Wall clock time and date at job start Mon Mar 8 2021 09:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86305 * 109.47327 * 2 1 4 4 C 1.50702 * 109.47542 * 239.99937 * 2 1 3 5 5 C 1.38248 * 119.98690 * 104.99834 * 4 2 1 6 6 C 1.38265 * 120.12705 * 180.02562 * 5 4 2 7 7 C 1.38184 * 120.09281 * 0.02562 * 6 5 4 8 8 C 1.38657 * 119.96964 * 359.97438 * 7 6 5 9 9 O 1.35957 * 120.06164 * 179.97438 * 8 7 6 10 10 C 1.42893 * 116.99986 * 0.02840 * 9 8 7 11 11 C 1.53005 * 109.47227 * 179.97438 * 10 9 8 12 12 H 1.09003 * 109.47293 * 54.99695 * 11 10 9 13 13 C 1.53002 * 109.47391 * 174.99819 * 11 10 9 14 14 C 1.53001 * 109.47048 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.46826 * 299.99921 * 14 13 11 16 16 H 1.08998 * 109.47482 * 299.99977 * 15 14 13 17 17 O 1.42903 * 109.46686 * 180.02562 * 15 14 13 18 18 C 1.52992 * 109.46952 * 60.00398 * 15 14 13 19 19 C 1.52995 * 109.47521 * 299.99516 * 18 15 14 20 20 C 1.38332 * 119.97944 * 285.02529 * 4 2 1 21 21 F 1.35102 * 120.05240 * 359.95067 * 20 4 2 22 22 H 0.96694 * 114.00505 * 300.00863 * 1 2 3 23 23 H 1.09000 * 109.47186 * 119.99857 * 2 1 3 24 24 H 1.48510 * 109.99542 * 299.99725 * 3 2 1 25 25 H 1.48497 * 110.00251 * 61.31350 * 3 2 1 26 26 H 1.08000 * 119.94127 * 0.02562 * 5 4 2 27 27 H 1.08000 * 119.95136 * 179.72470 * 6 5 4 28 28 H 1.08004 * 120.01262 * 179.97438 * 7 6 5 29 29 H 1.08996 * 109.47618 * 299.99488 * 10 9 8 30 30 H 1.09000 * 109.47402 * 59.99775 * 10 9 8 31 31 H 1.08996 * 109.46806 * 300.00293 * 13 11 10 32 32 H 1.08994 * 109.46574 * 60.00120 * 13 11 10 33 33 H 1.08998 * 109.47071 * 60.00150 * 14 13 11 34 34 H 1.09000 * 109.46895 * 180.02562 * 14 13 11 35 35 H 0.96699 * 114.00230 * 180.02562 * 17 15 14 36 36 H 1.09003 * 109.47311 * 59.99986 * 18 15 14 37 37 H 1.09007 * 109.46911 * 179.97438 * 18 15 14 38 38 H 1.09003 * 109.47211 * 300.00530 * 19 18 15 39 39 H 1.09001 * 109.47376 * 180.02562 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.4539 0.0172 -2.2834 6 6 2.9152 -0.6316 -3.4139 7 6 2.8549 -2.0097 -3.4950 8 6 2.3316 -2.7434 -2.4412 9 8 2.2709 -4.0993 -2.5193 10 6 2.7648 -4.7030 -3.7166 11 6 2.6154 -6.2227 -3.6207 12 1 1.5767 -6.4727 -3.4044 13 6 3.0275 -6.8605 -4.9490 14 6 2.8774 -8.3801 -4.8533 15 6 3.7734 -8.9115 -3.7326 16 1 4.8122 -8.6619 -3.9487 17 8 3.6337 -10.3309 -3.6437 18 6 3.3613 -8.2737 -2.4045 19 6 3.5113 -6.7541 -2.5001 20 6 1.8690 -2.0903 -1.3058 21 9 1.3588 -2.8017 -0.2768 22 1 -0.3934 0.4418 0.7649 23 1 1.7923 -0.5138 0.8900 24 1 1.5615 2.4679 -1.2086 25 1 1.5878 2.4587 1.2241 26 1 2.5019 1.0944 -2.2230 27 1 3.3188 -0.0601 -4.2367 28 1 3.2153 -2.5151 -4.3789 29 1 2.1962 -4.3349 -4.5705 30 1 3.8171 -4.4491 -3.8442 31 1 2.3889 -6.4822 -5.7472 32 1 4.0661 -6.6105 -5.1652 33 1 1.8386 -8.6297 -4.6372 34 1 3.1714 -8.8345 -5.7994 35 1 4.1742 -10.7368 -2.9521 36 1 2.3225 -8.5234 -2.1883 37 1 3.9994 -8.6526 -1.6060 38 1 4.5501 -6.5044 -2.7162 39 1 3.2181 -6.2998 -1.5536 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11948474_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:35:40 Heat of formation + Delta-G solvation = -147.510912 kcal Electronic energy + Delta-G solvation = -22454.833265 eV Core-core repulsion = 18857.297784 eV Total energy + Delta-G solvation = -3597.535481 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.91524 -41.30013 -40.11246 -39.04345 -37.59941 -36.68140 -32.61350 -32.22624 -31.84312 -30.63549 -27.37590 -26.29169 -23.96746 -23.58495 -22.97557 -21.79612 -20.90677 -19.20160 -18.72792 -18.35064 -18.20785 -17.96001 -17.30594 -16.60892 -16.22298 -16.13545 -15.78066 -15.61931 -15.49960 -15.41255 -14.78407 -14.51781 -14.11478 -13.95058 -13.77730 -13.53854 -13.28721 -13.25088 -13.16272 -12.79419 -12.58920 -12.17763 -12.10179 -11.93515 -11.80869 -11.61645 -11.59616 -11.11333 -10.74286 -10.58848 -9.96880 -9.30686 -4.93462 -0.05755 0.14462 1.21435 1.59802 1.88202 1.99255 2.40086 3.15203 3.21021 3.25749 3.59840 3.62699 3.68099 3.73594 3.87850 4.00527 4.02468 4.08293 4.11656 4.17768 4.26155 4.31830 4.34135 4.45815 4.50275 4.52447 4.60614 4.79349 4.87282 4.95561 4.96271 5.04146 5.05963 5.10688 5.13069 5.16219 5.27892 5.29962 5.40389 5.57276 6.24520 6.48987 6.83906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.105 4.105 3 Si 0.798 3.202 4 C -0.083 4.083 5 C -0.134 4.134 6 C -0.073 4.073 7 C -0.176 4.176 8 C 0.087 3.913 9 O -0.328 6.328 10 C 0.058 3.942 11 C -0.086 4.086 12 H 0.067 0.933 13 C -0.101 4.101 14 C -0.115 4.115 15 C 0.102 3.898 16 H 0.067 0.933 17 O -0.591 6.591 18 C -0.148 4.148 19 C -0.108 4.108 20 C 0.049 3.951 21 F -0.149 7.149 22 H 0.396 0.604 23 H 0.078 0.922 24 H -0.278 1.278 25 H -0.285 1.285 26 H 0.156 0.844 27 H 0.173 0.827 28 H 0.167 0.833 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.393 0.607 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.248 3.196 -2.598 7.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.211 4.211 3 Si 0.699 3.301 4 C -0.084 4.084 5 C -0.151 4.151 6 C -0.091 4.091 7 C -0.194 4.194 8 C 0.041 3.959 9 O -0.242 6.242 10 C -0.017 4.017 11 C -0.104 4.104 12 H 0.085 0.915 13 C -0.138 4.138 14 C -0.152 4.152 15 C 0.043 3.957 16 H 0.085 0.915 17 O -0.400 6.400 18 C -0.186 4.186 19 C -0.146 4.146 20 C 0.030 3.970 21 F -0.128 7.128 22 H 0.246 0.754 23 H 0.096 0.904 24 H -0.205 1.205 25 H -0.212 1.212 26 H 0.174 0.826 27 H 0.191 0.809 28 H 0.185 0.815 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.621 3.607 -3.453 7.519 hybrid contribution -1.252 -0.783 1.491 2.098 sum 4.369 2.825 -1.961 5.560 Atomic orbital electron populations 1.86551 1.18406 1.81107 1.50885 1.25307 0.84423 1.14010 0.97332 0.93707 0.89630 0.69582 0.77131 1.19434 1.00902 0.90427 0.97682 1.21216 1.00132 1.01138 0.92662 1.21429 0.96124 0.93464 0.98043 1.21578 1.03620 0.95553 0.98664 1.19189 0.98656 0.83797 0.94279 1.86109 1.79560 1.16201 1.42323 1.23177 1.00331 0.93079 0.85066 1.21202 1.00734 0.91675 0.96815 0.91457 1.21425 1.03468 0.93304 0.95623 1.21480 0.99753 0.95647 0.98334 1.21918 0.99048 0.79975 0.94715 0.91467 1.86481 1.71636 1.21006 1.60834 1.22227 1.02083 0.96123 0.98165 1.21473 1.00249 0.94465 0.98396 1.17242 1.04741 0.89497 0.85569 1.91432 1.85392 1.78583 1.57372 0.75385 0.90425 1.20450 1.21229 0.82647 0.80914 0.81527 0.90191 0.89587 0.89716 0.89614 0.92432 0.90832 0.75738 0.92610 0.90773 0.90443 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.64 12.86 -148.98 -1.92 -5.55 16 2 C -0.10 -0.34 2.44 71.24 0.17 -0.16 16 3 Si 0.80 -2.04 30.20 68.60 2.07 0.03 16 4 C -0.08 -0.46 5.30 -19.84 -0.11 -0.56 16 5 C -0.13 0.01 8.66 22.28 0.19 0.20 16 6 C -0.07 0.24 10.04 22.26 0.22 0.47 16 7 C -0.18 0.21 9.04 22.36 0.20 0.41 16 8 C 0.09 0.52 6.69 22.53 0.15 0.67 16 9 O -0.33 -2.07 9.54 -93.06 -0.89 -2.96 16 10 C 0.06 -0.12 4.12 71.98 0.30 0.18 16 11 C -0.09 0.12 2.43 -10.79 -0.03 0.09 16 12 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 13 C -0.10 0.46 5.20 30.60 0.16 0.62 16 14 C -0.11 0.05 5.57 30.60 0.17 0.22 16 15 C 0.10 -0.02 3.47 30.59 0.11 0.09 16 16 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 17 O -0.59 -1.65 13.32 -148.98 -1.98 -3.64 16 18 C -0.15 0.02 5.54 30.59 0.17 0.19 16 19 C -0.11 0.05 5.10 30.59 0.16 0.21 16 20 C 0.05 0.49 7.25 22.45 0.16 0.65 16 21 F -0.15 -2.23 16.60 44.97 0.75 -1.48 16 22 H 0.40 -0.86 8.74 -74.06 -0.65 -1.50 16 23 H 0.08 0.17 7.90 -2.39 -0.02 0.15 16 24 H -0.28 -0.46 6.75 99.48 0.67 0.21 16 25 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 26 H 0.16 -0.64 4.89 -2.91 -0.01 -0.66 16 27 H 0.17 -1.81 8.06 -2.91 -0.02 -1.83 16 28 H 0.17 -1.22 6.30 -2.91 -0.02 -1.24 16 29 H 0.08 -0.39 7.66 -2.39 -0.02 -0.40 16 30 H 0.09 -0.51 7.66 -2.39 -0.02 -0.53 16 31 H 0.08 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.39 -1.95 9.08 -74.06 -0.67 -2.62 16 36 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 38 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.06 0.20 7.82 -2.39 -0.02 0.18 16 Total: 0.00 -19.58 318.62 -0.18 -19.76 By element: Atomic # 1 Polarization: -9.20 SS G_CDS: -0.25 Total: -9.44 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 2.03 Total: 3.28 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -4.79 Total: -12.15 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.75 Total: -1.48 kcal Atomic # 14 Polarization: -2.04 SS G_CDS: 2.07 Total: 0.03 kcal Total: -19.58 -0.18 -19.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11948474_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.750 kcal (2) G-P(sol) polarization free energy of solvation -19.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds