Wall clock time and date at job start Mon Mar 8 2021 09:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47158 * 2 1 4 4 C 1.38130 * 120.02600 * 261.59501 * 3 2 1 5 5 C 1.38287 * 120.05202 * 180.32195 * 4 3 2 6 6 C 1.38235 * 120.11632 * 359.67585 * 5 4 3 7 7 C 1.38171 * 120.05469 * 0.02589 * 6 5 4 8 8 C 1.50701 * 120.02692 * 180.02562 * 7 6 5 9 9 O 1.42902 * 109.46765 * 254.97247 * 8 7 6 10 10 Si 1.86297 * 109.47534 * 14.97494 * 8 7 6 11 11 H 1.48505 * 109.46793 * 60.00011 * 10 8 7 12 12 H 1.48499 * 109.47287 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47157 * 300.00388 * 10 8 7 14 14 C 1.38713 * 119.94263 * 359.97438 * 7 6 5 15 15 O 1.35896 * 120.05525 * 180.02562 * 14 7 6 16 16 C 1.42904 * 117.00088 * 266.02110 * 15 14 7 17 17 C 1.53005 * 109.46988 * 176.14653 * 16 15 14 18 18 O 1.42895 * 109.47292 * 64.99525 * 17 16 15 19 19 Si 1.63102 * 113.99691 * 179.97438 * 18 17 16 20 20 C 1.86296 * 109.47237 * 299.99914 * 19 18 17 21 21 C 1.86299 * 109.47097 * 60.00093 * 19 18 17 22 22 C 1.86300 * 109.46991 * 180.02562 * 19 18 17 23 23 C 1.53004 * 109.47131 * 60.00089 * 22 19 18 24 24 C 1.52999 * 109.46973 * 179.97438 * 22 19 18 25 25 C 1.53002 * 109.47149 * 299.99885 * 22 19 18 26 26 H 1.09001 * 109.47621 * 295.10886 * 1 2 3 27 27 H 1.09000 * 109.46883 * 55.10645 * 1 2 3 28 28 H 1.09002 * 109.47167 * 175.10213 * 1 2 3 29 29 H 1.08997 * 109.47369 * 239.99849 * 2 1 3 30 30 H 1.08998 * 109.47004 * 119.99320 * 2 1 3 31 31 H 1.08002 * 119.96947 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.94016 * 179.70153 * 5 4 3 33 33 H 1.08003 * 119.97826 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.46845 * 134.97936 * 8 7 6 35 35 H 0.96708 * 113.99659 * 60.00844 * 9 8 7 36 36 H 1.08998 * 109.47422 * 56.14113 * 16 15 14 37 37 H 1.08998 * 109.46970 * 296.13983 * 16 15 14 38 38 H 1.09005 * 109.46870 * 184.99825 * 17 16 15 39 39 H 1.08998 * 109.46769 * 304.98956 * 17 16 15 40 40 H 1.08999 * 109.47219 * 60.00299 * 20 19 18 41 41 H 1.09000 * 109.47339 * 180.02562 * 20 19 18 42 42 H 1.09000 * 109.47602 * 300.00193 * 20 19 18 43 43 H 1.09000 * 109.47287 * 59.99853 * 21 19 18 44 44 H 1.09000 * 109.46814 * 179.97438 * 21 19 18 45 45 H 1.08999 * 109.47184 * 299.99594 * 21 19 18 46 46 H 1.09000 * 109.47285 * 59.99991 * 23 22 19 47 47 H 1.08999 * 109.47174 * 180.02562 * 23 22 19 48 48 H 1.09000 * 109.46826 * 299.99886 * 23 22 19 49 49 H 1.09000 * 109.46966 * 60.00487 * 24 22 19 50 50 H 1.08999 * 109.46753 * 179.97438 * 24 22 19 51 51 H 1.08992 * 109.47470 * 299.99829 * 24 22 19 52 52 H 1.09002 * 109.46667 * 59.99850 * 25 22 19 53 53 H 1.08999 * 109.47325 * 179.97438 * 25 22 19 54 54 H 1.08995 * 109.47257 * 300.00299 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4275 2.0142 -1.1831 5 6 2.8948 3.3157 -1.1827 6 6 2.9615 4.0284 -0.0002 7 6 2.5615 3.4415 1.1850 8 6 2.6339 4.2192 2.4738 9 8 3.7416 3.7555 3.2484 10 14 2.8555 6.0298 2.0950 11 1 1.7043 6.5116 1.2901 12 1 2.9275 6.7960 3.3650 13 1 4.1120 6.2248 1.3279 14 6 2.0924 2.1361 1.1874 15 8 1.6980 1.5567 2.3517 16 6 2.6721 0.7814 3.0531 17 6 2.0788 0.2929 4.3762 18 8 0.9996 -0.6055 4.1114 19 14 0.2841 -1.1963 5.4528 20 6 1.5388 -2.1280 6.4668 21 6 -0.4065 0.2110 6.4593 22 6 -1.0968 -2.3475 4.9642 23 6 -0.5290 -3.5032 4.1378 24 6 -1.7676 -2.9022 6.2224 25 6 -2.1275 -1.5829 4.1311 26 1 -0.3634 0.4361 0.9305 27 1 -0.3633 0.5879 -0.8429 28 1 -0.3633 -1.0239 -0.0877 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.3760 1.4596 -2.1084 32 1 3.2079 3.7763 -2.1081 33 1 3.3264 5.0449 -0.0025 34 1 1.7116 4.0760 3.0368 35 1 4.5973 3.8524 2.8083 36 1 3.5500 1.3956 3.2533 37 1 2.9599 -0.0765 2.4454 38 1 2.8482 -0.2226 4.9510 39 1 1.7101 1.1459 4.9458 40 1 2.3470 -1.4548 6.7527 41 1 1.0606 -2.5232 7.3630 42 1 1.9430 -2.9514 5.8780 43 1 -1.1407 0.7561 5.8660 44 1 -0.8851 -0.1839 7.3555 45 1 0.4017 0.8841 6.7452 46 1 0.2052 -4.0479 4.7313 47 1 -1.3370 -4.1765 3.8516 48 1 -0.0509 -3.1083 3.2414 49 1 -2.1720 -2.0791 6.8115 50 1 -2.5758 -3.5753 5.9365 51 1 -1.0332 -3.4470 6.8156 52 1 -1.6492 -1.1880 3.2347 53 1 -2.9352 -2.2565 3.8448 54 1 -2.5319 -0.7595 4.7197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11759810_10902662.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:05:23 Heat of formation + Delta-G solvation = -147.792707 kcal Electronic energy + Delta-G solvation = -29735.621512 eV Core-core repulsion = 25988.934349 eV Total energy + Delta-G solvation = -3746.687163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.203 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.38102 -38.75284 -37.74543 -37.34458 -36.80931 -34.98894 -32.05696 -30.89808 -29.62420 -29.21446 -29.04698 -27.82486 -27.36522 -26.67493 -24.99530 -23.59344 -22.65727 -21.57625 -20.40021 -19.07285 -18.27688 -17.73994 -17.14683 -16.80495 -16.42654 -16.11550 -15.90790 -15.71265 -15.53549 -15.06540 -14.85703 -14.78122 -14.68974 -14.57095 -14.49220 -14.21095 -13.96420 -13.73202 -13.51269 -13.36906 -13.20419 -13.17458 -13.12970 -12.93816 -12.91474 -12.70940 -12.62627 -12.38825 -12.23192 -12.08371 -11.99196 -11.85136 -11.79548 -11.68715 -11.56055 -11.51345 -11.15881 -10.71609 -10.32640 -10.28882 -10.03192 -9.75805 -9.48207 0.19596 0.26013 1.16854 1.42024 1.52979 1.55937 1.82165 1.90429 2.15240 2.42860 2.51585 2.94148 3.53795 3.72617 3.78655 3.98832 4.12380 4.13613 4.14202 4.16459 4.28198 4.36344 4.40492 4.46291 4.49764 4.52125 4.56988 4.60599 4.66481 4.69477 4.74841 4.78706 4.80354 4.81554 4.83450 4.84793 4.91652 4.99883 5.01415 5.07792 5.10548 5.10929 5.18069 5.21808 5.35034 5.37526 5.39391 5.42774 5.45226 5.47199 5.54404 5.60220 5.61913 5.65137 5.81328 6.67913 6.71520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.112 4.112 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.146 4.146 8 C -0.074 4.074 9 O -0.545 6.545 10 Si 0.985 3.015 11 H -0.265 1.265 12 H -0.274 1.274 13 H -0.241 1.241 14 C 0.108 3.892 15 O -0.332 6.332 16 C 0.065 3.935 17 C 0.081 3.919 18 O -0.632 6.632 19 Si 1.313 2.687 20 C -0.516 4.516 21 C -0.519 4.519 22 C -0.380 4.380 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.134 4.134 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.387 0.613 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.050 0.950 51 H 0.064 0.936 52 H 0.054 0.946 53 H 0.048 0.952 54 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -0.035 -0.940 3.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 C -0.112 4.112 4 C -0.125 4.125 5 C -0.138 4.138 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.184 4.184 9 O -0.352 6.352 10 Si 0.809 3.191 11 H -0.189 1.189 12 H -0.199 1.199 13 H -0.164 1.164 14 C 0.064 3.936 15 O -0.250 6.250 16 C -0.009 4.009 17 C 0.006 3.994 18 O -0.592 6.592 19 Si 1.443 2.557 20 C -0.618 4.618 21 C -0.620 4.620 22 C -0.422 4.422 23 C -0.192 4.192 24 C -0.198 4.198 25 C -0.192 4.192 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.128 0.872 35 H 0.236 0.764 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.083 0.917 52 H 0.073 0.927 53 H 0.067 0.933 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.639 0.701 -0.889 2.872 hybrid contribution 0.036 -0.478 0.089 0.488 sum 2.675 0.223 -0.800 2.801 Atomic orbital electron populations 1.21627 0.94545 1.01856 1.01487 1.20481 0.96475 0.91645 1.03065 1.20539 0.99965 0.97505 0.93224 1.21293 0.98005 0.95542 0.97618 1.21409 0.99211 0.94442 0.98743 1.21229 1.00444 1.00649 0.92228 1.20727 1.01610 0.95695 0.96608 1.24908 0.93391 1.08374 0.91711 1.86482 1.17296 1.86690 1.44762 0.85206 0.81251 0.73501 0.79114 1.18892 1.19941 1.16418 1.18491 0.97815 0.91284 0.85964 1.86004 1.38094 1.67239 1.33649 1.23046 0.91091 0.94184 0.92593 1.22239 0.89199 0.92421 0.95515 1.85389 1.50539 1.62713 1.60516 0.76253 0.62719 0.62975 0.53767 1.27066 1.13671 1.09959 1.11063 1.27142 1.07494 1.16390 1.11000 1.25877 1.10336 1.06561 0.99460 1.21523 1.00627 0.97363 0.99692 1.21602 1.00688 1.01090 0.96393 1.21507 0.98389 0.99639 0.99622 0.93337 0.93042 0.91864 0.90129 0.91034 0.83910 0.83350 0.84430 0.87210 0.76425 0.89856 0.92365 0.88850 0.91514 0.90891 0.90412 0.90904 0.91703 0.90502 0.91272 0.91984 0.93360 0.92556 0.92065 0.93087 0.91677 0.92739 0.93313 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.46 9.89 71.98 0.71 0.25 16 2 C -0.08 -0.19 5.74 29.85 0.17 -0.02 16 3 C -0.11 -0.42 5.15 -19.77 -0.10 -0.52 16 4 C -0.11 -0.09 9.67 22.26 0.22 0.12 16 5 C -0.12 0.05 10.04 22.28 0.22 0.27 16 6 C -0.13 -0.08 8.66 22.25 0.19 0.11 16 7 C -0.15 -0.42 5.27 -19.77 -0.10 -0.53 16 8 C -0.07 -0.07 2.38 71.24 0.17 0.09 16 9 O -0.55 0.20 11.42 -148.98 -1.70 -1.50 16 10 Si 0.99 -0.46 25.49 68.60 1.75 1.29 16 11 H -0.26 -0.50 7.11 99.48 0.71 0.21 16 12 H -0.27 -0.77 7.11 99.48 0.71 -0.06 16 13 H -0.24 0.61 6.73 99.48 0.67 1.28 16 14 C 0.11 0.58 5.67 22.51 0.13 0.70 16 15 O -0.33 -2.11 8.75 -87.74 -0.77 -2.87 16 16 C 0.06 0.13 6.12 71.98 0.44 0.58 16 17 C 0.08 0.02 5.50 71.98 0.40 0.42 16 18 O -0.63 -1.49 8.52 -144.34 -1.23 -2.72 16 19 Si 1.31 -1.10 8.45 68.60 0.58 -0.53 16 20 C -0.52 0.83 8.50 113.37 0.96 1.79 16 21 C -0.52 -0.37 8.50 113.37 0.96 0.60 16 22 C -0.38 -0.31 0.53 -10.79 -0.01 -0.31 16 23 C -0.13 -0.16 7.85 71.98 0.56 0.41 16 24 C -0.14 0.03 7.85 71.98 0.56 0.59 16 25 C -0.13 -0.34 7.85 71.98 0.56 0.22 16 26 H 0.05 0.33 8.14 -2.39 -0.02 0.32 16 27 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.08 -0.04 8.02 -2.39 -0.02 -0.05 16 30 H 0.07 0.26 6.03 -2.39 -0.01 0.25 16 31 H 0.14 -0.43 8.05 -2.91 -0.02 -0.45 16 32 H 0.15 -0.76 8.06 -2.91 -0.02 -0.79 16 33 H 0.14 -0.37 4.89 -2.91 -0.01 -0.38 16 34 H 0.11 0.29 7.83 -2.38 -0.02 0.27 16 35 H 0.39 -2.74 8.70 -74.05 -0.64 -3.39 16 36 H 0.08 0.03 6.64 -2.39 -0.02 0.01 16 37 H 0.06 0.10 6.63 -2.39 -0.02 0.09 16 38 H 0.09 -0.44 7.21 -2.38 -0.02 -0.46 16 39 H 0.07 -0.01 7.21 -2.39 -0.02 -0.03 16 40 H 0.07 -0.20 7.48 -2.39 -0.02 -0.22 16 41 H 0.08 -0.17 7.79 -2.39 -0.02 -0.18 16 42 H 0.07 -0.10 7.79 -2.39 -0.02 -0.12 16 43 H 0.06 0.16 7.79 -2.39 -0.02 0.14 16 44 H 0.08 -0.03 7.79 -2.39 -0.02 -0.05 16 45 H 0.07 0.01 7.48 -2.39 -0.02 -0.01 16 46 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 47 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 48 H 0.06 0.11 7.97 -2.39 -0.02 0.09 16 49 H 0.06 -0.08 7.79 -2.39 -0.02 -0.10 16 50 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 51 H 0.06 -0.13 7.79 -2.39 -0.02 -0.15 16 52 H 0.05 0.21 7.97 -2.39 -0.02 0.19 16 53 H 0.05 0.14 8.14 -2.39 -0.02 0.12 16 54 H 0.06 0.10 7.80 -2.39 -0.02 0.08 16 Total: 0.00 -10.28 420.07 5.61 -4.67 By element: Atomic # 1 Polarization: -4.03 SS G_CDS: 0.92 Total: -3.11 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 6.06 Total: 4.77 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -3.70 Total: -7.10 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.33 Total: 0.76 kcal Total: -10.28 5.61 -4.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11759810_10902662.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.126 kcal (2) G-P(sol) polarization free energy of solvation -10.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds