Wall clock time and date at job start Mon Mar 8 2021 07:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.46988 * 2 1 4 4 C 1.50702 * 109.47245 * 239.99806 * 2 1 3 5 5 C 1.38254 * 119.98388 * 104.99828 * 4 2 1 6 6 C 1.38256 * 120.12494 * 180.02562 * 5 4 2 7 7 C 1.38183 * 120.09508 * 359.96213 * 6 5 4 8 8 C 1.38657 * 119.96997 * 0.02562 * 7 6 5 9 9 O 1.35957 * 120.06177 * 179.97438 * 8 7 6 10 10 C 1.42898 * 117.00223 * 0.02562 * 9 8 7 11 11 C 1.52995 * 109.47243 * 179.97438 * 10 9 8 12 12 H 1.08999 * 112.84933 * 316.19925 * 11 10 9 13 13 C 1.53781 * 113.69221 * 87.46495 * 11 10 9 14 14 C 1.54049 * 87.08031 * 139.98770 * 13 11 10 15 15 H 1.09000 * 113.61076 * 89.06984 * 14 13 11 16 16 O 1.42891 * 113.69771 * 220.05337 * 14 13 11 17 17 C 1.53781 * 113.61503 * 185.00084 * 11 10 9 18 18 C 1.38335 * 119.98255 * 285.25308 * 4 2 1 19 19 F 1.35101 * 120.04913 * 359.97438 * 18 4 2 20 20 H 0.96691 * 114.00116 * 60.00419 * 1 2 3 21 21 H 1.09003 * 109.47394 * 119.99439 * 2 1 3 22 22 H 1.48503 * 109.99888 * 298.67837 * 3 2 1 23 23 H 1.48497 * 110.00319 * 59.99866 * 3 2 1 24 24 H 1.07995 * 119.93693 * 0.02562 * 5 4 2 25 25 H 1.07999 * 119.95577 * 179.97438 * 6 5 4 26 26 H 1.07999 * 120.01589 * 179.97438 * 7 6 5 27 27 H 1.09000 * 109.47276 * 59.99726 * 10 9 8 28 28 H 1.09001 * 109.46942 * 300.00101 * 10 9 8 29 29 H 1.09005 * 113.61471 * 254.54353 * 13 11 10 30 30 H 1.08996 * 113.61178 * 25.35695 * 13 11 10 31 31 H 0.96702 * 114.00033 * 277.42089 * 16 14 13 32 32 H 1.09002 * 113.61445 * 334.48413 * 17 11 10 33 33 H 1.09002 * 113.61408 * 105.30144 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.4539 0.0172 -2.2835 6 6 2.9151 -0.6315 -3.4139 7 6 2.8560 -2.0098 -3.4945 8 6 2.3330 -2.7435 -2.4406 9 8 2.2735 -4.0995 -2.5182 10 6 2.7682 -4.7033 -3.7151 11 6 2.6201 -6.2230 -3.6187 12 1 2.9212 -6.6168 -2.6480 13 6 1.2540 -6.7422 -4.0973 14 6 2.0153 -7.9123 -4.7487 15 1 2.1514 -8.7672 -4.0863 16 8 1.5124 -8.2796 -6.0348 17 6 3.2358 -6.9786 -4.8081 18 6 1.8646 -2.0900 -1.3078 19 9 1.3498 -2.8011 -0.2809 20 1 -0.3933 0.4416 -0.7650 21 1 1.7924 -0.5137 0.8900 22 1 1.5879 2.4585 -1.2243 23 1 1.5615 2.4679 1.2084 24 1 2.5018 1.0944 -2.2229 25 1 3.3224 -0.0604 -4.2351 26 1 3.2163 -2.5152 -4.3783 27 1 3.8204 -4.4485 -3.8425 28 1 2.1995 -4.3358 -4.5693 29 1 0.5943 -7.0484 -3.2853 30 1 0.7641 -6.0846 -4.8153 31 1 0.7447 -8.8668 -6.0039 32 1 3.2884 -6.3864 -5.7216 33 1 4.1769 -7.4745 -4.5703 There are 46 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 46 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11948474_11354860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:12:41 Heat of formation + Delta-G solvation = -106.816758 kcal Electronic energy + Delta-G solvation = -18740.499167 eV Core-core repulsion = 15455.803555 eV Total energy + Delta-G solvation = -3284.695612 eV No. of doubly occupied orbitals = 46 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 255.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.91813 -41.35428 -40.28273 -39.08837 -37.48871 -36.04465 -32.46403 -31.42457 -29.17079 -27.01656 -26.76960 -23.97901 -23.77344 -22.25904 -20.66347 -19.43421 -18.71618 -18.43670 -18.09596 -17.53914 -17.32297 -16.64848 -16.23877 -16.04646 -15.83726 -15.77229 -15.73877 -14.80511 -14.43386 -14.30569 -13.98305 -13.50159 -13.36105 -13.17481 -12.98759 -12.61243 -12.41813 -12.34571 -11.98092 -11.76147 -11.72797 -11.26926 -10.79159 -10.71101 -9.99063 -9.32891 -4.91885 -0.06692 0.12869 1.22269 1.57930 1.87112 2.00368 2.41167 3.13070 3.25135 3.32536 3.41622 3.48519 3.51964 3.73629 3.81636 3.90534 3.96078 4.07985 4.18705 4.22563 4.26221 4.35567 4.55486 4.64769 4.71163 4.76097 4.86043 4.93577 4.96378 5.07172 5.10698 5.26378 5.32167 5.56388 6.21136 6.42211 6.83056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.101 4.101 3 Si 0.801 3.199 4 C -0.117 4.117 5 C -0.132 4.132 6 C -0.072 4.072 7 C -0.178 4.178 8 C 0.084 3.916 9 O -0.329 6.329 10 C 0.067 3.933 11 C -0.108 4.108 12 H 0.103 0.897 13 C -0.166 4.166 14 C 0.074 3.926 15 H 0.097 0.903 16 O -0.580 6.580 17 C -0.115 4.115 18 C 0.051 3.949 19 F -0.150 7.150 20 H 0.388 0.612 21 H 0.108 0.892 22 H -0.259 1.259 23 H -0.303 1.303 24 H 0.162 0.838 25 H 0.172 0.828 26 H 0.162 0.838 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.395 0.605 32 H 0.093 0.907 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 1.482 -4.298 6.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.208 4.208 3 Si 0.703 3.297 4 C -0.119 4.119 5 C -0.149 4.149 6 C -0.090 4.090 7 C -0.196 4.196 8 C 0.038 3.962 9 O -0.243 6.243 10 C -0.007 4.007 11 C -0.127 4.127 12 H 0.121 0.879 13 C -0.204 4.204 14 C 0.015 3.985 15 H 0.115 0.885 16 O -0.388 6.388 17 C -0.153 4.153 18 C 0.031 3.969 19 F -0.128 7.128 20 H 0.237 0.763 21 H 0.126 0.874 22 H -0.184 1.184 23 H -0.231 1.231 24 H 0.179 0.821 25 H 0.190 0.810 26 H 0.179 0.821 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.245 0.755 32 H 0.111 0.889 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.589 2.160 -3.784 6.328 hybrid contribution -1.903 -1.060 0.110 2.181 sum 2.686 1.100 -3.674 4.682 Atomic orbital electron populations 1.86620 1.18411 1.80714 1.50068 1.25551 0.83740 1.14033 0.97434 0.93628 0.89615 0.69313 0.77170 1.20341 1.01788 0.90799 0.98923 1.21267 0.99707 1.01374 0.92576 1.21434 0.96040 0.93225 0.98299 1.21562 1.03729 0.95790 0.98526 1.19254 0.98752 0.83690 0.94522 1.86116 1.79612 1.16468 1.42151 1.23069 1.00077 0.92637 0.84964 1.22302 0.98004 0.92229 1.00130 0.87861 1.23815 0.96794 0.99142 1.00643 1.23435 0.94973 0.95361 0.84707 0.88511 1.86469 1.51992 1.71167 1.29168 1.23050 0.97736 0.96884 0.97608 1.17268 1.04559 0.89634 0.85411 1.91446 1.85129 1.78672 1.57591 0.76307 0.87417 1.18440 1.23117 0.82059 0.81041 0.82096 0.89703 0.90697 0.91233 0.89763 0.75495 0.88888 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.58 12.88 -148.98 -1.92 -5.50 16 2 C -0.10 -0.29 2.45 71.24 0.17 -0.11 16 3 Si 0.80 -2.35 30.24 68.60 2.07 -0.28 16 4 C -0.12 -0.35 5.26 -19.84 -0.10 -0.46 16 5 C -0.13 0.39 8.66 22.28 0.19 0.58 16 6 C -0.07 0.35 10.04 22.26 0.22 0.57 16 7 C -0.18 0.27 9.04 22.36 0.20 0.47 16 8 C 0.08 0.47 6.69 22.53 0.15 0.62 16 9 O -0.33 -2.20 10.00 -93.07 -0.93 -3.13 16 10 C 0.07 -0.06 4.58 71.98 0.33 0.27 16 11 C -0.11 0.13 4.01 -10.27 -0.04 0.09 16 12 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 13 C -0.17 0.04 7.48 31.21 0.23 0.27 16 14 C 0.07 -0.11 5.23 31.21 0.16 0.06 16 15 H 0.10 -0.39 8.14 -2.39 -0.02 -0.41 16 16 O -0.58 -0.56 13.67 -148.98 -2.04 -2.59 16 17 C -0.12 0.30 7.46 31.12 0.23 0.54 16 18 C 0.05 0.44 7.25 22.45 0.16 0.61 16 19 F -0.15 -2.20 16.60 44.97 0.75 -1.45 16 20 H 0.39 -0.34 8.70 -74.06 -0.64 -0.99 16 21 H 0.11 0.46 7.91 -2.39 -0.02 0.44 16 22 H -0.26 0.66 6.68 99.48 0.66 1.32 16 23 H -0.30 -1.56 7.11 99.48 0.71 -0.85 16 24 H 0.16 -1.25 4.85 -2.91 -0.01 -1.27 16 25 H 0.17 -1.98 8.06 -2.91 -0.02 -2.00 16 26 H 0.16 -1.05 6.30 -2.91 -0.02 -1.07 16 27 H 0.08 -0.37 7.66 -2.39 -0.02 -0.39 16 28 H 0.07 -0.20 7.37 -2.39 -0.02 -0.22 16 29 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 30 H 0.08 0.09 7.90 -2.39 -0.02 0.07 16 31 H 0.39 -2.64 9.12 -74.06 -0.68 -3.32 16 32 H 0.09 -0.22 8.10 -2.39 -0.02 -0.23 16 33 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: 0.00 -18.55 283.88 -0.32 -18.87 By element: Atomic # 1 Polarization: -9.25 SS G_CDS: -0.17 Total: -9.42 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 1.92 Total: 3.51 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -4.89 Total: -11.22 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.75 Total: -1.45 kcal Atomic # 14 Polarization: -2.35 SS G_CDS: 2.07 Total: -0.28 kcal Total: -18.55 -0.32 -18.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11948474_11354860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.951 kcal (2) G-P(sol) polarization free energy of solvation -18.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds