Wall clock time and date at job start Mon Mar 8 2021 09:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00154 * 2 1 4 4 C 1.38618 * 120.02578 * 0.27162 * 3 2 1 5 5 C 1.38648 * 119.89175 * 180.25391 * 4 3 2 6 6 O 1.35891 * 120.03055 * 179.74905 * 5 4 3 7 7 C 1.42906 * 116.99892 * 359.72372 * 6 5 4 8 8 C 1.53001 * 109.47074 * 179.97438 * 7 6 5 9 9 H 1.09003 * 112.84746 * 43.80548 * 8 7 6 10 10 C 1.53781 * 113.61341 * 174.99918 * 8 7 6 11 11 C 1.53781 * 87.08070 * 140.06609 * 10 8 7 12 12 H 1.09002 * 113.61445 * 89.11830 * 11 10 8 13 13 O 1.42905 * 113.61505 * 219.93701 * 11 10 8 14 14 C 1.53786 * 87.17350 * 334.52830 * 11 10 8 15 15 C 1.38761 * 119.94411 * 359.47331 * 5 4 3 16 16 C 1.38196 * 120.05402 * 0.25428 * 15 5 4 17 17 C 1.50698 * 119.94804 * 179.97438 * 16 15 5 18 18 O 1.42904 * 109.46940 * 64.99767 * 17 16 15 19 19 Si 1.86298 * 109.47490 * 184.99931 * 17 16 15 20 20 C 1.38163 * 120.10648 * 0.02562 * 16 15 5 21 21 H 1.09002 * 109.47573 * 300.00332 * 1 2 3 22 22 H 1.09001 * 109.47149 * 60.00713 * 1 2 3 23 23 H 1.09001 * 109.47305 * 180.02562 * 1 2 3 24 24 H 1.08006 * 120.05482 * 359.97438 * 4 3 2 25 25 H 1.09002 * 109.46916 * 60.00035 * 7 6 5 26 26 H 1.08998 * 109.46991 * 300.00130 * 7 6 5 27 27 H 1.08999 * 113.61181 * 25.51665 * 10 8 7 28 28 H 1.08998 * 113.61680 * 254.61217 * 10 8 7 29 29 H 0.96696 * 114.00145 * 178.47219 * 13 11 10 30 30 H 1.08992 * 113.61675 * 140.02412 * 14 11 10 31 31 H 1.09000 * 113.60973 * 270.92699 * 14 11 10 32 32 H 1.07995 * 119.97132 * 180.27336 * 15 5 4 33 33 H 1.08997 * 109.46632 * 304.99977 * 17 16 15 34 34 H 0.96695 * 114.00024 * 180.02562 * 18 17 16 35 35 H 1.48490 * 110.00018 * 178.68045 * 19 17 16 36 36 H 1.48501 * 109.99585 * 300.00142 * 19 17 16 37 37 H 1.08004 * 119.96686 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3737 0.0057 5 6 1.9239 3.6076 0.0003 6 8 1.1871 4.7494 0.0007 7 6 -0.2346 4.6041 0.0007 8 6 -0.8886 5.9873 0.0018 9 1 -0.4142 6.6804 -0.6930 10 6 -2.4209 5.9443 -0.1210 11 6 -2.4569 7.0852 0.9094 12 1 -2.4113 8.0785 0.4628 13 8 -3.5073 6.9564 1.8698 14 6 -1.0968 6.5726 1.4115 15 6 3.3098 3.6757 0.0004 16 6 4.0598 2.5149 0.0004 17 6 5.5648 2.5915 -0.0001 18 8 6.0119 3.1848 1.2206 19 14 6.2740 0.8756 -0.1530 20 6 3.4319 1.2841 -0.0001 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 0.2129 2.3188 0.0097 25 1 -0.5438 4.0557 0.8905 26 1 -0.5437 4.0563 -0.8895 27 1 -2.8619 5.0153 0.2405 28 1 -2.7884 6.2334 -1.1056 29 1 -3.5208 7.6585 2.5345 30 1 -0.3960 7.3685 1.6633 31 1 -1.1766 5.8151 2.1913 32 1 3.8028 4.6365 0.0007 33 1 5.8973 3.1985 -0.8422 34 1 6.9730 3.2665 1.2893 35 1 7.7572 0.9403 -0.1867 36 1 5.8279 0.0381 0.9893 37 1 4.0202 0.3784 -0.0005 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11759150_11354860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:14:11 Heat of formation + Delta-G solvation = -98.824230 kcal Electronic energy + Delta-G solvation = -20265.531615 eV Core-core repulsion = 16976.416749 eV Total energy + Delta-G solvation = -3289.114866 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 267.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76386 -40.57524 -39.61016 -38.75458 -37.06639 -36.00647 -32.20140 -31.46397 -29.51325 -28.08976 -26.76891 -26.68358 -23.79620 -23.58944 -21.87879 -20.65694 -19.43988 -18.66780 -18.58118 -17.89825 -17.46916 -17.14004 -17.07565 -16.63998 -16.26528 -15.93634 -15.68639 -15.45335 -15.04909 -14.56770 -14.14609 -13.88339 -13.70802 -13.49964 -13.47535 -12.97777 -12.71408 -12.64322 -12.57011 -12.30918 -12.10406 -11.90025 -11.82662 -11.56079 -11.22512 -10.77758 -10.53267 -9.77071 -9.12594 -4.91778 0.07162 0.32955 1.25608 1.59292 1.92357 2.01620 2.20395 2.49964 3.25707 3.37138 3.41448 3.52522 3.67980 3.76508 3.80473 3.91087 3.97086 4.03269 4.17735 4.20511 4.24333 4.30158 4.31532 4.34585 4.37296 4.60498 4.66788 4.71219 4.71939 4.76890 4.95335 5.06659 5.09713 5.11735 5.30475 5.34365 5.45453 6.09741 6.39268 6.58182 6.84004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.164 3.836 4 C -0.294 4.294 5 C 0.162 3.838 6 O -0.320 6.320 7 C 0.066 3.934 8 C -0.105 4.105 9 H 0.110 0.890 10 C -0.119 4.119 11 C 0.074 3.926 12 H 0.099 0.901 13 O -0.582 6.582 14 C -0.166 4.166 15 C -0.177 4.177 16 C -0.003 4.003 17 C -0.085 4.085 18 O -0.556 6.556 19 Si 0.763 3.237 20 C -0.201 4.201 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.121 0.879 24 H 0.154 0.846 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.395 0.605 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.105 0.895 34 H 0.398 0.602 35 H -0.277 1.277 36 H -0.303 1.303 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 0.963 -3.289 3.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.118 3.882 4 C -0.314 4.314 5 C 0.116 3.884 6 O -0.233 6.233 7 C -0.009 4.009 8 C -0.123 4.123 9 H 0.128 0.872 10 C -0.156 4.156 11 C 0.016 3.984 12 H 0.117 0.883 13 O -0.390 6.390 14 C -0.203 4.203 15 C -0.196 4.196 16 C -0.003 4.003 17 C -0.193 4.193 18 O -0.366 6.366 19 Si 0.668 3.332 20 C -0.219 4.219 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.140 0.860 24 H 0.172 0.828 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.245 0.755 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.122 0.878 34 H 0.248 0.752 35 H -0.203 1.203 36 H -0.230 1.230 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.936 -0.131 -3.174 3.720 hybrid contribution 0.436 1.220 1.262 1.809 sum -1.499 1.090 -1.912 2.663 Atomic orbital electron populations 1.23399 0.76237 1.05933 1.02285 1.86086 1.23599 1.26267 1.88072 1.18704 0.91861 0.84313 0.93344 1.21461 1.01585 0.91401 1.16922 1.18804 0.91164 0.84991 0.93467 1.86080 1.20265 1.28972 1.88028 1.23009 0.76863 0.98690 1.02299 1.22357 0.95456 0.95623 0.98897 0.87199 1.23062 0.93404 0.99391 0.99732 1.23409 0.85730 0.99039 0.90269 0.88329 1.86472 1.53118 1.54974 1.44440 1.23811 0.98299 1.01502 0.96735 1.20268 0.90449 0.99453 1.09446 1.18927 0.94297 0.91513 0.95563 1.24996 0.93302 1.11085 0.89933 1.86548 1.29113 1.82632 1.38351 0.93938 0.77204 0.74438 0.87604 1.20289 0.92072 0.98030 1.11491 0.92026 0.91254 0.86037 0.82827 0.91516 0.90315 0.89294 0.89008 0.75494 0.90675 0.90085 0.84871 0.87754 0.75154 1.20319 1.23046 0.84033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 2 O -0.33 -1.60 10.50 -92.40 -0.97 -2.57 16 3 C 0.16 1.04 6.68 22.49 0.15 1.19 16 4 C -0.29 -1.32 8.02 22.46 0.18 -1.14 16 5 C 0.16 1.09 6.68 22.49 0.15 1.24 16 6 O -0.32 -1.78 10.14 -92.32 -0.94 -2.71 16 7 C 0.07 -0.02 4.58 71.98 0.33 0.31 16 8 C -0.10 0.21 4.01 -10.18 -0.04 0.17 16 9 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 10 C -0.12 0.32 7.47 31.12 0.23 0.55 16 11 C 0.07 -0.14 5.20 31.12 0.16 0.02 16 12 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 13 O -0.58 -0.52 13.67 -148.98 -2.04 -2.56 16 14 C -0.17 0.17 7.48 31.21 0.23 0.40 16 15 C -0.18 -1.30 9.62 22.38 0.22 -1.09 16 16 C 0.00 -0.02 5.38 -19.89 -0.11 -0.12 16 17 C -0.08 -0.14 2.79 71.24 0.20 0.06 16 18 O -0.56 -2.23 12.81 -148.98 -1.91 -4.14 16 19 Si 0.76 0.13 29.85 68.60 2.05 2.18 16 20 C -0.20 -1.29 8.60 22.38 0.19 -1.09 16 21 H 0.06 -0.25 7.65 -2.39 -0.02 -0.27 16 22 H 0.07 -0.37 7.67 -2.39 -0.02 -0.39 16 23 H 0.12 -0.82 8.14 -2.39 -0.02 -0.83 16 24 H 0.15 -0.05 4.54 -2.91 -0.01 -0.07 16 25 H 0.07 -0.05 7.36 -2.39 -0.02 -0.07 16 26 H 0.08 -0.23 7.67 -2.39 -0.02 -0.25 16 27 H 0.09 -0.15 8.10 -2.39 -0.02 -0.17 16 28 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.39 -2.70 9.12 -74.06 -0.68 -3.37 16 30 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.08 0.08 7.91 -2.39 -0.02 0.06 16 32 H 0.13 0.88 8.06 -2.91 -0.02 0.85 16 33 H 0.10 -0.33 7.96 -2.39 -0.02 -0.35 16 34 H 0.40 -1.91 8.74 -74.06 -0.65 -2.55 16 35 H -0.28 -0.78 7.11 99.48 0.71 -0.07 16 36 H -0.30 -2.50 7.05 99.48 0.70 -1.80 16 37 H 0.14 0.60 4.86 -2.91 -0.01 0.58 16 Total: 0.00 -17.32 307.81 -0.99 -18.31 By element: Atomic # 1 Polarization: -9.88 SS G_CDS: -0.19 Total: -10.07 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 3.01 Total: 1.56 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -5.85 Total: -11.97 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: 2.05 Total: 2.18 kcal Total: -17.32 -0.99 -18.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759150_11354860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.518 kcal (2) G-P(sol) polarization free energy of solvation -17.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds