Wall clock time and date at job start Mon Mar 8 2021 08:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35894 * 117.00123 * 2 1 4 4 C 1.38612 * 120.02700 * 359.71963 * 3 2 1 5 5 C 1.38660 * 119.88912 * 179.81881 * 4 3 2 6 6 O 1.35899 * 120.02651 * 180.18280 * 5 4 3 7 7 C 1.42901 * 116.99670 * 0.23497 * 6 5 4 8 8 C 1.53008 * 109.46830 * 179.97438 * 7 6 5 9 9 H 1.09002 * 112.84820 * 316.19754 * 8 7 6 10 10 C 1.53775 * 113.61429 * 87.49914 * 8 7 6 11 11 C 1.53783 * 87.08314 * 89.11649 * 10 8 7 12 12 O 1.42900 * 113.69078 * 270.87768 * 11 10 8 13 13 C 1.42899 * 113.99961 * 162.74159 * 12 11 10 14 14 C 1.52998 * 113.61915 * 139.97955 * 11 10 8 15 15 F 1.39905 * 109.46739 * 327.20137 * 14 11 10 16 16 F 1.39901 * 109.46990 * 87.19486 * 14 11 10 17 17 F 1.39896 * 109.47295 * 207.20032 * 14 11 10 18 18 C 1.53774 * 113.61512 * 184.99863 * 8 7 6 19 19 C 1.38749 * 119.94872 * 0.41568 * 5 4 3 20 20 C 1.38201 * 120.05031 * 359.81731 * 19 5 4 21 21 C 1.50701 * 119.94429 * 179.97438 * 20 19 5 22 22 O 1.42907 * 109.47196 * 65.02105 * 21 20 19 23 23 Si 1.86301 * 109.47327 * 185.01854 * 21 20 19 24 24 C 1.38158 * 120.11123 * 359.97438 * 20 19 5 25 25 H 1.08994 * 109.47526 * 300.00493 * 1 2 3 26 26 H 1.09008 * 109.46720 * 60.00483 * 1 2 3 27 27 H 1.09004 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.08001 * 120.05633 * 0.02562 * 4 3 2 29 29 H 1.08991 * 109.46990 * 299.98994 * 7 6 5 30 30 H 1.09000 * 109.47668 * 60.00030 * 7 6 5 31 31 H 1.09004 * 113.61708 * 203.66785 * 10 8 7 32 32 H 1.09004 * 113.61862 * 334.56844 * 10 8 7 33 33 H 1.09000 * 109.47066 * 64.84061 * 13 12 11 34 34 H 1.09005 * 109.47051 * 184.83639 * 13 12 11 35 35 H 1.08998 * 109.47394 * 304.83836 * 13 12 11 36 36 H 1.09004 * 113.61772 * 25.43009 * 18 8 7 37 37 H 1.08997 * 113.61763 * 156.24934 * 18 8 7 38 38 H 1.07997 * 119.97845 * 179.78975 * 19 5 4 39 39 H 1.08993 * 109.46980 * 305.01849 * 21 20 19 40 40 H 0.96695 * 114.00130 * 59.99525 * 22 21 20 41 41 H 1.48496 * 110.00358 * 180.02562 * 23 21 20 42 42 H 1.48507 * 109.99915 * 301.32239 * 23 21 20 43 43 H 1.08001 * 119.96933 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2916 2.3737 -0.0059 5 6 1.9241 3.6076 -0.0021 6 8 1.1872 4.7495 -0.0040 7 6 -0.2344 4.6041 -0.0049 8 6 -0.8884 5.9874 -0.0065 9 1 -0.4144 6.6805 0.6886 10 6 -1.0952 6.5694 -1.4147 11 6 -2.4620 5.8644 -1.4199 12 8 -2.4170 4.5284 -1.9249 13 6 -3.5587 3.7395 -1.5841 14 6 -3.5800 6.6994 -2.0474 15 9 -3.3475 8.0555 -1.7938 16 9 -3.6058 6.4811 -3.4290 17 9 -4.8087 6.3253 -1.4930 18 6 -2.4207 5.9444 0.1153 19 6 3.3099 3.6756 -0.0011 20 6 4.0598 2.5148 -0.0001 21 6 5.5648 2.5914 0.0003 22 8 6.0112 3.1847 1.2214 23 14 6.2742 0.8755 -0.1520 24 6 3.4319 1.2841 0.0004 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2130 2.3187 -0.0100 29 1 -0.5429 4.0551 -0.8944 30 1 -0.5443 4.0571 0.8855 31 1 -1.1648 7.6571 -1.4319 32 1 -0.3988 6.1772 -2.1560 33 1 -4.4451 4.1585 -2.0603 34 1 -3.4098 2.7165 -1.9298 35 1 -3.6920 3.7416 -0.5023 36 1 -2.7946 5.0475 0.6093 37 1 -2.8527 6.8606 0.5179 38 1 3.8030 4.6365 -0.0016 39 1 5.8979 3.1983 -0.8415 40 1 5.7501 2.6966 2.0143 41 1 7.7578 0.9373 -0.1521 42 1 5.8016 0.0289 0.9729 43 1 4.0202 0.3783 0.0008 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11759150_17321602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:55:29 Heat of formation + Delta-G solvation = -230.120705 kcal Electronic energy + Delta-G solvation = -32240.550024 eV Core-core repulsion = 27226.304552 eV Total energy + Delta-G solvation = -5014.245473 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.127 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.26691 -48.80170 -48.73986 -41.90317 -41.27735 -39.75317 -38.89296 -37.25977 -36.72037 -32.09465 -31.56003 -30.30710 -28.54482 -28.14581 -27.18282 -26.76262 -26.57608 -23.57704 -23.51715 -22.15437 -20.62981 -19.93543 -19.61673 -19.53164 -19.24837 -18.00486 -17.85472 -17.35237 -17.27057 -17.00567 -16.87757 -16.56563 -16.46623 -16.09898 -15.93270 -15.66740 -15.61500 -15.58951 -15.56101 -15.18913 -14.98960 -14.91302 -14.72289 -14.29962 -14.24785 -14.06455 -13.83850 -13.30636 -13.26970 -13.15707 -12.89727 -12.69083 -12.53373 -12.44159 -12.13373 -12.08800 -11.91603 -11.76168 -11.61855 -11.51315 -10.82546 -10.65310 -9.74136 -9.08443 -4.89548 0.11656 0.37119 1.28717 1.52026 1.62546 1.90673 2.02042 2.08596 2.25238 2.55229 2.55883 2.61370 2.88216 3.29316 3.34424 3.40298 3.48839 3.58286 3.74415 3.84017 4.03074 4.07690 4.22095 4.23178 4.25229 4.28455 4.33979 4.35149 4.36297 4.46414 4.48392 4.50312 4.62233 4.67400 4.69296 4.73492 4.79453 4.82034 5.00991 5.12650 5.17234 5.33240 5.49746 5.69987 6.13792 6.43275 6.47618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.163 3.837 4 C -0.291 4.291 5 C 0.164 3.836 6 O -0.319 6.319 7 C 0.066 3.934 8 C -0.094 4.094 9 H 0.113 0.887 10 C -0.115 4.115 11 C 0.038 3.962 12 O -0.345 6.345 13 C 0.003 3.997 14 C 0.432 3.568 15 F -0.177 7.177 16 F -0.188 7.188 17 F -0.184 7.184 18 C -0.133 4.133 19 C -0.176 4.176 20 C -0.038 4.038 21 C -0.080 4.080 22 O -0.544 6.544 23 Si 0.766 3.234 24 C -0.200 4.200 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.154 0.846 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.042 0.958 34 H 0.116 0.884 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.387 0.613 41 H -0.297 1.297 42 H -0.285 1.285 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 -2.603 1.205 4.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.117 3.883 4 C -0.311 4.311 5 C 0.118 3.882 6 O -0.233 6.233 7 C -0.008 4.008 8 C -0.113 4.113 9 H 0.131 0.869 10 C -0.152 4.152 11 C -0.005 4.005 12 O -0.263 6.263 13 C -0.093 4.093 14 C 0.377 3.623 15 F -0.159 7.159 16 F -0.170 7.170 17 F -0.166 7.166 18 C -0.170 4.170 19 C -0.195 4.195 20 C -0.038 4.038 21 C -0.189 4.189 22 O -0.352 6.352 23 Si 0.671 3.329 24 C -0.218 4.218 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.171 0.829 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.108 0.892 33 H 0.061 0.939 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.236 0.764 41 H -0.225 1.225 42 H -0.211 1.211 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.847 -2.833 1.029 4.146 hybrid contribution -1.240 0.671 0.909 1.677 sum -4.087 -2.162 1.937 5.013 Atomic orbital electron populations 1.23386 0.76316 1.05808 1.02307 1.86090 1.23566 1.26389 1.88066 1.18754 0.91979 0.84235 0.93313 1.21457 1.01572 0.91382 1.16640 1.18785 0.91101 0.84878 0.93417 1.86046 1.20103 1.29063 1.88056 1.22903 0.76983 0.97738 1.03203 1.22032 0.95084 0.96288 0.97856 0.86919 1.23330 0.91622 1.01633 0.98626 1.24160 0.94458 0.85251 0.96628 1.88076 1.42905 1.19226 1.76047 1.23312 0.87469 0.96596 1.01878 1.21542 0.84100 0.79800 0.76826 1.93174 1.94321 1.34511 1.93847 1.93189 1.96705 1.94548 1.32542 1.93182 1.47203 1.91000 1.85171 1.23626 0.95626 1.06722 0.91023 1.20259 0.90400 0.99459 1.09426 1.19818 0.96153 0.91489 0.96378 1.25241 0.91263 1.12263 0.90162 1.86584 1.78702 1.53801 1.16097 0.93822 0.76439 0.73676 0.88924 1.20343 0.91990 0.98135 1.11331 0.91677 0.91502 0.86264 0.82890 0.89930 0.90316 0.85857 0.89211 0.93884 0.86624 0.90956 0.87293 0.85888 0.85040 0.85046 0.76384 1.22462 1.21130 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.70 10.50 -92.36 -0.97 -1.67 16 3 C 0.16 0.51 6.68 22.49 0.15 0.66 16 4 C -0.29 -0.41 8.02 22.46 0.18 -0.23 16 5 C 0.16 0.60 6.68 22.49 0.15 0.75 16 6 O -0.32 -0.83 10.14 -92.41 -0.94 -1.77 16 7 C 0.07 -0.22 4.32 71.98 0.31 0.09 16 8 C -0.09 0.51 4.20 -10.27 -0.04 0.46 16 9 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 10 C -0.12 0.38 6.89 31.12 0.21 0.60 16 11 C 0.04 -0.10 0.84 -10.27 -0.01 -0.11 16 12 O -0.34 0.62 8.37 -148.98 -1.25 -0.63 16 13 C 0.00 -0.02 10.30 113.37 1.17 1.15 16 14 C 0.43 0.57 2.52 71.98 0.18 0.75 16 15 F -0.18 -0.30 15.81 44.97 0.71 0.41 16 16 F -0.19 -1.05 17.10 44.97 0.77 -0.28 16 17 F -0.18 -0.29 15.39 44.97 0.69 0.40 16 18 C -0.13 0.97 6.51 31.12 0.20 1.17 16 19 C -0.18 -0.76 9.62 22.38 0.22 -0.55 16 20 C -0.04 -0.09 5.35 -19.89 -0.11 -0.20 16 21 C -0.08 -0.06 2.80 71.24 0.20 0.14 16 22 O -0.54 -1.89 12.83 -148.98 -1.91 -3.80 16 23 Si 0.77 -0.34 29.88 68.60 2.05 1.71 16 24 C -0.20 -0.55 8.61 22.38 0.19 -0.35 16 25 H 0.06 -0.49 7.67 -2.39 -0.02 -0.51 16 26 H 0.07 -0.49 7.65 -2.38 -0.02 -0.51 16 27 H 0.12 -1.06 8.14 -2.38 -0.02 -1.08 16 28 H 0.15 -0.49 4.54 -2.91 -0.01 -0.51 16 29 H 0.08 -0.24 5.63 -2.39 -0.01 -0.25 16 30 H 0.08 -0.48 7.67 -2.39 -0.02 -0.49 16 31 H 0.12 -0.60 7.02 -2.38 -0.02 -0.62 16 32 H 0.09 -0.11 8.10 -2.39 -0.02 -0.13 16 33 H 0.04 -0.15 6.69 -2.39 -0.02 -0.16 16 34 H 0.12 -1.06 8.14 -2.38 -0.02 -1.08 16 35 H 0.07 -0.69 6.55 -2.39 -0.02 -0.71 16 36 H 0.11 -1.11 6.63 -2.38 -0.02 -1.13 16 37 H 0.12 -1.09 8.05 -2.39 -0.02 -1.11 16 38 H 0.13 0.59 8.06 -2.91 -0.02 0.57 16 39 H 0.13 -0.17 7.96 -2.39 -0.02 -0.19 16 40 H 0.39 -0.79 8.70 -74.06 -0.64 -1.44 16 41 H -0.30 -1.88 7.11 99.48 0.71 -1.17 16 42 H -0.28 -1.07 7.01 99.48 0.70 -0.37 16 43 H 0.14 0.08 4.83 -2.91 -0.01 0.07 16 Total: 0.00 -15.52 357.46 3.74 -11.79 By element: Atomic # 1 Polarization: -11.99 SS G_CDS: 0.46 Total: -11.53 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 4.12 Total: 5.37 kcal Atomic # 8 Polarization: -2.80 SS G_CDS: -5.06 Total: -7.87 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 2.17 Total: 0.53 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.05 Total: 1.71 kcal Total: -15.52 3.74 -11.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759150_17321602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.334 kcal (2) G-P(sol) polarization free energy of solvation -15.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds