 3.6077 0.0011 6 8 1.1870 4.7495 0.0021 7 6 -0.2346 4.6042 0.0021 8 6 -0.8886 5.9874 0.0040 9 8 -0.5776 6.6629 -1.2163 10 14 -1.2240 8.1559 -1.3313 11 6 -3.0803 8.0389 -1.2255 12 6 -0.5882 9.2169 0.0619 13 6 -0.7412 8.9179 -2.9614 14 6 -1.2629 8.0468 -4.1059 15 6 -1.3470 10.3187 -3.0690 16 6 0.7834 9.0141 -3.0477 17 6 3.3098 3.6757 0.0005 18 6 4.0597 2.5149 -0.0011 19 6 5.5647 2.5916 -0.0022 20 8 6.0052 3.2897 -1.1689 21 14 6.2744 0.8691 -0.0051 22 1 5.8146 0.1463 -1.2180 23 1 7.7575 0.9447 -0.0056 24 1 5.8167 0.1433 1.2069 25 6 3.4319 1.2842 0.0041 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2129 2.3187 0.0003 30 1 -0.5438 4.0569 -0.8883 31 1 -0.5437 4.0553 0.8916 32 1 -1.9695 5.8780 0.0935 33 1 -0.5110 6.5667 0.8464 34 1 -3.3625 7.5932 -0.2715 35 1 -3.5122 9.0367 -1.3019 36 1 -3.4523 7.4182 -2.0405 37 1 0.4979 9.2854 0.0000 38 1 -1.0198 10.2148 -0.0152 39 1 -0.8704 8.7713 1.0159 40 1 -2.3489 7.9782 -4.0444 41 1 -0.9800 8.4922 -5.0596 42 1 -0.8309 7.0489 -4.0291 43 1 -0.9751 10.9391 -2.2536 44 1 -1.0649 10.7643 -4.0229 45 1 -2.4331 10.2505 -3.0073 46 1 1.2153 8.0163 -2.9708 47 1 1.0658 9.4594 -4.0016 48 1 1.1550 9.6347 -2.2323 49 1 3.8028 4.6366 0.0014 50 1 5.9022 3.1226 0.8879 51 1 5.7401 2.8729 -2.0002 52 1 4.0201 0.3785 0.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11759150_10902662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:03:09 Heat of formation + Delta-G solvation = -177.471890 kcal Electronic energy + Delta-G solvation = -28639.284292 eV Core-core repulsion = 24728.165570 eV Total energy + Delta-G solvation = -3911.118722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.187 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.68271 -39.97903 -38.93451 -37.82176 -36.83187 -36.70159 -32.12687 -31.66794 -30.30698 -29.32535 -29.05962 -28.26773 -27.83836 -27.38167 -26.67761 -24.10383 -23.57047 -21.91436 -20.41466 -19.77532 -18.13882 -18.10368 -17.92746 -17.33212 -16.88837 -16.86079 -16.35149 -16.12225 -16.06277 -15.83102 -15.67883 -15.44431 -15.00926 -14.85248 -14.75034 -14.58823 -14.06054 -13.91743 -13.57553 -13.48689 -13.36167 -13.27834 -13.17165 -13.03749 -12.96078 -12.91769 -12.54868 -12.45283 -12.40645 -12.36385 -12.22536 -12.01484 -11.83535 -11.70451 -11.69643 -11.58161 -11.45010 -11.26952 -10.45733 -10.31450 -10.05277 -9.71300 -9.07868 0.12192 0.36964 1.16137 1.47879 1.52616 1.54992 1.78498 1.90512 2.13415 2.16013 2.24919 2.47805 2.57301 3.48526 3.65624 3.83021 3.88495 4.05136 4.06465 4.10507 4.12292 4.13051 4.22606 4.28515 4.33902 4.34796 4.39108 4.46398 4.51986 4.60856 4.69504 4.73714 4.75652 4.78461 4.79273 4.80428 4.81959 4.82939 4.99562 5.08836 5.08989 5.11214 5.18332 5.20067 5.32020 5.33960 5.40364 5.42423 5.47667 5.52811 5.60179 5.65238 6.15536 6.45991 6.68571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.163 3.837 4 C -0.294 4.294 5 C 0.165 3.835 6 O -0.315 6.315 7 C 0.045 3.955 8 C 0.075 3.925 9 O -0.639 6.639 10 Si 1.316 2.684 11 C -0.514 4.514 12 C -0.520 4.520 13 C -0.385 4.385 14 C -0.136 4.136 15 C -0.140 4.140 16 C -0.136 4.136 17 C -0.175 4.175 18 C -0.040 4.040 19 C -0.079 4.079 20 O -0.548 6.548 21 Si 0.986 3.014 22 H -0.256 1.256 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.214 4.214 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.157 0.843 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.134 0.866 50 H 0.132 0.868 51 H 0.390 0.610 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 -0.908 1.589 5.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C 0.117 3.883 4 C -0.314 4.314 5 C 0.118 3.882 6 O -0.228 6.228 7 C -0.029 4.029 8 C 0.000 4.000 9 O -0.598 6.598 10 Si 1.446 2.554 11 C -0.616 4.616 12 C -0.621 4.621 13 C -0.427 4.427 14 C -0.193 4.193 15 C -0.197 4.197 16 C -0.193 4.193 17 C -0.194 4.194 18 C -0.041 4.041 19 C -0.189 4.189 20 O -0.355 6.355 21 Si 0.811 3.189 22 H -0.180 1.180 23 H -0.195 1.195 24 H -0.183 1.183 25 C -0.232 4.232 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.175 0.825 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.152 0.848 50 H 0.150 0.850 51 H 0.239 0.761 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.554 -1.519 1.883 5.157 hybrid contribution -0.933 0.569 -0.459 1.186 sum -5.488 -0.950 1.424 5.748 Atomic orbital electron populations 1.23398 0.76196 1.05816 1.02466 1.86087 1.23708 1.26518 1.88142 1.18752 0.91936 0.84311 0.93345 1.21464 1.01687 0.91241 1.16979 1.18877 0.91317 0.85047 0.92926 1.86163 1.20246 1.28660 1.87768 1.23331 0.77442 0.98785 1.03372 1.22376 1.00047 0.92027 0.85589 1.85404 1.81073 1.51915 1.41428 0.76188 0.62234 0.53190 0.63747 1.27031 1.24378 1.05243 1.04955 1.27138 1.06711 1.12078 1.16166 1.25960 0.99055 1.01883 1.15786 1.21529 1.01092 0.99099 0.97566 1.21598 1.00998 0.95054 1.02078 1.21525 0.94686 1.01498 1.01636 1.20250 0.90424 0.99450 1.09284 1.19935 0.96645 0.91324 0.96195 1.25080 0.90750 1.10445 0.92606 1.86494 1.78437 1.54542 1.16066 0.85151 0.78591 0.73943 0.81239 1.17960 1.19468 1.18304 1.20326 0.92273 0.98117 1.12502 0.91309 0.91557 0.86344 0.82526 0.90438 0.88479 0.87528 0.90858 0.90499 0.90350 0.90881 0.91742 0.90417 0.90923 0.91744 0.93496 0.92777 0.91942 0.93254 0.91536 0.92964 0.93408 0.92326 0.84817 0.85028 0.76134 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.05 16 2 O -0.33 -1.34 10.50 -92.48 -0.97 -2.31 16 3 C 0.16 0.83 6.68 22.49 0.15 0.98 16 4 C -0.29 -0.81 8.02 22.46 0.18 -0.63 16 5 C 0.16 0.88 6.68 22.49 0.15 1.03 16 6 O -0.32 -1.52 10.10 -87.80 -0.89 -2.41 16 7 C 0.05 -0.11 5.12 71.98 0.37 0.26 16 8 C 0.07 -0.29 5.51 71.98 0.40 0.10 16 9 O -0.64 -0.25 8.52 -144.34 -1.23 -1.48 16 10 Si 1.32 -3.57 8.45 68.60 0.58 -2.99 16 11 C -0.51 2.10 8.50 113.37 0.96 3.06 16 12 C -0.52 0.73 8.50 113.37 0.96 1.69 16 13 C -0.38 -0.05 0.53 -10.79 -0.01 -0.06 16 14 C -0.14 -0.11 7.85 71.98 0.56 0.46 16 15 C -0.14 0.14 7.85 71.98 0.56 0.70 16 16 C -0.14 -0.33 7.85 71.98 0.56 0.23 16 17 C -0.18 -1.03 9.55 22.38 0.21 -0.82 16 18 C -0.04 -0.17 5.39 -19.89 -0.11 -0.27 16 19 C -0.08 -0.09 2.82 71.24 0.20 0.11 16 20 O -0.55 -1.28 12.77 -148.98 -1.90 -3.19 16 21 Si 0.99 0.84 25.07 68.60 1.72 2.56 16 22 H -0.26 -0.41 7.11 99.48 0.71 0.30 16 23 H -0.27 -0.88 7.11 99.48 0.71 -0.17 16 24 H -0.26 -0.58 7.11 99.48 0.71 0.13 16 25 C -0.21 -1.11 8.61 22.38 0.19 -0.92 16 26 H 0.07 -0.46 7.66 -2.39 -0.02 -0.48 16 27 H 0.07 -0.40 7.66 -2.39 -0.02 -0.42 16 28 H 0.12 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H 0.16 -0.44 4.54 -2.91 -0.01 -0.45 16 30 H 0.08 -0.27 7.66 -2.39 -0.02 -0.28 16 31 H 0.10 -0.73 7.66 -2.39 -0.02 -0.74 16 32 H 0.11 -1.08 7.21 -2.39 -0.02 -1.10 16 33 H 0.07 -0.38 7.21 -2.39 -0.02 -0.39 16 34 H 0.08 -0.46 7.48 -2.38 -0.02 -0.48 16 35 H 0.08 -0.33 7.79 -2.39 -0.02 -0.35 16 36 H 0.07 -0.27 7.79 -2.39 -0.02 -0.29 16 37 H 0.06 0.05 7.79 -2.39 -0.02 0.03 16 38 H 0.08 -0.17 7.79 -2.39 -0.02 -0.19 16 39 H 0.07 -0.20 7.48 -2.38 -0.02 -0.22 16 40 H 0.06 -0.10 7.80 -2.39 -0.02 -0.11 16 41 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.05 0.10 7.97 -2.38 -0.02 0.08 16 43 H 0.06 -0.14 7.79 -2.39 -0.02 -0.16 16 44 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.07 -0.21 7.80 -2.39 -0.02 -0.23 16 46 H 0.05 0.21 7.96 -2.39 -0.02 0.19 16 47 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 48 H 0.06 0.08 7.79 -2.39 -0.02 0.06 16 49 H 0.13 0.81 8.06 -2.91 -0.02 0.78 16 50 H 0.13 -0.14 7.96 -2.39 -0.02 -0.16 16 51 H 0.39 -1.47 8.70 -74.06 -0.64 -2.11 16 52 H 0.13 0.50 4.87 -2.91 -0.01 0.48 16 Total: 0.00 -14.62 410.96 4.78 -9.83 By element: Atomic # 1 Polarization: -8.00 SS G_CDS: 1.00 Total: -7.00 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 6.47 Total: 6.98 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -4.99 Total: -9.38 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.30 Total: -0.43 kcal Total: -14.62 4.78 -9.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759150_10902662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.638 kcal (2) G-P(sol) polarization free energy of solvation -14.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds