Wall clock time and date at job start Mon Mar 8 2021 09:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38609 * 120.03002 * 0.02562 * 3 2 1 5 5 C 1.38651 * 119.89038 * 179.97438 * 4 3 2 6 6 O 1.35902 * 120.02692 * 180.02562 * 5 4 3 7 7 C 1.42898 * 117.00078 * 359.97438 * 6 5 4 8 8 C 1.52998 * 109.47144 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47171 * 180.02562 * 8 7 6 10 10 O 1.42900 * 109.47415 * 180.02562 * 9 8 7 11 11 Si 1.63103 * 114.00220 * 179.97438 * 10 9 8 12 12 C 1.86296 * 109.47186 * 300.00310 * 11 10 9 13 13 C 1.86305 * 109.46874 * 60.00199 * 11 10 9 14 14 C 1.86295 * 109.47083 * 180.02562 * 11 10 9 15 15 C 1.52997 * 109.47400 * 59.99706 * 14 11 10 16 16 C 1.52995 * 109.47335 * 180.02562 * 14 11 10 17 17 C 1.53005 * 109.47010 * 300.00042 * 14 11 10 18 18 C 1.38753 * 119.94702 * 0.02562 * 5 4 3 19 19 C 1.38196 * 120.05247 * 0.02562 * 18 5 4 20 20 C 1.50698 * 119.94578 * 179.97438 * 19 18 5 21 21 O 1.42910 * 109.47152 * 299.99949 * 20 19 18 22 22 Si 1.86305 * 109.47266 * 180.02562 * 20 19 18 23 23 H 1.48493 * 109.47203 * 59.99494 * 22 20 19 24 24 H 1.48501 * 109.47198 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46599 * 299.99705 * 22 20 19 26 26 C 1.38158 * 120.10844 * 359.70117 * 19 18 5 27 27 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47043 * 300.00197 * 1 2 3 29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 30 30 H 1.07999 * 120.05157 * 359.95697 * 4 3 2 31 31 H 1.08996 * 109.47248 * 300.00331 * 7 6 5 32 32 H 1.09000 * 109.46782 * 59.99906 * 7 6 5 33 33 H 1.08996 * 109.47385 * 300.00329 * 8 7 6 34 34 H 1.09008 * 109.46694 * 60.00292 * 8 7 6 35 35 H 1.09010 * 109.47258 * 300.00521 * 9 8 7 36 36 H 1.09000 * 109.47257 * 60.00232 * 9 8 7 37 37 H 1.08997 * 109.47661 * 59.99687 * 12 11 10 38 38 H 1.09000 * 109.47315 * 179.97438 * 12 11 10 39 39 H 1.09006 * 109.47076 * 299.99942 * 12 11 10 40 40 H 1.08997 * 109.47278 * 59.99974 * 13 11 10 41 41 H 1.09000 * 109.46837 * 180.02562 * 13 11 10 42 42 H 1.09004 * 109.46633 * 299.99919 * 13 11 10 43 43 H 1.09011 * 109.46616 * 60.00062 * 15 14 11 44 44 H 1.09004 * 109.47261 * 179.97438 * 15 14 11 45 45 H 1.09000 * 109.47663 * 300.00334 * 15 14 11 46 46 H 1.08998 * 109.47478 * 59.99520 * 16 14 11 47 47 H 1.08997 * 109.47330 * 180.02562 * 16 14 11 48 48 H 1.09011 * 109.46696 * 299.99948 * 16 14 11 49 49 H 1.09000 * 109.47362 * 60.00084 * 17 14 11 50 50 H 1.08997 * 109.46976 * 179.97438 * 17 14 11 51 51 H 1.08998 * 109.46957 * 299.99961 * 17 14 11 52 52 H 1.07998 * 119.97215 * 180.02562 * 18 5 4 53 53 H 1.08997 * 109.47304 * 59.99744 * 20 19 18 54 54 H 0.96698 * 113.99978 * 300.00185 * 21 20 19 55 55 H 1.08005 * 119.97171 * 180.29540 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2915 2.3738 0.0005 5 6 1.9239 3.6077 0.0011 6 8 1.1870 4.7495 0.0021 7 6 -0.2346 4.6042 0.0021 8 6 -0.8886 5.9874 0.0040 9 6 -2.4107 5.8318 0.0045 10 8 -3.0216 7.1236 0.0057 11 14 -4.6522 7.0864 0.0058 12 6 -5.2531 6.1955 -1.5160 13 6 -5.2529 6.1928 1.5262 14 6 -5.3131 8.8281 0.0066 15 6 -4.8197 9.5615 -1.2423 16 6 -6.8427 8.7933 0.0073 17 6 -4.8196 9.5603 1.2562 18 6 3.3098 3.6757 0.0005 19 6 4.0597 2.5149 -0.0011 20 6 5.5647 2.5916 -0.0022 21 8 6.0052 3.2897 -1.1689 22 14 6.2744 0.8691 -0.0051 23 1 5.8146 0.1463 -1.2180 24 1 7.7575 0.9447 -0.0056 25 1 5.8167 0.1433 1.2069 26 6 3.4319 1.2842 0.0041 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2129 2.3187 0.0003 31 1 -0.5438 4.0569 -0.8883 32 1 -0.5437 4.0553 0.8916 33 1 -0.5794 6.5343 0.8946 34 1 -0.5795 6.5366 -0.8854 35 1 -2.7204 5.2846 -0.8859 36 1 -2.7195 5.2827 0.8941 37 1 -4.8664 5.1764 -1.5170 38 1 -6.3428 6.1702 -1.5158 39 1 -4.9016 6.7183 -2.4057 40 1 -4.9013 6.7140 2.4166 41 1 -6.3426 6.1676 1.5260 42 1 -4.8661 5.1737 1.5252 43 1 -5.1713 9.0398 -2.1326 44 1 -5.2068 10.5805 -1.2420 45 1 -3.7300 9.5864 -1.2424 46 1 -7.1938 8.2710 0.8972 47 1 -7.2294 9.8123 0.0073 48 1 -7.1946 8.2715 -0.8828 49 1 -3.7299 9.5852 1.2562 50 1 -5.2059 10.5795 1.2564 51 1 -5.1711 9.0379 2.1459 52 1 3.8028 4.6366 0.0014 53 1 5.9022 3.1226 0.8879 54 1 5.7401 2.8729 -2.0002 55 1 4.0201 0.3785 0.0076 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11759150_18527726.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:25:05 Heat of formation + Delta-G solvation = -183.926874 kcal Electronic energy + Delta-G solvation = -29790.460024 eV Core-core repulsion = 25723.523774 eV Total energy + Delta-G solvation = -4066.936250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.202 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71484 -39.99895 -38.93502 -38.17921 -36.84140 -36.82046 -33.61529 -31.99101 -31.04520 -29.38074 -29.06089 -28.52593 -27.84221 -27.38070 -26.84199 -26.26985 -23.61390 -22.92389 -21.88028 -20.42102 -19.73264 -18.23363 -17.98158 -17.52260 -17.49202 -17.26106 -16.85003 -16.76206 -16.13453 -15.99971 -15.98008 -15.70345 -15.53814 -15.17446 -14.86355 -14.81048 -14.70014 -14.20122 -14.10609 -13.94264 -13.52302 -13.38868 -13.31923 -13.20683 -13.19479 -13.06373 -12.95888 -12.93664 -12.79251 -12.45434 -12.40414 -12.28318 -12.20402 -12.14081 -11.99054 -11.74400 -11.71051 -11.69764 -11.52269 -11.33654 -11.29862 -10.46252 -10.30936 -10.05772 -9.73827 -9.10866 0.10025 0.34517 1.15637 1.43217 1.47614 1.54901 1.78385 1.90732 2.12077 2.13356 2.23289 2.52969 2.55179 3.47926 3.64709 3.80829 3.87218 3.88737 4.03040 4.06927 4.10933 4.12288 4.12847 4.23961 4.32274 4.33179 4.34537 4.35557 4.43896 4.46360 4.52764 4.67459 4.71036 4.74712 4.75599 4.78512 4.79697 4.82317 4.82469 4.99765 5.04114 5.04786 5.08927 5.09234 5.09450 5.17791 5.21949 5.31202 5.34809 5.40589 5.44520 5.49008 5.54835 5.60999 5.64918 6.12667 6.42348 6.69142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.163 3.837 4 C -0.293 4.293 5 C 0.163 3.837 6 O -0.323 6.323 7 C 0.052 3.948 8 C -0.121 4.121 9 C 0.081 3.919 10 O -0.641 6.641 11 Si 1.318 2.682 12 C -0.517 4.517 13 C -0.517 4.517 14 C -0.386 4.386 15 C -0.137 4.137 16 C -0.140 4.140 17 C -0.137 4.137 18 C -0.173 4.173 19 C -0.040 4.040 20 C -0.078 4.078 21 O -0.548 6.548 22 Si 0.985 3.015 23 H -0.255 1.255 24 H -0.270 1.270 25 H -0.259 1.259 26 C -0.212 4.212 27 H 0.118 0.882 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.061 0.939 52 H 0.136 0.864 53 H 0.132 0.868 54 H 0.390 0.610 55 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.421 -2.895 -0.137 5.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.117 3.883 4 C -0.312 4.312 5 C 0.117 3.883 6 O -0.236 6.236 7 C -0.023 4.023 8 C -0.159 4.159 9 C 0.005 3.995 10 O -0.601 6.601 11 Si 1.448 2.552 12 C -0.619 4.619 13 C -0.619 4.619 14 C -0.428 4.428 15 C -0.194 4.194 16 C -0.198 4.198 17 C -0.194 4.194 18 C -0.192 4.192 19 C -0.041 4.041 20 C -0.188 4.188 21 O -0.355 6.355 22 Si 0.809 3.191 23 H -0.179 1.179 24 H -0.195 1.195 25 H -0.184 1.184 26 C -0.230 4.230 27 H 0.136 0.864 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.176 0.824 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.080 0.920 52 H 0.154 0.846 53 H 0.150 0.850 54 H 0.239 0.761 55 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.489 -3.136 0.301 4.701 hybrid contribution -1.354 0.197 -0.340 1.410 sum -4.844 -2.939 -0.039 5.666 Atomic orbital electron populations 1.23409 0.76172 1.05856 1.02510 1.86092 1.23732 1.26482 1.88115 1.18746 0.91922 0.84321 0.93332 1.21469 1.01751 0.91199 1.16766 1.18831 0.91227 0.84838 0.93394 1.86074 1.20327 1.29154 1.88079 1.22924 0.77106 0.99026 1.03200 1.21490 0.94163 0.95571 1.04653 1.22000 0.92229 0.82730 1.02516 1.85324 1.48456 1.34597 1.91702 0.76156 0.50642 0.63595 0.64826 1.27087 1.07405 1.09263 1.18156 1.27087 1.07404 1.09291 1.18129 1.25978 1.00897 1.18279 0.97677 1.21543 1.00914 1.00145 0.96832 1.21600 0.93694 1.02131 1.02332 1.21543 1.00917 1.00149 0.96830 1.20261 0.90329 0.99542 1.09077 1.19940 0.96664 0.91315 0.96191 1.25063 0.90709 1.10393 0.92646 1.86498 1.78446 1.54499 1.16061 0.85169 0.78644 0.73998 0.81247 1.17870 1.19485 1.18377 1.20346 0.92295 0.98156 1.12213 0.86355 0.91382 0.91359 0.82433 0.90110 0.90126 0.90547 0.90542 0.90667 0.90663 0.90697 0.90375 0.91259 0.91262 0.90374 0.90696 0.92032 0.93464 0.92632 0.91735 0.93284 0.91744 0.92641 0.93465 0.92027 0.84648 0.85025 0.76085 0.84944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.04 16 2 O -0.33 -1.03 10.50 -92.48 -0.97 -2.00 16 3 C 0.16 0.66 6.68 22.49 0.15 0.81 16 4 C -0.29 -0.47 8.02 22.46 0.18 -0.29 16 5 C 0.16 0.68 6.68 22.49 0.15 0.83 16 6 O -0.32 -1.18 10.14 -92.44 -0.94 -2.11 16 7 C 0.05 -0.17 4.74 71.98 0.34 0.17 16 8 C -0.12 0.30 5.95 30.59 0.18 0.48 16 9 C 0.08 -0.39 5.12 71.98 0.37 -0.02 16 10 O -0.64 0.68 8.56 -148.98 -1.28 -0.60 16 11 Si 1.32 -5.13 8.45 68.60 0.58 -4.55 16 12 C -0.52 2.02 8.50 113.37 0.96 2.98 16 13 C -0.52 2.01 8.50 113.37 0.96 2.98 16 14 C -0.39 0.39 0.53 -10.79 -0.01 0.39 16 15 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 16 C -0.14 0.27 7.85 71.98 0.56 0.83 16 17 C -0.14 -0.04 7.85 71.98 0.56 0.52 16 18 C -0.17 -0.81 9.55 22.38 0.21 -0.60 16 19 C -0.04 -0.13 5.39 -19.89 -0.11 -0.23 16 20 C -0.08 -0.02 2.82 71.24 0.20 0.18 16 21 O -0.55 -0.74 12.77 -148.98 -1.90 -2.64 16 22 Si 0.99 0.23 25.07 68.60 1.72 1.95 16 23 H -0.25 -0.21 7.11 99.48 0.71 0.49 16 24 H -0.27 -0.75 7.11 99.48 0.71 -0.04 16 25 H -0.26 -0.46 7.11 99.48 0.71 0.25 16 26 C -0.21 -0.89 8.61 22.38 0.19 -0.70 16 27 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H 0.07 -0.50 7.66 -2.39 -0.02 -0.52 16 29 H 0.07 -0.51 7.66 -2.39 -0.02 -0.53 16 30 H 0.16 -0.63 4.54 -2.91 -0.01 -0.64 16 31 H 0.08 -0.52 7.66 -2.39 -0.02 -0.54 16 32 H 0.08 -0.52 7.66 -2.39 -0.02 -0.54 16 33 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 35 H 0.08 -0.64 7.21 -2.38 -0.02 -0.66 16 36 H 0.08 -0.64 7.22 -2.39 -0.02 -0.66 16 37 H 0.07 -0.42 7.48 -2.39 -0.02 -0.43 16 38 H 0.08 -0.34 7.79 -2.39 -0.02 -0.36 16 39 H 0.07 -0.19 7.79 -2.38 -0.02 -0.21 16 40 H 0.07 -0.19 7.79 -2.39 -0.02 -0.21 16 41 H 0.08 -0.34 7.79 -2.39 -0.02 -0.36 16 42 H 0.07 -0.42 7.48 -2.38 -0.02 -0.43 16 43 H 0.06 -0.08 7.79 -2.38 -0.02 -0.10 16 44 H 0.05 0.06 8.14 -2.38 -0.02 0.05 16 45 H 0.05 0.06 7.97 -2.39 -0.02 0.04 16 46 H 0.06 -0.23 7.79 -2.39 -0.02 -0.25 16 47 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.06 -0.23 7.79 -2.38 -0.02 -0.25 16 49 H 0.05 0.06 7.97 -2.39 -0.02 0.04 16 50 H 0.05 0.06 8.14 -2.39 -0.02 0.05 16 51 H 0.06 -0.08 7.80 -2.39 -0.02 -0.10 16 52 H 0.14 0.63 8.06 -2.91 -0.02 0.61 16 53 H 0.13 -0.23 7.96 -2.39 -0.02 -0.25 16 54 H 0.39 -1.93 8.70 -74.06 -0.64 -2.57 16 55 H 0.13 0.38 4.87 -2.91 -0.01 0.37 16 Total: 0.00 -13.77 432.51 4.78 -8.99 By element: Atomic # 1 Polarization: -9.87 SS G_CDS: 0.96 Total: -8.91 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.60 Total: 9.88 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: -5.08 Total: -7.36 kcal Atomic # 14 Polarization: -4.90 SS G_CDS: 2.30 Total: -2.60 kcal Total: -13.77 4.78 -8.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759150_18527726.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.936 kcal (2) G-P(sol) polarization free energy of solvation -13.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds