Wall clock time and date at job start Mon Mar 8 2021 08:08:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42908 * 1
3 3 C 1.35893 * 117.00032 * 2 1
4 4 C 1.38750 * 120.03022 * 179.97438 * 3 2 1
5 5 C 1.38195 * 120.05736 * 180.02562 * 4 3 2
6 6 C 1.50701 * 119.94282 * 180.02562 * 5 4 3
7 7 O 1.42901 * 109.47214 * 119.97676 * 6 5 4
8 8 Si 1.86301 * 109.47335 * 359.97224 * 6 5 4
9 9 H 1.48499 * 109.46822 * 60.00684 * 8 6 5
10 10 H 1.48504 * 109.47086 * 180.02562 * 8 6 5
11 11 H 1.48493 * 109.47095 * 300.00293 * 8 6 5
12 12 C 1.38149 * 120.11185 * 359.97438 * 5 4 3
13 13 C 1.38798 * 120.05302 * 0.02562 * 12 5 4
14 14 O 1.35888 * 120.02757 * 179.97438 * 13 12 5
15 15 C 1.42906 * 117.00213 * 179.97438 * 14 13 12
16 16 C 1.50693 * 109.47463 * 179.97438 * 15 14 13
17 17 C 1.38233 * 120.00207 * 89.99418 * 16 15 14
18 18 C 1.38234 * 120.00037 * 179.72405 * 17 16 15
19 19 C 1.38234 * 120.00240 * 0.26327 * 18 17 16
20 20 Si 1.86795 * 120.00205 * 180.02562 * 19 18 17
21 21 C 1.86297 * 109.47192 * 89.99958 * 20 19 18
22 22 C 1.86301 * 109.47283 * 209.99980 * 20 19 18
23 23 C 1.86301 * 109.47118 * 329.99845 * 20 19 18
24 24 C 1.38238 * 119.99693 * 359.97438 * 19 18 17
25 25 C 1.38234 * 120.00067 * 0.02562 * 24 19 18
26 26 C 1.38619 * 119.94299 * 0.26547 * 13 12 5
27 27 H 1.09000 * 109.46828 * 59.99914 * 1 2 3
28 28 H 1.09000 * 109.46981 * 179.97438 * 1 2 3
29 29 H 1.09001 * 109.46986 * 299.99693 * 1 2 3
30 30 H 1.08005 * 119.97111 * 0.02576 * 4 3 2
31 31 H 1.09005 * 109.46844 * 239.97276 * 6 5 4
32 32 H 0.96700 * 113.99839 * 299.99699 * 7 6 5
33 33 H 1.08000 * 119.97546 * 180.02562 * 12 5 4
34 34 H 1.09000 * 109.46902 * 59.99867 * 15 14 13
35 35 H 1.09001 * 109.46622 * 299.99762 * 15 14 13
36 36 H 1.08002 * 120.00157 * 0.02562 * 17 16 15
37 37 H 1.07999 * 120.00009 * 180.28389 * 18 17 16
38 38 H 1.08999 * 109.47282 * 60.00138 * 21 20 19
39 39 H 1.08997 * 109.47709 * 179.97438 * 21 20 19
40 40 H 1.09001 * 109.47505 * 300.00288 * 21 20 19
41 41 H 1.08998 * 109.47270 * 60.00089 * 22 20 19
42 42 H 1.08997 * 109.47416 * 180.02562 * 22 20 19
43 43 H 1.09006 * 109.46995 * 300.00168 * 22 20 19
44 44 H 1.09002 * 109.46976 * 60.00696 * 23 20 19
45 45 H 1.09005 * 109.47230 * 179.97438 * 23 20 19
46 46 H 1.08998 * 109.47233 * 299.99787 * 23 20 19
47 47 H 1.08001 * 119.99624 * 180.02562 * 24 19 18
48 48 H 1.07999 * 120.00008 * 180.02562 * 25 24 19
49 49 H 1.07996 * 120.05003 * 179.74972 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0460 1.2108 0.0000
4 6 3.4316 1.2841 0.0005
5 6 4.0596 2.5152 0.0011
6 6 5.5646 2.5918 0.0011
7 8 6.0061 3.2889 -1.1657
8 14 6.2742 0.8692 0.0011
9 1 5.8156 0.1450 -1.2114
10 1 7.7573 0.9448 0.0018
11 1 5.8155 0.1450 1.2136
12 6 3.3100 3.6756 0.0005
13 6 1.9237 3.6076 0.0000
14 8 1.1868 4.7494 0.0000
15 6 -0.2348 4.6042 -0.0011
16 6 -0.8790 5.9665 -0.0003
17 6 -1.1735 6.5925 -1.1971
18 6 -1.7697 7.8397 -1.1963
19 6 -2.0663 8.4633 0.0012
20 14 -2.8725 10.1483 0.0023
21 6 -4.7250 9.9504 0.0048
22 6 -2.3463 11.0876 1.5226
23 6 -2.3504 11.0875 -1.5196
24 6 -1.7673 7.8394 1.1980
25 6 -1.1712 6.5922 1.1972
26 6 1.2914 2.3740 0.0056
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3633 0.5138 0.8900
30 1 4.0198 0.3784 0.0005
31 1 5.9013 3.1235 0.8911
32 1 5.7417 2.8713 -1.9969
33 1 3.8030 4.6365 0.0005
34 1 -0.5447 4.0556 0.8883
35 1 -0.5433 4.0565 -0.8917
36 1 -0.9423 6.1051 -2.1327
37 1 -2.0039 8.3268 -2.1313
38 1 -5.0305 9.4010 0.8952
39 1 -5.1955 10.9336 0.0059
40 1 -5.0330 9.4008 -0.8847
41 1 -1.2625 11.2035 1.5211
42 1 -2.8170 12.0707 1.5235
43 1 -2.6517 10.5381 2.4131
44 1 -2.6584 10.5380 -2.4092
45 1 -2.8212 12.0706 -1.5193
46 1 -1.2666 11.2033 -1.5211
47 1 -1.9995 8.3264 2.1336
48 1 -0.9380 6.1046 2.1322
49 1 0.2129 2.3191 0.0092
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
s_34_11759150_9403676.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 8 2021 08:08:34
Heat of formation + Delta-G solvation = -93.365588 kcal
Electronic energy + Delta-G solvation = -27103.607578 eV
Core-core repulsion = 23312.988847 eV
Total energy + Delta-G solvation = -3790.618731 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 346.156 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.79425 -40.42665 -39.55747 -38.82136 -36.84793 -33.23519 -32.01693 -31.90389
-31.08667 -29.45220 -28.64046 -28.30076 -28.27393 -27.17175 -26.52577 -23.65449
-23.50967 -22.70694 -21.73708 -19.80934 -18.38653 -17.96820 -17.50069 -17.25407
-17.23012 -16.86205 -16.70383 -16.12286 -16.08311 -15.70167 -15.53685 -15.40311
-14.82413 -14.35827 -14.35713 -14.10135 -14.05921 -13.87935 -13.75051 -13.56700
-13.52480 -13.30881 -13.13903 -13.12069 -12.97260 -12.96705 -12.58433 -12.52325
-12.37690 -12.23789 -12.04215 -11.95666 -11.72764 -11.57880 -10.93401 -10.79320
-10.76450 -10.48801 -9.83022 -9.78243 -9.71317 -9.15250 0.05879 0.12866
0.30272 0.49951 1.14223 1.46478 1.53647 1.82519 1.88600 1.97641
2.01693 2.17530 2.27114 2.50823 2.66007 2.98908 3.43308 3.60460
3.71345 3.75032 3.76297 3.96635 4.02911 4.07879 4.18693 4.19984
4.22939 4.28923 4.30845 4.47888 4.51204 4.64014 4.67632 4.69058
4.84222 4.84343 4.88212 4.88738 4.89269 4.90243 4.97701 5.05101
5.10947 5.13787 5.26505 5.37845 5.44016 5.54543 5.57473 5.58823
5.67567 5.70062 6.06055 6.10181 6.36534 6.66938
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 O -0.329 6.329
3 C 0.164 3.836
4 C -0.210 4.210
5 C -0.039 4.039
6 C -0.079 4.079
7 O -0.548 6.548
8 Si 0.986 3.014
9 H -0.254 1.254
10 H -0.269 1.269
11 H -0.259 1.259
12 C -0.172 4.172
13 C 0.162 3.838
14 O -0.318 6.318
15 C 0.099 3.901
16 C -0.105 4.105
17 C -0.122 4.122
18 C -0.104 4.104
19 C -0.373 4.373
20 Si 1.128 2.872
21 C -0.461 4.461
22 C -0.463 4.463
23 C -0.463 4.463
24 C -0.104 4.104
25 C -0.122 4.122
26 C -0.293 4.293
27 H 0.066 0.934
28 H 0.120 0.880
29 H 0.066 0.934
30 H 0.135 0.865
31 H 0.132 0.868
32 H 0.390 0.610
33 H 0.134 0.866
34 H 0.082 0.918
35 H 0.082 0.918
36 H 0.127 0.873
37 H 0.140 0.860
38 H 0.067 0.933
39 H 0.075 0.925
40 H 0.068 0.932
41 H 0.066 0.934
42 H 0.075 0.925
43 H 0.072 0.928
44 H 0.072 0.928
45 H 0.075 0.925
46 H 0.066 0.934
47 H 0.140 0.860
48 H 0.127 0.873
49 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.550 0.398 -0.142 4.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.243 6.243
3 C 0.118 3.882
4 C -0.228 4.228
5 C -0.040 4.040
6 C -0.189 4.189
7 O -0.355 6.355
8 Si 0.810 3.190
9 H -0.178 1.178
10 H -0.194 1.194
11 H -0.183 1.183
12 C -0.191 4.191
13 C 0.116 3.884
14 O -0.232 6.232
15 C 0.024 3.976
16 C -0.105 4.105
17 C -0.140 4.140
18 C -0.121 4.121
19 C -0.412 4.412
20 Si 1.315 2.685
21 C -0.568 4.568
22 C -0.570 4.570
23 C -0.570 4.570
24 C -0.121 4.121
25 C -0.140 4.140
26 C -0.313 4.313
27 H 0.084 0.916
28 H 0.138 0.862
29 H 0.084 0.916
30 H 0.152 0.848
31 H 0.150 0.850
32 H 0.239 0.761
33 H 0.152 0.848
34 H 0.100 0.900
35 H 0.100 0.900
36 H 0.145 0.855
37 H 0.158 0.842
38 H 0.087 0.913
39 H 0.094 0.906
40 H 0.087 0.913
41 H 0.086 0.914
42 H 0.094 0.906
43 H 0.091 0.909
44 H 0.091 0.909
45 H 0.094 0.906
46 H 0.086 0.914
47 H 0.158 0.842
48 H 0.145 0.855
49 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -3.810 -0.115 0.297 3.823
hybrid contribution -0.738 -0.271 -0.339 0.857
sum -4.548 -0.386 -0.042 4.564
Atomic orbital electron populations
1.23398 0.76218 1.05885 1.02351 1.86088 1.23643 1.26431 1.88092
1.18742 0.91960 0.84236 0.93282 1.20349 0.92181 0.98206 1.12113
1.19952 0.96732 0.91222 0.96052 1.25088 0.90566 1.10579 0.92649
1.86497 1.78410 1.54526 1.16055 0.85153 0.78684 0.73842 0.81292
1.17806 1.19373 1.18331 1.20248 0.90175 0.99566 1.09112 1.18864
0.91262 0.84805 0.93464 1.86180 1.19726 1.29258 1.88059 1.21779
0.77267 0.95304 1.03202 1.19605 1.00674 0.95791 0.94408 1.21382
0.98857 0.96213 0.97514 1.21400 0.97025 0.94401 0.99307 1.28076
1.03752 1.15532 0.93806 0.77161 0.64785 0.60541 0.66036 1.26265
1.21168 1.04874 1.04467 1.26291 1.05833 1.09091 1.15814 1.26291
1.05811 1.09090 1.15836 1.21400 0.97023 0.94398 0.99314 1.21383
0.98868 0.96221 0.97508 1.21440 1.01557 0.91327 1.16937 0.91561
0.86164 0.91584 0.84753 0.85036 0.76082 0.84768 0.89969 0.89957
0.85456 0.84226 0.91333 0.90628 0.91327 0.91447 0.90608 0.90884
0.90881 0.90608 0.91447 0.84229 0.85464 0.82864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 -0.05 9.81 113.37 1.11 1.06 16
2 O -0.33 -1.43 10.50 -92.34 -0.97 -2.40 16
3 C 0.16 0.88 6.68 22.49 0.15 1.03 16
4 C -0.21 -1.07 8.61 22.38 0.19 -0.87 16
5 C -0.04 -0.16 5.39 -19.90 -0.11 -0.26 16
6 C -0.08 -0.07 2.82 71.24 0.20 0.13 16
7 O -0.55 -1.06 12.77 -148.98 -1.90 -2.96 16
8 Si 0.99 0.57 25.07 68.60 1.72 2.29 16
9 H -0.25 -0.29 7.11 99.48 0.71 0.42 16
10 H -0.27 -0.80 7.11 99.48 0.71 -0.10 16
11 H -0.26 -0.55 7.11 99.48 0.71 0.16 16
12 C -0.17 -1.04 9.55 22.38 0.21 -0.83 16
13 C 0.16 0.98 6.68 22.49 0.15 1.13 16
14 O -0.32 -2.11 10.12 -92.29 -0.93 -3.05 16
15 C 0.10 0.14 4.86 71.23 0.35 0.49 16
16 C -0.10 -0.35 5.51 -19.87 -0.11 -0.46 16
17 C -0.12 -0.32 9.70 22.27 0.22 -0.11 16
18 C -0.10 -0.08 9.29 22.27 0.21 0.13 16
19 C -0.37 0.19 4.59 22.27 0.10 0.29 16
20 Si 1.13 -6.47 12.32 68.60 0.85 -5.63 16
21 C -0.46 1.87 8.65 113.37 0.98 2.85 16
22 C -0.46 1.90 8.53 113.37 0.97 2.87 16
23 C -0.46 1.90 8.53 113.37 0.97 2.87 16
24 C -0.10 -0.08 9.29 22.27 0.21 0.13 16
25 C -0.12 -0.32 9.70 22.27 0.22 -0.11 16
26 C -0.29 -1.04 8.02 22.46 0.18 -0.86 16
27 H 0.07 -0.36 7.67 -2.39 -0.02 -0.37 16
28 H 0.12 -0.84 8.14 -2.39 -0.02 -0.86 16
29 H 0.07 -0.35 7.65 -2.39 -0.02 -0.37 16
30 H 0.13 0.47 4.87 -2.91 -0.01 0.45 16
31 H 0.13 -0.15 7.96 -2.38 -0.02 -0.17 16
32 H 0.39 -1.70 8.70 -74.06 -0.64 -2.35 16
33 H 0.13 0.83 8.06 -2.91 -0.02 0.81 16
34 H 0.08 -0.12 7.59 -2.39 -0.02 -0.13 16
35 H 0.08 -0.12 7.62 -2.39 -0.02 -0.14 16
36 H 0.13 0.02 8.06 -2.91 -0.02 -0.01 16
37 H 0.14 -0.49 7.43 -2.91 -0.02 -0.51 16
38 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16
39 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16
40 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16
41 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16
42 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16
43 H 0.07 -0.34 7.69 -2.38 -0.02 -0.35 16
44 H 0.07 -0.34 7.69 -2.39 -0.02 -0.35 16
45 H 0.07 -0.34 7.96 -2.38 -0.02 -0.36 16
46 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16
47 H 0.14 -0.49 7.43 -2.91 -0.02 -0.51 16
48 H 0.13 0.02 8.06 -2.91 -0.02 0.00 16
49 H 0.15 -0.18 4.54 -2.91 -0.01 -0.19 16
Total: 0.00 -14.91 403.20 6.01 -8.90
By element:
Atomic # 1 Polarization: -7.68 SS G_CDS: 1.05 Total: -6.62 kcal
Atomic # 6 Polarization: 3.27 SS G_CDS: 6.19 Total: 9.46 kcal
Atomic # 8 Polarization: -4.60 SS G_CDS: -3.80 Total: -8.41 kcal
Atomic # 14 Polarization: -5.90 SS G_CDS: 2.56 Total: -3.33 kcal
Total: -14.91 6.01 -8.90 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
s_34_11759150_9403676.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.461 kcal
(2) G-P(sol) polarization free energy of solvation -14.913 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.374 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.008 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.366 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds