Wall clock time and date at job start Mon Mar 8 2021 09:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86305 * 109.47327 * 2 1 4 4 C 1.50702 * 109.47542 * 239.99937 * 2 1 3 5 5 C 1.38248 * 119.98690 * 104.99834 * 4 2 1 6 6 C 1.38265 * 120.12705 * 180.02562 * 5 4 2 7 7 C 1.38184 * 120.09281 * 0.02562 * 6 5 4 8 8 C 1.38657 * 119.96964 * 359.97438 * 7 6 5 9 9 O 1.35957 * 120.06164 * 179.97438 * 8 7 6 10 10 C 1.42893 * 116.99986 * 0.02840 * 9 8 7 11 11 C 1.53005 * 109.47227 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.47293 * 54.99695 * 11 10 9 13 13 C 1.53002 * 109.47391 * 174.99819 * 11 10 9 14 14 C 1.53001 * 109.47048 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46826 * 299.99921 * 14 13 11 16 16 H 1.08998 * 109.47482 * 299.99977 * 15 14 13 17 17 O 1.42903 * 109.46686 * 180.02562 * 15 14 13 18 18 C 1.52992 * 109.46952 * 60.00398 * 15 14 13 19 19 C 1.52995 * 109.47521 * 299.99516 * 18 15 14 20 20 C 1.38332 * 119.97944 * 285.02529 * 4 2 1 21 21 F 1.35102 * 120.05240 * 359.95067 * 20 4 2 22 22 H 0.96694 * 114.00505 * 300.00863 * 1 2 3 23 23 H 1.09000 * 109.47186 * 119.99857 * 2 1 3 24 24 H 1.48510 * 109.99542 * 299.99725 * 3 2 1 25 25 H 1.48497 * 110.00251 * 61.31350 * 3 2 1 26 26 H 1.08000 * 119.94127 * 0.02562 * 5 4 2 27 27 H 1.08000 * 119.95136 * 179.72470 * 6 5 4 28 28 H 1.08004 * 120.01262 * 179.97438 * 7 6 5 29 29 H 1.08996 * 109.47618 * 299.99488 * 10 9 8 30 30 H 1.09000 * 109.47402 * 59.99775 * 10 9 8 31 31 H 1.08996 * 109.46806 * 300.00293 * 13 11 10 32 32 H 1.08994 * 109.46574 * 60.00120 * 13 11 10 33 33 H 1.08998 * 109.47071 * 60.00150 * 14 13 11 34 34 H 1.09000 * 109.46895 * 180.02562 * 14 13 11 35 35 H 0.96699 * 114.00230 * 180.02562 * 17 15 14 36 36 H 1.09003 * 109.47311 * 59.99986 * 18 15 14 37 37 H 1.09007 * 109.46911 * 179.97438 * 18 15 14 38 38 H 1.09003 * 109.47211 * 300.00530 * 19 18 15 39 39 H 1.09001 * 109.47376 * 180.02562 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.4539 0.0172 -2.2834 6 6 2.9152 -0.6316 -3.4139 7 6 2.8549 -2.0097 -3.4950 8 6 2.3316 -2.7434 -2.4412 9 8 2.2709 -4.0993 -2.5193 10 6 2.7648 -4.7030 -3.7166 11 6 2.6154 -6.2227 -3.6207 12 1 1.5767 -6.4727 -3.4044 13 6 3.0275 -6.8605 -4.9490 14 6 2.8774 -8.3801 -4.8533 15 6 3.7734 -8.9115 -3.7326 16 1 4.8122 -8.6619 -3.9487 17 8 3.6337 -10.3309 -3.6437 18 6 3.3613 -8.2737 -2.4045 19 6 3.5113 -6.7541 -2.5001 20 6 1.8690 -2.0903 -1.3058 21 9 1.3588 -2.8017 -0.2768 22 1 -0.3934 0.4418 0.7649 23 1 1.7923 -0.5138 0.8900 24 1 1.5615 2.4679 -1.2086 25 1 1.5878 2.4587 1.2241 26 1 2.5019 1.0944 -2.2230 27 1 3.3188 -0.0601 -4.2367 28 1 3.2153 -2.5151 -4.3789 29 1 2.1962 -4.3349 -4.5705 30 1 3.8171 -4.4491 -3.8442 31 1 2.3889 -6.4822 -5.7472 32 1 4.0661 -6.6105 -5.1652 33 1 1.8386 -8.6297 -4.6372 34 1 3.1714 -8.8345 -5.7994 35 1 4.1742 -10.7368 -2.9521 36 1 2.3225 -8.5234 -2.1883 37 1 3.9994 -8.6526 -1.6060 38 1 4.5501 -6.5044 -2.7162 39 1 3.2181 -6.2998 -1.5536 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_11948474_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:35:40 Heat of formation + Delta-G solvation = -148.248982 kcal Electronic energy + Delta-G solvation = -22454.865270 eV Core-core repulsion = 18857.297784 eV Total energy + Delta-G solvation = -3597.567486 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.64688 -41.27704 -40.13400 -39.00310 -37.52993 -36.67178 -32.58766 -32.23714 -31.89604 -30.60159 -27.38040 -26.29884 -23.98501 -23.57777 -22.97450 -21.79642 -20.95852 -19.14002 -18.62608 -18.27801 -18.18115 -17.87965 -17.26036 -16.56320 -16.19178 -16.05065 -15.70494 -15.59790 -15.52673 -15.37779 -14.79318 -14.50611 -14.04818 -13.91616 -13.76438 -13.50246 -13.30178 -13.29104 -13.17196 -12.79253 -12.60628 -12.20967 -12.12301 -11.95609 -11.78324 -11.67058 -11.64870 -11.16912 -10.75009 -10.54430 -9.92439 -9.22604 -5.02016 -0.01564 0.19668 1.17766 1.53510 1.85510 1.97865 2.41746 3.11499 3.21698 3.25256 3.53327 3.58503 3.64565 3.71219 3.82019 3.97715 4.00592 4.03087 4.06072 4.14714 4.20327 4.25601 4.26995 4.37872 4.40937 4.48384 4.57279 4.71741 4.87074 4.90280 4.97278 4.98531 5.02868 5.08609 5.09164 5.10918 5.25949 5.27802 5.35585 5.55312 6.25837 6.40042 6.68820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.080 4.080 3 Si 0.699 3.301 4 C -0.071 4.071 5 C -0.128 4.128 6 C -0.083 4.083 7 C -0.178 4.178 8 C 0.100 3.900 9 O -0.304 6.304 10 C 0.062 3.938 11 C -0.088 4.088 12 H 0.086 0.914 13 C -0.109 4.109 14 C -0.112 4.112 15 C 0.103 3.897 16 H 0.055 0.945 17 O -0.569 6.569 18 C -0.152 4.152 19 C -0.111 4.111 20 C 0.093 3.907 21 F -0.126 7.126 22 H 0.382 0.618 23 H 0.078 0.922 24 H -0.252 1.252 25 H -0.259 1.259 26 H 0.139 0.861 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.379 0.621 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 2.026 -1.064 5.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.189 4.189 3 Si 0.599 3.401 4 C -0.072 4.072 5 C -0.146 4.146 6 C -0.101 4.101 7 C -0.197 4.197 8 C 0.053 3.947 9 O -0.217 6.217 10 C -0.013 4.013 11 C -0.107 4.107 12 H 0.104 0.896 13 C -0.147 4.147 14 C -0.149 4.149 15 C 0.044 3.956 16 H 0.073 0.927 17 O -0.375 6.375 18 C -0.190 4.190 19 C -0.149 4.149 20 C 0.073 3.927 21 F -0.104 7.104 22 H 0.230 0.770 23 H 0.096 0.904 24 H -0.177 1.177 25 H -0.184 1.184 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.226 0.774 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.103 2.472 -1.933 5.166 hybrid contribution -0.757 -0.371 1.012 1.317 sum 3.347 2.100 -0.922 4.057 Atomic orbital electron populations 1.86605 1.17290 1.80309 1.49759 1.24797 0.84987 1.11555 0.97520 0.94837 0.91319 0.73610 0.80308 1.19142 1.00642 0.90799 0.96607 1.20925 1.00523 1.00309 0.92854 1.20971 0.97818 0.93534 0.97751 1.21232 1.04597 0.95135 0.98746 1.18962 0.98213 0.83560 0.93925 1.86134 1.79073 1.15860 1.40650 1.22985 0.99096 0.93534 0.85699 1.21239 1.01862 0.91278 0.96288 0.89605 1.21472 1.02319 0.94710 0.96183 1.21441 1.00646 0.94399 0.98419 1.21845 0.98412 0.80516 0.94809 0.92713 1.86518 1.70872 1.20187 1.59934 1.22278 1.02985 0.95955 0.97796 1.21514 0.99519 0.94781 0.99083 1.16736 1.02454 0.88503 0.85038 1.91510 1.84684 1.77980 1.56232 0.77000 0.90369 1.17658 1.18374 0.84362 0.84391 0.84215 0.91502 0.91487 0.90726 0.91204 0.90912 0.90781 0.77363 0.90918 0.91474 0.91713 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -1.28 12.86 -35.23 -0.45 -1.73 16 2 C -0.08 -0.08 2.44 36.01 0.09 0.01 16 3 Si 0.70 -0.77 30.20 -169.99 -5.13 -5.91 16 4 C -0.07 -0.16 5.30 -104.58 -0.55 -0.71 16 5 C -0.13 -0.05 8.66 -39.57 -0.34 -0.39 16 6 C -0.08 0.05 10.04 -39.59 -0.40 -0.34 16 7 C -0.18 -0.01 9.04 -39.45 -0.36 -0.37 16 8 C 0.10 0.26 6.69 -39.18 -0.26 -0.01 16 9 O -0.30 -0.77 9.54 -19.60 -0.19 -0.96 16 10 C 0.06 -0.05 4.12 37.16 0.15 0.10 16 11 C -0.09 0.08 2.43 -90.61 -0.22 -0.14 16 12 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 13 C -0.11 0.21 5.20 -26.73 -0.14 0.07 16 14 C -0.11 0.04 5.57 -26.73 -0.15 -0.11 16 15 C 0.10 -0.02 3.47 -26.73 -0.09 -0.11 16 16 H 0.05 -0.05 8.14 -51.93 -0.42 -0.47 16 17 O -0.57 -0.67 13.32 -35.23 -0.47 -1.14 16 18 C -0.15 0.08 5.54 -26.74 -0.15 -0.07 16 19 C -0.11 0.07 5.10 -26.73 -0.14 -0.07 16 20 C 0.09 0.36 7.25 -39.30 -0.29 0.08 16 21 F -0.13 -0.72 16.60 2.25 0.04 -0.68 16 22 H 0.38 -0.72 8.74 45.56 0.40 -0.32 16 23 H 0.08 0.01 7.90 -51.93 -0.41 -0.40 16 24 H -0.25 -0.31 6.75 56.52 0.38 0.07 16 25 H -0.26 -0.22 7.11 56.52 0.40 0.18 16 26 H 0.14 -0.18 4.89 -52.49 -0.26 -0.44 16 27 H 0.14 -0.46 8.06 -52.49 -0.42 -0.88 16 28 H 0.14 -0.32 6.30 -52.48 -0.33 -0.66 16 29 H 0.07 -0.12 7.66 -51.93 -0.40 -0.52 16 30 H 0.07 -0.14 7.66 -51.93 -0.40 -0.54 16 31 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 32 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.07 0.04 8.14 -51.93 -0.42 -0.39 16 34 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 35 H 0.38 -1.01 9.08 45.56 0.41 -0.59 16 36 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 37 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 38 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.07 0.06 7.82 -51.93 -0.41 -0.35 16 LS Contribution 318.62 15.07 4.80 4.80 Total: 0.00 -7.34 318.62 -9.08 -16.42 By element: Atomic # 1 Polarization: -3.92 SS G_CDS: -4.83 Total: -8.75 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.84 Total: -2.05 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: -1.11 Total: -3.83 kcal Atomic # 9 Polarization: -0.72 SS G_CDS: 0.04 Total: -0.68 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.13 Total: -5.91 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -7.34 -9.08 -16.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11948474_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.827 kcal (2) G-P(sol) polarization free energy of solvation -7.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds