Wall clock time and date at job start Mon Mar 8 2021 08:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 117.00528 * 2 1 4 4 C 1.38611 * 120.02291 * 0.02562 * 3 2 1 5 5 C 1.38658 * 119.89027 * 179.97438 * 4 3 2 6 6 O 1.35895 * 120.02837 * 179.97438 * 5 4 3 7 7 C 1.42893 * 117.00314 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47544 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46785 * 55.00192 * 8 7 6 10 10 C 1.53002 * 109.47217 * 174.99903 * 8 7 6 11 11 C 1.53006 * 109.46886 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46997 * 300.00398 * 11 10 8 13 13 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 14 14 O 1.42905 * 109.46728 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47317 * 60.00177 * 12 11 10 16 16 C 1.52996 * 109.47131 * 299.99507 * 15 12 11 17 17 C 1.38759 * 119.94107 * 0.27371 * 5 4 3 18 18 C 1.38194 * 120.05356 * 359.44718 * 17 5 4 19 19 C 1.50700 * 119.94576 * 180.27301 * 18 17 5 20 20 O 1.42901 * 109.46928 * 65.27810 * 19 18 17 21 21 Si 1.86296 * 109.47263 * 185.27619 * 19 18 17 22 22 C 1.38151 * 120.11057 * 0.55410 * 18 17 5 23 23 H 1.08998 * 109.47299 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47230 * 300.00453 * 1 2 3 25 25 H 1.09006 * 109.46457 * 59.99801 * 1 2 3 26 26 H 1.07995 * 120.05743 * 359.94928 * 4 3 2 27 27 H 1.09006 * 109.46730 * 60.00098 * 7 6 5 28 28 H 1.09001 * 109.47071 * 300.00592 * 7 6 5 29 29 H 1.08996 * 109.46698 * 60.00426 * 10 8 7 30 30 H 1.09001 * 109.47142 * 300.00372 * 10 8 7 31 31 H 1.09000 * 109.46866 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.46611 * 60.00303 * 11 10 8 33 33 H 0.96696 * 114.00036 * 179.97438 * 14 12 11 34 34 H 1.08996 * 109.46952 * 59.99813 * 15 12 11 35 35 H 1.09001 * 109.46832 * 179.97438 * 15 12 11 36 36 H 1.09000 * 109.47380 * 300.00763 * 16 15 12 37 37 H 1.09000 * 109.47054 * 180.02562 * 16 15 12 38 38 H 1.08000 * 119.96866 * 179.69968 * 17 5 4 39 39 H 1.09003 * 109.47318 * 305.28535 * 19 18 17 40 40 H 0.96703 * 114.00355 * 59.99746 * 20 19 18 41 41 H 1.48500 * 110.00128 * 180.02562 * 21 19 18 42 42 H 1.48491 * 110.00293 * 301.32104 * 21 19 18 43 43 H 1.08007 * 119.97470 * 179.74385 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2917 2.3736 0.0005 5 6 1.9242 3.6076 0.0011 6 8 1.1874 4.7494 0.0011 7 6 -0.2342 4.6043 -0.0001 8 6 -0.8882 5.9874 0.0008 9 1 -0.5100 6.5686 -0.8403 10 6 -2.4052 5.8344 -0.1262 11 6 -3.0591 7.2177 -0.1260 12 6 -2.7268 7.9386 1.1819 13 1 -3.1051 7.3579 2.0232 14 8 -3.3381 9.2304 1.1823 15 6 -1.2098 8.0917 1.3088 16 6 -0.5559 6.7085 1.3087 17 6 3.3101 3.6755 -0.0047 18 6 4.0599 2.5146 0.0006 19 6 5.5650 2.5912 0.0006 20 8 6.0118 3.1835 1.2219 21 14 6.2741 0.8753 -0.1532 22 6 3.4321 1.2840 0.0001 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8901 26 1 0.2132 2.3187 0.0001 27 1 -0.5441 4.0557 0.8895 28 1 -0.5428 4.0565 -0.8905 29 1 -2.7833 5.2532 0.7148 30 1 -2.6419 5.3211 -1.0582 31 1 -4.1399 7.1086 -0.2160 32 1 -2.6808 7.7984 -0.9673 33 1 -3.1696 9.7450 1.9834 34 1 -0.8317 8.6724 0.4675 35 1 -0.9732 8.6057 2.2404 36 1 -0.9342 6.1277 2.1499 37 1 0.5248 6.8175 1.3995 38 1 3.8032 4.6363 -0.0092 39 1 5.8979 3.1988 -0.8409 40 1 5.7509 2.6949 2.0146 41 1 7.7578 0.9371 -0.1538 42 1 5.8020 0.0280 0.9711 43 1 4.0202 0.3781 0.0000 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11759150_16737256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:41:55 Heat of formation + Delta-G solvation = -141.573571 kcal Electronic energy + Delta-G solvation = -24105.447205 eV Core-core repulsion = 20503.403351 eV Total energy + Delta-G solvation = -3602.043854 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.155 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.75352 -40.44434 -39.58820 -38.90044 -37.14340 -36.52743 -32.37309 -31.93182 -31.82119 -30.84062 -28.50069 -26.88662 -26.25542 -23.92482 -23.47139 -22.80040 -21.74219 -20.90999 -19.72921 -18.24285 -18.08718 -17.84014 -17.31409 -17.18499 -16.94431 -16.66463 -16.34231 -16.10114 -15.69403 -15.58143 -15.49633 -14.82658 -14.74341 -14.26314 -14.21412 -13.82913 -13.48931 -13.38330 -13.26013 -13.20056 -12.73637 -12.69294 -12.46544 -12.26499 -12.13441 -12.10827 -11.78007 -11.71597 -11.61999 -11.46999 -11.11334 -10.74492 -10.66810 -9.76279 -9.10427 -4.90900 0.09597 0.35083 1.27301 1.61488 1.91235 2.08562 2.23929 2.53801 3.20475 3.38170 3.56928 3.61388 3.66859 3.76011 3.81783 3.99051 4.03272 4.08212 4.12704 4.22969 4.25181 4.30235 4.32911 4.34263 4.34681 4.45608 4.46646 4.49262 4.54925 4.66709 4.72480 4.79397 4.95056 5.03939 5.05923 5.10062 5.12805 5.14389 5.17033 5.28479 5.32068 5.40692 5.48646 6.13090 6.42252 6.45619 6.83348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.164 3.836 4 C -0.293 4.293 5 C 0.163 3.837 6 O -0.321 6.321 7 C 0.059 3.941 8 C -0.084 4.084 9 H 0.074 0.926 10 C -0.102 4.102 11 C -0.114 4.114 12 C 0.101 3.899 13 H 0.064 0.936 14 O -0.591 6.591 15 C -0.147 4.147 16 C -0.109 4.109 17 C -0.178 4.178 18 C -0.037 4.037 19 C -0.082 4.082 20 O -0.544 6.544 21 Si 0.768 3.232 22 C -0.200 4.200 23 H 0.119 0.881 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.155 0.845 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.393 0.607 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.387 0.613 41 H -0.296 1.296 42 H -0.285 1.285 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 -2.701 -0.337 5.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.117 3.883 4 C -0.312 4.312 5 C 0.117 3.883 6 O -0.234 6.234 7 C -0.016 4.016 8 C -0.102 4.102 9 H 0.093 0.907 10 C -0.140 4.140 11 C -0.151 4.151 12 C 0.042 3.958 13 H 0.081 0.919 14 O -0.399 6.399 15 C -0.185 4.185 16 C -0.146 4.146 17 C -0.197 4.197 18 C -0.038 4.038 19 C -0.190 4.190 20 O -0.352 6.352 21 Si 0.673 3.327 22 C -0.218 4.218 23 H 0.138 0.862 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.172 0.828 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.242 0.758 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.236 0.764 41 H -0.224 1.224 42 H -0.211 1.211 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.556 -3.064 -0.963 4.792 hybrid contribution -0.256 0.775 1.734 1.916 sum -3.812 -2.288 0.771 4.513 Atomic orbital electron populations 1.23392 0.76274 1.05848 1.02335 1.86092 1.23577 1.26359 1.88043 1.18761 0.91987 0.84253 0.93252 1.21468 1.01639 0.91331 1.16746 1.18816 0.91136 0.84978 0.93337 1.86081 1.20377 1.29012 1.87977 1.23085 0.76897 0.98973 1.02615 1.21189 0.95629 0.94141 0.99257 0.90711 1.21434 0.92205 0.96406 1.03949 1.21470 1.01273 0.95753 0.96632 1.21922 0.91426 0.83978 0.98440 0.91852 1.86481 1.76651 1.30002 1.46788 1.22220 0.95830 0.97858 1.02623 1.21477 1.00604 0.95373 0.97168 1.20257 0.90480 0.99397 1.09578 1.19817 0.96164 0.91482 0.96329 1.25265 0.91264 1.12380 0.90127 1.86584 1.78696 1.53836 1.16116 0.93807 0.76418 0.73542 0.88886 1.20341 0.91999 0.98117 1.11341 0.86248 0.91738 0.91397 0.82751 0.90764 0.90545 0.90127 0.89702 0.91015 0.92088 0.75754 0.92183 0.90873 0.91042 0.92005 0.85257 0.85087 0.76388 1.22443 1.21134 0.83851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -0.74 10.50 -92.39 -0.97 -1.71 16 3 C 0.16 0.53 6.68 22.49 0.15 0.68 16 4 C -0.29 -0.44 8.02 22.46 0.18 -0.26 16 5 C 0.16 0.66 6.68 22.50 0.15 0.81 16 6 O -0.32 -1.08 9.67 -92.37 -0.89 -1.98 16 7 C 0.06 -0.17 4.12 71.98 0.30 0.13 16 8 C -0.08 0.25 2.43 -10.79 -0.03 0.22 16 9 H 0.07 -0.04 8.14 -2.38 -0.02 -0.06 16 10 C -0.10 0.54 5.20 30.60 0.16 0.70 16 11 C -0.11 0.16 5.57 30.60 0.17 0.33 16 12 C 0.10 -0.09 3.47 30.59 0.11 0.01 16 13 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 14 O -0.59 -1.22 13.32 -148.98 -1.98 -3.21 16 15 C -0.15 0.22 5.55 30.59 0.17 0.39 16 16 C -0.11 0.20 5.10 30.59 0.16 0.36 16 17 C -0.18 -0.86 9.62 22.38 0.22 -0.65 16 18 C -0.04 -0.10 5.34 -19.90 -0.11 -0.21 16 19 C -0.08 -0.08 2.80 71.24 0.20 0.12 16 20 O -0.54 -2.11 12.84 -148.98 -1.91 -4.02 16 21 Si 0.77 -0.27 29.88 68.60 2.05 1.78 16 22 C -0.20 -0.58 8.60 22.38 0.19 -0.39 16 23 H 0.12 -1.03 8.14 -2.39 -0.02 -1.05 16 24 H 0.06 -0.45 7.66 -2.39 -0.02 -0.47 16 25 H 0.07 -0.50 7.66 -2.38 -0.02 -0.52 16 26 H 0.16 -0.53 4.54 -2.91 -0.01 -0.54 16 27 H 0.07 -0.37 7.66 -2.38 -0.02 -0.39 16 28 H 0.08 -0.40 7.66 -2.39 -0.02 -0.42 16 29 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.39 -2.19 9.08 -74.06 -0.67 -2.86 16 34 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 35 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 37 H 0.06 0.07 7.82 -2.39 -0.02 0.05 16 38 H 0.13 0.69 8.06 -2.91 -0.02 0.67 16 39 H 0.13 -0.13 7.96 -2.39 -0.02 -0.15 16 40 H 0.39 -0.64 8.70 -74.05 -0.64 -1.28 16 41 H -0.30 -1.90 7.11 99.48 0.71 -1.19 16 42 H -0.28 -1.09 7.00 99.48 0.70 -0.40 16 43 H 0.14 0.10 4.83 -2.91 -0.01 0.08 16 Total: 0.00 -15.45 342.38 -0.85 -16.30 By element: Atomic # 1 Polarization: -10.17 SS G_CDS: -0.27 Total: -10.43 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 3.13 Total: 3.28 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -5.76 Total: -10.92 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: 2.05 Total: 1.78 kcal Total: -15.45 -0.85 -16.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759150_16737256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.270 kcal (2) G-P(sol) polarization free energy of solvation -15.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds