Wall clock time and date at job start Mon Mar 8 2021 07:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99999 * 2 1 4 4 C 1.38749 * 120.02918 * 180.02562 * 3 2 1 5 5 C 1.38197 * 120.05273 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.94357 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47449 * 244.98578 * 6 5 4 8 8 Si 1.86300 * 109.47226 * 4.98638 * 6 5 4 9 9 C 1.38149 * 120.11403 * 0.02562 * 5 4 3 10 10 C 1.38797 * 120.05299 * 0.03346 * 9 5 4 11 11 O 1.35895 * 120.02984 * 179.97438 * 10 9 5 12 12 C 1.42901 * 117.00223 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46945 * 180.02562 * 12 11 10 14 14 H 1.08995 * 112.85019 * 316.19241 * 13 12 11 15 15 C 1.53780 * 113.69293 * 87.46919 * 13 12 11 16 16 C 1.53779 * 87.08266 * 139.98924 * 15 13 12 17 17 H 1.08999 * 113.68916 * 89.12376 * 16 15 13 18 18 O 1.42899 * 113.61228 * 220.01911 * 16 15 13 19 19 C 1.42905 * 113.99778 * 247.49468 * 18 16 15 20 20 C 1.52997 * 109.46921 * 60.00172 * 19 18 16 21 21 C 1.52999 * 109.46728 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.47264 * 300.00074 * 19 18 16 23 23 C 1.53782 * 113.61090 * 185.00422 * 13 12 11 24 24 C 1.38616 * 119.94363 * 0.23775 * 10 9 5 25 25 H 1.09009 * 109.46585 * 299.99394 * 1 2 3 26 26 H 1.08997 * 109.47528 * 59.99483 * 1 2 3 27 27 H 1.09007 * 109.46832 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.97071 * 0.03203 * 4 3 2 29 29 H 1.09003 * 109.46956 * 124.97993 * 6 5 4 30 30 H 0.96703 * 114.00354 * 179.97438 * 7 6 5 31 31 H 1.48503 * 109.99986 * 299.99916 * 8 6 5 32 32 H 1.48505 * 110.00250 * 61.31415 * 8 6 5 33 33 H 1.08000 * 119.97749 * 180.02562 * 9 5 4 34 34 H 1.08994 * 109.46713 * 60.00422 * 12 11 10 35 35 H 1.08999 * 109.47020 * 300.00336 * 12 11 10 36 36 H 1.08999 * 113.61186 * 25.43780 * 15 13 12 37 37 H 1.08997 * 113.61269 * 254.54090 * 15 13 12 38 38 H 1.09000 * 109.47140 * 60.00032 * 20 19 18 39 39 H 1.09001 * 109.47230 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47375 * 300.00014 * 20 19 18 41 41 H 1.09001 * 109.47362 * 60.00784 * 21 19 18 42 42 H 1.09002 * 109.46716 * 180.02562 * 21 19 18 43 43 H 1.09000 * 109.47486 * 300.00062 * 21 19 18 44 44 H 1.09001 * 109.46832 * 60.00108 * 22 19 18 45 45 H 1.09002 * 109.47153 * 179.97438 * 22 19 18 46 46 H 1.08996 * 109.46952 * 300.00089 * 22 19 18 47 47 H 1.08996 * 113.61865 * 105.38331 * 23 13 12 48 48 H 1.09006 * 113.69263 * 334.49130 * 23 13 12 49 49 H 1.07997 * 120.05308 * 179.74502 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4315 1.2842 -0.0005 5 6 4.0594 2.5153 -0.0011 6 6 5.5645 2.5920 -0.0022 7 8 6.0122 3.1853 1.2182 8 14 6.2737 0.8762 -0.1554 9 6 3.3098 3.6757 -0.0005 10 6 1.9235 3.6077 0.0012 11 8 1.1866 4.7494 0.0023 12 6 -0.2350 4.6041 0.0035 13 6 -0.8890 5.9873 0.0039 14 1 -0.4141 6.6799 0.6987 15 6 -1.0982 6.5724 -1.4028 16 6 -2.4583 7.0858 -0.9014 17 1 -2.4136 8.0788 -0.4540 18 8 -3.5083 6.9566 -1.8620 19 6 -4.0006 8.2038 -2.3563 20 6 -2.8617 8.9695 -3.0327 21 6 -5.1149 7.9454 -3.3725 22 6 -4.5517 9.0314 -1.1936 23 6 -2.4212 5.9441 0.1282 24 6 1.2913 2.3741 0.0075 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.0197 0.3784 -0.0015 29 1 5.8967 3.1989 -0.8446 30 1 6.9734 3.2663 1.2868 31 1 5.8282 0.0386 0.9871 32 1 5.8414 0.2602 -1.4356 33 1 3.8028 4.6366 -0.0014 34 1 -0.5433 4.0558 0.8936 35 1 -0.5450 4.0562 -0.8863 36 1 -1.1778 5.8154 -2.1830 37 1 -0.3965 7.3679 -1.6535 38 1 -2.4691 8.3798 -3.8611 39 1 -3.2373 9.9206 -3.4101 40 1 -2.0675 9.1534 -2.3091 41 1 -5.9264 7.3997 -2.8910 42 1 -5.4900 8.8967 -3.7498 43 1 -4.7218 7.3559 -4.2008 44 1 -3.7575 9.2154 -0.4700 45 1 -4.9268 9.9829 -1.5706 46 1 -5.3631 8.4859 -0.7118 47 1 -2.7878 6.2325 1.1133 48 1 -2.8640 5.0158 -0.2331 49 1 0.2128 2.3191 0.0130 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_11759150_14598386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:54:30 Heat of formation + Delta-G solvation = -101.837752 kcal Electronic energy + Delta-G solvation = -27668.895489 eV Core-core repulsion = 23757.499471 eV Total energy + Delta-G solvation = -3911.396018 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.186 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70846 -40.96194 -39.83942 -38.81677 -38.14450 -36.80877 -33.94383 -32.09787 -31.40403 -29.61747 -28.50785 -28.43266 -28.01243 -26.70580 -26.61168 -23.93854 -23.51861 -21.90815 -20.86611 -20.71321 -19.35255 -18.43155 -18.13082 -17.65165 -17.46113 -17.09556 -17.02212 -16.68676 -16.52537 -16.06176 -15.76313 -15.50442 -15.36116 -15.11663 -14.58737 -14.48013 -14.25415 -13.89825 -13.73498 -13.54725 -13.51796 -13.37642 -13.24855 -13.10706 -12.89780 -12.76183 -12.71959 -12.67002 -12.43835 -12.24849 -12.15866 -12.01943 -11.87561 -11.75535 -11.61536 -11.36752 -11.22801 -10.39664 -10.31623 -9.66506 -9.00689 -4.92392 0.17862 0.45954 1.30006 1.70716 2.02639 2.06254 2.19308 2.61607 2.68916 3.37962 3.42267 3.48533 3.68858 3.71087 3.78712 3.81929 3.84554 3.91129 3.99060 4.02769 4.03879 4.09381 4.12709 4.14739 4.17798 4.31309 4.34962 4.35730 4.44962 4.48217 4.52004 4.59595 4.68484 4.70759 4.71839 4.72581 4.77316 4.84140 4.87010 4.94616 5.05391 5.08847 5.15996 5.22916 5.24824 5.26336 5.31593 5.41537 5.54034 6.13959 6.36386 6.46385 6.63846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.174 3.826 4 C -0.196 4.196 5 C 0.002 3.998 6 C -0.072 4.072 7 O -0.543 6.543 8 Si 0.686 3.314 9 C -0.159 4.159 10 C 0.174 3.826 11 O -0.306 6.306 12 C 0.071 3.929 13 C -0.110 4.110 14 H 0.105 0.895 15 C -0.148 4.148 16 C 0.062 3.938 17 H 0.093 0.907 18 O -0.362 6.362 19 C 0.105 3.895 20 C -0.177 4.177 21 C -0.139 4.139 22 C -0.179 4.179 23 C -0.127 4.127 24 C -0.294 4.294 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.080 0.920 30 H 0.384 0.616 31 H -0.249 1.249 32 H -0.253 1.253 33 H 0.138 0.862 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 1.988 -0.805 2.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.128 3.872 4 C -0.214 4.214 5 C 0.001 3.999 6 C -0.182 4.182 7 O -0.349 6.349 8 Si 0.587 3.413 9 C -0.178 4.178 10 C 0.128 3.872 11 O -0.219 6.219 12 C -0.004 4.004 13 C -0.128 4.128 14 H 0.124 0.876 15 C -0.185 4.185 16 C 0.005 3.995 17 H 0.111 0.889 18 O -0.281 6.281 19 C 0.066 3.934 20 C -0.234 4.234 21 C -0.196 4.196 22 C -0.237 4.237 23 C -0.165 4.165 24 C -0.314 4.314 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.123 0.877 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.232 0.768 31 H -0.174 1.174 32 H -0.178 1.178 33 H 0.155 0.845 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.111 0.889 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.695 0.985 -0.840 1.470 hybrid contribution -0.849 0.574 0.023 1.025 sum -1.544 1.559 -0.817 2.341 Atomic orbital electron populations 1.23138 0.77806 1.04493 1.01520 1.86104 1.21880 1.26473 1.88156 1.18513 0.91479 0.83920 0.93265 1.20001 0.91756 0.97424 1.12203 1.18815 0.93500 0.91626 0.95923 1.24686 0.93088 1.10277 0.90182 1.86499 1.27567 1.84183 1.36670 0.95533 0.89953 0.74992 0.80835 1.20134 0.89977 0.99228 1.08415 1.18676 0.91017 0.84537 0.93000 1.86102 1.19127 1.28756 1.87924 1.22847 0.77913 0.98079 1.01563 1.22323 0.95327 0.95854 0.99318 0.87633 1.23616 0.97012 1.01425 0.96472 1.23564 0.87192 0.98619 0.90170 0.88921 1.88032 1.52552 1.29057 1.58473 1.21545 0.93845 0.84408 0.93633 1.22472 0.98562 1.00857 1.01509 1.21771 0.97221 1.02441 0.98186 1.22471 1.01800 1.00739 0.98643 1.23232 0.93775 1.00020 0.99427 1.21305 1.00681 0.91899 1.17467 0.92424 0.92414 0.87699 0.85416 0.90253 0.76845 1.17359 1.17824 0.84452 0.91691 0.91638 0.89126 0.90825 0.91672 0.91495 0.92263 0.91768 0.91027 0.91771 0.92219 0.91312 0.91601 0.90334 0.88866 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.31 -1.18 10.50 -19.42 -0.20 -1.38 16 3 C 0.17 0.76 6.68 -39.24 -0.26 0.50 16 4 C -0.20 -0.93 8.60 -39.41 -0.34 -1.26 16 5 C 0.00 0.01 5.38 -104.67 -0.56 -0.56 16 6 C -0.07 -0.07 2.79 36.01 0.10 0.03 16 7 O -0.54 -0.50 12.81 -35.23 -0.45 -0.96 16 8 Si 0.69 -0.04 29.84 -169.99 -5.07 -5.11 16 9 C -0.16 -0.63 9.62 -39.41 -0.38 -1.01 16 10 C 0.17 0.66 6.68 -39.24 -0.26 0.40 16 11 O -0.31 -0.94 10.14 -19.41 -0.20 -1.13 16 12 C 0.07 0.03 4.58 37.16 0.17 0.20 16 13 C -0.11 0.05 4.01 -89.81 -0.36 -0.31 16 14 H 0.11 -0.05 8.14 -51.93 -0.42 -0.48 16 15 C -0.15 0.00 7.47 -25.92 -0.19 -0.20 16 16 C 0.06 0.00 2.82 -25.92 -0.07 -0.08 16 17 H 0.09 -0.08 5.54 -51.93 -0.29 -0.37 16 18 O -0.36 -0.60 10.00 -35.23 -0.35 -0.96 16 19 C 0.10 0.02 1.11 -90.62 -0.10 -0.08 16 20 C -0.18 0.08 8.38 37.16 0.31 0.39 16 21 C -0.14 0.04 8.84 37.16 0.33 0.37 16 22 C -0.18 0.13 8.38 37.16 0.31 0.44 16 23 C -0.13 0.11 7.47 -25.92 -0.19 -0.09 16 24 C -0.29 -0.91 8.02 -39.29 -0.32 -1.22 16 25 H 0.06 -0.07 7.65 -51.92 -0.40 -0.47 16 26 H 0.06 -0.07 7.68 -51.93 -0.40 -0.47 16 27 H 0.10 -0.22 8.14 -51.92 -0.42 -0.64 16 28 H 0.13 0.58 4.86 -52.49 -0.26 0.33 16 29 H 0.08 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H 0.38 -1.69 8.74 45.56 0.40 -1.29 16 31 H -0.25 -0.83 7.05 56.52 0.40 -0.43 16 32 H -0.25 -0.65 7.11 56.52 0.40 -0.24 16 33 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.06 -0.03 7.65 -51.93 -0.40 -0.43 16 35 H 0.07 -0.01 7.38 -51.93 -0.38 -0.39 16 36 H 0.09 0.07 7.90 -51.93 -0.41 -0.34 16 37 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 40 H 0.06 -0.03 7.02 -51.93 -0.36 -0.40 16 41 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 42 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 43 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 44 H 0.06 -0.06 6.24 -51.93 -0.32 -0.38 16 45 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 46 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 47 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 48 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 49 H 0.14 0.11 4.54 -52.49 -0.24 -0.13 16 LS Contribution 386.97 15.07 5.83 5.83 Total: 0.00 -7.09 386.97 -9.44 -16.53 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: -8.17 Total: -11.32 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.83 Total: -1.50 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -1.20 Total: -4.43 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: -5.07 Total: -5.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -7.09 -9.44 -16.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759150_14598386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.310 kcal (2) G-P(sol) polarization free energy of solvation -7.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds