Wall clock time and date at job start Mon Mar 8 2021 07:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99999 * 2 1 4 4 C 1.38749 * 120.02918 * 180.02562 * 3 2 1 5 5 C 1.38197 * 120.05273 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.94357 * 180.02562 * 5 4 3 7 7 O 1.42895 * 109.47449 * 244.98578 * 6 5 4 8 8 Si 1.86300 * 109.47226 * 4.98638 * 6 5 4 9 9 C 1.38149 * 120.11403 * 0.02562 * 5 4 3 10 10 C 1.38797 * 120.05299 * 0.03346 * 9 5 4 11 11 O 1.35895 * 120.02984 * 179.97438 * 10 9 5 12 12 C 1.42901 * 117.00223 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46945 * 180.02562 * 12 11 10 14 14 H 1.08995 * 112.85019 * 316.19241 * 13 12 11 15 15 C 1.53780 * 113.69293 * 87.46919 * 13 12 11 16 16 C 1.53779 * 87.08266 * 139.98924 * 15 13 12 17 17 H 1.08999 * 113.68916 * 89.12376 * 16 15 13 18 18 O 1.42899 * 113.61228 * 220.01911 * 16 15 13 19 19 C 1.42905 * 113.99778 * 247.49468 * 18 16 15 20 20 C 1.52997 * 109.46921 * 60.00172 * 19 18 16 21 21 C 1.52999 * 109.46728 * 179.97438 * 19 18 16 22 22 C 1.52997 * 109.47264 * 300.00074 * 19 18 16 23 23 C 1.53782 * 113.61090 * 185.00422 * 13 12 11 24 24 C 1.38616 * 119.94363 * 0.23775 * 10 9 5 25 25 H 1.09009 * 109.46585 * 299.99394 * 1 2 3 26 26 H 1.08997 * 109.47528 * 59.99483 * 1 2 3 27 27 H 1.09007 * 109.46832 * 180.02562 * 1 2 3 28 28 H 1.07999 * 119.97071 * 0.03203 * 4 3 2 29 29 H 1.09003 * 109.46956 * 124.97993 * 6 5 4 30 30 H 0.96703 * 114.00354 * 179.97438 * 7 6 5 31 31 H 1.48503 * 109.99986 * 299.99916 * 8 6 5 32 32 H 1.48505 * 110.00250 * 61.31415 * 8 6 5 33 33 H 1.08000 * 119.97749 * 180.02562 * 9 5 4 34 34 H 1.08994 * 109.46713 * 60.00422 * 12 11 10 35 35 H 1.08999 * 109.47020 * 300.00336 * 12 11 10 36 36 H 1.08999 * 113.61186 * 25.43780 * 15 13 12 37 37 H 1.08997 * 113.61269 * 254.54090 * 15 13 12 38 38 H 1.09000 * 109.47140 * 60.00032 * 20 19 18 39 39 H 1.09001 * 109.47230 * 179.97438 * 20 19 18 40 40 H 1.09001 * 109.47375 * 300.00014 * 20 19 18 41 41 H 1.09001 * 109.47362 * 60.00784 * 21 19 18 42 42 H 1.09002 * 109.46716 * 180.02562 * 21 19 18 43 43 H 1.09000 * 109.47486 * 300.00062 * 21 19 18 44 44 H 1.09001 * 109.46832 * 60.00108 * 22 19 18 45 45 H 1.09002 * 109.47153 * 179.97438 * 22 19 18 46 46 H 1.08996 * 109.46952 * 300.00089 * 22 19 18 47 47 H 1.08996 * 113.61865 * 105.38331 * 23 13 12 48 48 H 1.09006 * 113.69263 * 334.49130 * 23 13 12 49 49 H 1.07997 * 120.05308 * 179.74502 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4315 1.2842 -0.0005 5 6 4.0594 2.5153 -0.0011 6 6 5.5645 2.5920 -0.0022 7 8 6.0122 3.1853 1.2182 8 14 6.2737 0.8762 -0.1554 9 6 3.3098 3.6757 -0.0005 10 6 1.9235 3.6077 0.0012 11 8 1.1866 4.7494 0.0023 12 6 -0.2350 4.6041 0.0035 13 6 -0.8890 5.9873 0.0039 14 1 -0.4141 6.6799 0.6987 15 6 -1.0982 6.5724 -1.4028 16 6 -2.4583 7.0858 -0.9014 17 1 -2.4136 8.0788 -0.4540 18 8 -3.5083 6.9566 -1.8620 19 6 -4.0006 8.2038 -2.3563 20 6 -2.8617 8.9695 -3.0327 21 6 -5.1149 7.9454 -3.3725 22 6 -4.5517 9.0314 -1.1936 23 6 -2.4212 5.9441 0.1282 24 6 1.2913 2.3741 0.0075 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.0197 0.3784 -0.0015 29 1 5.8967 3.1989 -0.8446 30 1 6.9734 3.2663 1.2868 31 1 5.8282 0.0386 0.9871 32 1 5.8414 0.2602 -1.4356 33 1 3.8028 4.6366 -0.0014 34 1 -0.5433 4.0558 0.8936 35 1 -0.5450 4.0562 -0.8863 36 1 -1.1778 5.8154 -2.1830 37 1 -0.3965 7.3679 -1.6535 38 1 -2.4691 8.3798 -3.8611 39 1 -3.2373 9.9206 -3.4101 40 1 -2.0675 9.1534 -2.3091 41 1 -5.9264 7.3997 -2.8910 42 1 -5.4900 8.8967 -3.7498 43 1 -4.7218 7.3559 -4.2008 44 1 -3.7575 9.2154 -0.4700 45 1 -4.9268 9.9829 -1.5706 46 1 -5.3631 8.4859 -0.7118 47 1 -2.7878 6.2325 1.1133 48 1 -2.8640 5.0158 -0.2331 49 1 0.2128 2.3191 0.0130 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11759150_14598386.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:54:29 Heat of formation + Delta-G solvation = -98.296865 kcal Electronic energy + Delta-G solvation = -27668.741944 eV Core-core repulsion = 23757.499471 eV Total energy + Delta-G solvation = -3911.242473 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.88774 -40.98716 -39.98617 -38.92105 -38.16290 -36.90844 -33.94920 -32.28066 -31.58575 -29.66845 -28.50049 -28.37709 -28.04921 -26.71893 -26.66453 -23.98068 -23.73578 -22.04715 -20.85981 -20.69945 -19.50646 -18.47411 -18.23345 -17.70613 -17.64707 -17.22494 -17.17563 -16.76613 -16.56891 -16.08178 -15.79233 -15.61093 -15.42139 -15.19966 -14.57070 -14.50195 -14.43031 -13.99577 -13.81194 -13.62711 -13.48942 -13.33456 -13.32138 -13.07999 -12.89078 -12.76536 -12.72197 -12.67626 -12.54575 -12.32367 -12.23430 -12.14621 -11.97078 -11.73288 -11.70130 -11.37164 -11.21889 -10.39696 -10.35433 -9.86968 -9.26500 -4.96797 -0.05218 0.18490 1.25754 1.63626 1.91765 1.97827 2.08486 2.38422 2.71197 3.33945 3.39951 3.50705 3.62646 3.72620 3.72816 3.74684 3.81963 3.88409 3.93746 3.95288 4.05537 4.08369 4.09068 4.16479 4.19751 4.20427 4.28631 4.31322 4.47296 4.55371 4.59192 4.59926 4.65403 4.73121 4.74123 4.76174 4.82104 4.88965 4.91165 4.91760 4.97630 5.00618 5.09067 5.12461 5.17055 5.27340 5.30630 5.33002 5.36929 5.97980 6.27828 6.38501 6.90654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.163 3.837 4 C -0.222 4.222 5 C -0.009 4.009 6 C -0.078 4.078 7 O -0.560 6.560 8 Si 0.783 3.217 9 C -0.172 4.172 10 C 0.168 3.832 11 O -0.315 6.315 12 C 0.066 3.934 13 C -0.104 4.104 14 H 0.108 0.892 15 C -0.149 4.149 16 C 0.060 3.940 17 H 0.101 0.899 18 O -0.381 6.381 19 C 0.098 3.902 20 C -0.174 4.174 21 C -0.140 4.140 22 C -0.177 4.177 23 C -0.122 4.122 24 C -0.294 4.294 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.406 0.594 31 H -0.300 1.300 32 H -0.291 1.291 33 H 0.143 0.857 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 2.929 -0.614 2.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.117 3.883 4 C -0.240 4.240 5 C -0.009 4.009 6 C -0.188 4.188 7 O -0.371 6.371 8 Si 0.690 3.310 9 C -0.191 4.191 10 C 0.122 3.878 11 O -0.229 6.229 12 C -0.009 4.009 13 C -0.122 4.122 14 H 0.126 0.874 15 C -0.186 4.186 16 C 0.003 3.997 17 H 0.119 0.881 18 O -0.301 6.301 19 C 0.059 3.941 20 C -0.232 4.232 21 C -0.197 4.197 22 C -0.234 4.234 23 C -0.159 4.159 24 C -0.313 4.313 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.122 0.878 30 H 0.258 0.742 31 H -0.228 1.228 32 H -0.219 1.219 33 H 0.161 0.839 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.921 1.956 -0.649 2.258 hybrid contribution -0.844 0.247 -0.035 0.880 sum -1.765 2.203 -0.684 2.905 Atomic orbital electron populations 1.23433 0.75867 1.06047 1.02512 1.86081 1.24015 1.26450 1.88115 1.18700 0.91648 0.84597 0.93321 1.20182 0.92409 0.97673 1.13745 1.19192 0.95284 0.91213 0.95204 1.24819 0.91387 1.11432 0.91145 1.86444 1.29955 1.84116 1.36553 0.94632 0.87985 0.72389 0.76001 1.20312 0.90364 0.99493 1.08918 1.18834 0.91250 0.84990 0.92763 1.86094 1.20387 1.28613 1.87787 1.23032 0.76680 0.98837 1.02309 1.22282 0.95554 0.95413 0.98940 0.87374 1.23594 0.97266 1.01211 0.96555 1.23655 0.86669 0.99300 0.90108 0.88133 1.88008 1.53034 1.30068 1.58972 1.21677 0.94098 0.84204 0.94073 1.22448 0.98447 1.01051 1.01208 1.21795 0.97009 1.02976 0.97890 1.22448 1.01727 1.00877 0.98359 1.23205 0.93280 0.99687 0.99727 1.21457 1.01659 0.91207 1.16974 0.91400 0.91382 0.85986 0.86234 0.87827 0.74186 1.22835 1.21905 0.83923 0.90628 0.91158 0.90066 0.90944 0.92521 0.90556 0.92118 0.92205 0.89748 0.92461 0.91828 0.90424 0.92083 0.89270 0.89023 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.33 -2.84 10.50 -92.42 -0.97 -3.81 16 3 C 0.16 1.63 6.68 22.49 0.15 1.78 16 4 C -0.22 -2.49 8.60 22.38 0.19 -2.29 16 5 C -0.01 -0.07 5.38 -19.90 -0.11 -0.18 16 6 C -0.08 -0.14 2.79 71.24 0.20 0.05 16 7 O -0.56 -0.81 12.81 -148.98 -1.91 -2.72 16 8 Si 0.78 0.53 29.84 68.60 2.05 2.58 16 9 C -0.17 -1.49 9.62 22.38 0.22 -1.28 16 10 C 0.17 1.36 6.68 22.49 0.15 1.51 16 11 O -0.32 -1.96 10.14 -92.36 -0.94 -2.89 16 12 C 0.07 0.03 4.58 71.98 0.33 0.36 16 13 C -0.10 0.13 4.01 -10.27 -0.04 0.09 16 14 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 15 C -0.15 -0.03 7.47 31.12 0.23 0.21 16 16 C 0.06 -0.02 2.82 31.12 0.09 0.07 16 17 H 0.10 -0.22 5.54 -2.39 -0.01 -0.24 16 18 O -0.38 -1.33 10.00 -148.98 -1.49 -2.82 16 19 C 0.10 0.03 1.11 -10.80 -0.01 0.01 16 20 C -0.17 0.18 8.38 71.98 0.60 0.78 16 21 C -0.14 0.06 8.84 71.98 0.64 0.70 16 22 C -0.18 0.34 8.38 71.98 0.60 0.95 16 23 C -0.12 0.28 7.47 31.12 0.23 0.51 16 24 C -0.29 -1.94 8.02 22.46 0.18 -1.76 16 25 H 0.07 -0.20 7.65 -2.38 -0.02 -0.21 16 26 H 0.07 -0.20 7.68 -2.39 -0.02 -0.22 16 27 H 0.12 -0.56 8.14 -2.38 -0.02 -0.58 16 28 H 0.12 1.39 4.86 -2.91 -0.01 1.38 16 29 H 0.10 -0.32 7.96 -2.39 -0.02 -0.34 16 30 H 0.41 -4.02 8.74 -74.06 -0.65 -4.67 16 31 H -0.30 -2.69 7.05 99.48 0.70 -1.99 16 32 H -0.29 -1.95 7.11 99.48 0.71 -1.25 16 33 H 0.14 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.08 -0.13 7.65 -2.39 -0.02 -0.15 16 35 H 0.07 -0.04 7.38 -2.39 -0.02 -0.06 16 36 H 0.08 0.17 7.90 -2.39 -0.02 0.15 16 37 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.06 -0.08 7.02 -2.39 -0.02 -0.10 16 41 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.06 -0.18 6.24 -2.39 -0.01 -0.19 16 45 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.09 -0.16 8.10 -2.38 -0.02 -0.18 16 49 H 0.16 0.19 4.54 -2.91 -0.01 0.18 16 Total: 0.00 -17.88 386.97 1.83 -16.05 By element: Atomic # 1 Polarization: -9.32 SS G_CDS: 0.32 Total: -9.00 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 4.77 Total: 2.61 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -5.30 Total: -12.24 kcal Atomic # 14 Polarization: 0.53 SS G_CDS: 2.05 Total: 2.58 kcal Total: -17.88 1.83 -16.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759150_14598386.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.248 kcal (2) G-P(sol) polarization free energy of solvation -17.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds