Wall clock time and date at job start Mon Mar 8 2021 09:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.53004 * 109.47215 * 240.00405 * 2 1 3 5 5 Si 1.86295 * 109.47179 * 120.00097 * 2 1 3 6 6 C 1.86297 * 109.47300 * 300.00081 * 5 2 1 7 7 C 1.86302 * 109.47237 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.46953 * 60.00083 * 5 2 1 9 9 C 1.42907 * 114.00047 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.47325 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.46429 * 65.00746 * 10 9 8 12 12 C 1.42899 * 113.99649 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47405 * 179.97438 * 12 11 10 14 14 O 1.42903 * 109.46726 * 64.99720 * 13 12 11 15 15 C 1.35958 * 116.99807 * 180.02562 * 14 13 12 16 16 C 1.38619 * 120.06376 * 359.97438 * 15 14 13 17 17 C 1.38227 * 119.97301 * 180.02562 * 16 15 14 18 18 C 1.38213 * 120.09092 * 0.02562 * 17 16 15 19 19 C 1.38296 * 120.13104 * 359.97438 * 18 17 16 20 20 C 1.50695 * 119.99059 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.47357 * 255.00115 * 20 19 18 22 22 Si 1.86303 * 109.47000 * 14.99875 * 20 19 18 23 23 H 1.48500 * 109.46888 * 60.00026 * 22 20 19 24 24 H 1.48499 * 109.47204 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47121 * 300.00068 * 22 20 19 26 26 C 1.38301 * 120.02627 * 359.76826 * 19 18 17 27 27 F 1.35101 * 120.04548 * 180.25588 * 26 19 18 28 28 H 1.08999 * 109.47148 * 299.99729 * 1 2 3 29 29 H 1.09002 * 109.46857 * 60.00007 * 1 2 3 30 30 H 1.08997 * 109.46473 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47060 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47294 * 300.00259 * 3 2 1 33 33 H 1.09007 * 109.46816 * 59.99822 * 3 2 1 34 34 H 1.08998 * 109.46969 * 299.99762 * 4 2 1 35 35 H 1.09003 * 109.47109 * 59.99703 * 4 2 1 36 36 H 1.09005 * 109.46879 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47546 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47531 * 300.00429 * 6 5 2 39 39 H 1.09001 * 109.47051 * 59.99769 * 6 5 2 40 40 H 1.08999 * 109.46826 * 300.00012 * 7 5 2 41 41 H 1.08998 * 109.47222 * 59.99880 * 7 5 2 42 42 H 1.08994 * 109.47395 * 180.02562 * 7 5 2 43 43 H 1.09005 * 109.46610 * 60.00621 * 9 8 5 44 44 H 1.08995 * 109.47386 * 300.00783 * 9 8 5 45 45 H 1.08990 * 109.47090 * 305.00772 * 10 9 8 46 46 H 1.08992 * 109.46809 * 185.00065 * 10 9 8 47 47 H 1.09002 * 109.47445 * 59.99875 * 12 11 10 48 48 H 1.09002 * 109.47167 * 299.99793 * 12 11 10 49 49 H 1.09002 * 109.47398 * 184.99964 * 13 12 11 50 50 H 1.09001 * 109.47194 * 305.00145 * 13 12 11 51 51 H 1.07999 * 120.01348 * 0.02562 * 16 15 14 52 52 H 1.07995 * 119.95190 * 180.02562 * 17 16 15 53 53 H 1.08001 * 119.93511 * 180.02562 * 18 17 16 54 54 H 1.09000 * 109.47818 * 135.00061 * 20 19 18 55 55 H 0.96698 * 113.99894 * 59.99338 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8776 1.5215 8 8 1.6074 -2.4159 1.5210 9 6 2.0295 -3.1817 2.6513 10 6 1.4636 -4.5994 2.5470 11 8 2.0313 -5.2564 1.4120 12 6 1.5663 -6.5942 1.2221 13 6 2.2359 -7.1963 -0.0148 14 8 3.6416 -7.3135 0.2142 15 6 4.3900 -7.8341 -0.7944 16 6 3.7842 -8.2241 -1.9787 17 6 4.5467 -8.7537 -3.0027 18 6 5.9128 -8.8955 -2.8475 19 6 6.5214 -8.5077 -1.6678 20 6 8.0111 -8.6631 -1.5022 21 8 8.2818 -9.7731 -0.6438 22 14 8.7933 -8.9603 -3.1667 23 1 8.5120 -7.8068 -4.0588 24 1 10.2614 -9.1128 -3.0037 25 1 8.2299 -10.1974 -3.7647 26 6 5.7641 -7.9723 -0.6418 27 9 6.3589 -7.5885 0.5089 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1301 -0.7207 -1.2495 37 1 1.8930 -0.5142 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1502 1.5217 42 1 4.3774 -1.3918 2.4112 43 1 1.6653 -2.7119 3.5649 44 1 3.1184 -3.2255 2.6744 45 1 0.3806 -4.5509 2.4347 46 1 1.7108 -5.1566 3.4505 47 1 0.4853 -6.5868 1.0822 48 1 1.8151 -7.1931 2.0982 49 1 1.8163 -8.1829 -0.2113 50 1 2.0606 -6.5491 -0.8742 51 1 2.7168 -8.1143 -2.1011 52 1 4.0744 -9.0571 -3.9253 53 1 6.5062 -9.3091 -3.6494 54 1 8.4247 -7.7551 -1.0633 55 1 7.9416 -10.6165 -0.9724 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_34_11948474_16896868.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:40:40 Heat of formation + Delta-G solvation = -229.611922 kcal Electronic energy + Delta-G solvation = -32839.534622 eV Core-core repulsion = 28301.163344 eV Total energy + Delta-G solvation = -4538.371278 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 374.193 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.87776 -41.19658 -39.54796 -38.91573 -37.54620 -37.20774 -36.83502 -32.51608 -32.28323 -30.73211 -29.63957 -29.19399 -29.07664 -27.84660 -27.39464 -27.05052 -24.31400 -23.77338 -23.48189 -22.17872 -20.42609 -19.51524 -18.58494 -18.33282 -18.08396 -17.94958 -17.45151 -17.14526 -16.40075 -16.34607 -16.25246 -15.99506 -15.88694 -15.76593 -15.72352 -15.36269 -15.01941 -14.85766 -14.72787 -14.67712 -14.21883 -14.11017 -13.96114 -13.58624 -13.42350 -13.37952 -13.22355 -13.19872 -13.02888 -12.96623 -12.93077 -12.77168 -12.57398 -12.42213 -12.33285 -12.18056 -11.99461 -11.91436 -11.78944 -11.68972 -11.66319 -11.51293 -11.21252 -10.59410 -10.50482 -10.32205 -10.06065 -9.96118 -9.30215 -0.04823 0.14089 1.09932 1.45157 1.52373 1.55718 1.78850 1.88361 2.03732 2.11738 2.43012 2.48084 2.66752 3.18207 3.38390 3.58750 3.72951 3.95901 3.98094 4.05902 4.07944 4.11153 4.11771 4.14920 4.20771 4.27518 4.30812 4.40681 4.44697 4.47955 4.56694 4.57622 4.68298 4.68889 4.71620 4.76720 4.78082 4.80711 4.81399 4.82904 4.87596 4.96918 4.98872 5.08094 5.08737 5.09114 5.19140 5.26355 5.32491 5.39810 5.42634 5.50970 5.56402 5.56963 5.62466 6.20077 6.29288 6.66042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.380 4.380 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.311 2.689 6 C -0.513 4.513 7 C -0.521 4.521 8 O -0.634 6.634 9 C 0.075 3.925 10 C 0.054 3.946 11 O -0.402 6.402 12 C 0.057 3.943 13 C 0.053 3.947 14 O -0.326 6.326 15 C 0.086 3.914 16 C -0.178 4.178 17 C -0.073 4.073 18 C -0.142 4.142 19 C -0.122 4.122 20 C -0.098 4.098 21 O -0.553 6.553 22 Si 1.007 2.993 23 H -0.252 1.252 24 H -0.275 1.275 25 H -0.228 1.228 26 C 0.053 3.947 27 F -0.148 7.148 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.062 0.938 49 H 0.107 0.893 50 H 0.079 0.921 51 H 0.165 0.835 52 H 0.171 0.829 53 H 0.157 0.843 54 H 0.105 0.895 55 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 -2.147 -2.531 5.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.423 4.423 3 C -0.197 4.197 4 C -0.192 4.192 5 Si 1.441 2.559 6 C -0.615 4.615 7 C -0.622 4.622 8 O -0.594 6.594 9 C 0.000 4.000 10 C -0.022 4.022 11 O -0.322 6.322 12 C -0.019 4.019 13 C -0.021 4.021 14 O -0.240 6.240 15 C 0.039 3.961 16 C -0.197 4.197 17 C -0.091 4.091 18 C -0.160 4.160 19 C -0.123 4.123 20 C -0.206 4.206 21 O -0.360 6.360 22 Si 0.827 3.173 23 H -0.176 1.176 24 H -0.200 1.200 25 H -0.151 1.151 26 C 0.033 3.967 27 F -0.127 7.127 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.117 0.883 48 H 0.080 0.920 49 H 0.125 0.875 50 H 0.097 0.903 51 H 0.182 0.818 52 H 0.189 0.811 53 H 0.174 0.826 54 H 0.123 0.877 55 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -4.153 -1.844 -2.995 5.442 hybrid contribution -0.250 0.314 0.834 0.925 sum -4.403 -1.530 -2.161 5.138 Atomic orbital electron populations 1.21523 0.93891 1.01771 1.01999 1.25861 1.00661 1.02932 1.12800 1.21602 1.01098 0.94654 1.02395 1.21516 1.00665 0.99939 0.97119 0.76301 0.61888 0.53060 0.64688 1.27021 1.07079 1.09751 1.17645 1.27186 1.26411 1.04632 1.03974 1.85378 1.79154 1.46503 1.48347 1.22295 0.99124 0.90817 0.87807 1.22830 0.98548 0.92028 0.88833 1.87993 1.68692 1.26846 1.48646 1.22716 0.98688 0.83325 0.97190 1.23234 0.77300 1.02162 0.99386 1.86183 1.21674 1.77899 1.38258 1.19288 0.89663 0.97075 0.90051 1.21563 1.02481 1.03572 0.92068 1.21415 0.92924 0.95331 0.99415 1.21242 0.96327 1.02018 0.96406 1.20431 0.97291 1.00807 0.93800 1.25350 0.92758 0.93360 1.09107 1.86535 1.80892 1.18574 1.50024 0.84905 0.78222 0.82035 0.72108 1.17597 1.20035 1.15067 1.17244 0.88699 1.06258 0.84491 1.91447 1.83989 1.89390 1.47855 0.91816 0.93211 0.92593 0.92182 0.92945 0.91544 0.92843 0.93059 0.92737 0.90889 0.90307 0.90682 0.92073 0.90372 0.91521 0.88728 0.92338 0.91194 0.90554 0.88327 0.92009 0.87509 0.90325 0.81774 0.81123 0.82619 0.87698 0.76000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.15 7.85 71.98 0.56 0.42 16 2 C -0.38 -0.46 0.53 -10.79 -0.01 -0.46 16 3 C -0.14 0.00 7.85 71.98 0.56 0.56 16 4 C -0.14 -0.42 7.85 71.98 0.56 0.15 16 5 Si 1.31 -0.04 8.45 68.60 0.58 0.54 16 6 C -0.51 0.76 8.50 113.37 0.96 1.73 16 7 C -0.52 -1.26 8.50 113.37 0.96 -0.29 16 8 O -0.63 -2.08 8.52 -144.35 -1.23 -3.31 16 9 C 0.07 0.04 5.50 71.98 0.40 0.44 16 10 C 0.05 0.02 6.32 71.98 0.45 0.48 16 11 O -0.40 -2.34 10.27 -135.05 -1.39 -3.72 16 12 C 0.06 -0.03 6.32 71.98 0.45 0.43 16 13 C 0.05 -0.01 5.12 71.98 0.37 0.36 16 14 O -0.33 -2.77 9.97 -88.44 -0.88 -3.65 16 15 C 0.09 0.60 6.69 22.53 0.15 0.75 16 16 C -0.18 0.08 9.04 22.36 0.20 0.29 16 17 C -0.07 0.24 10.04 22.26 0.22 0.47 16 18 C -0.14 0.16 8.66 22.28 0.19 0.36 16 19 C -0.12 -0.54 5.26 -19.84 -0.10 -0.64 16 20 C -0.10 -0.31 2.45 71.23 0.17 -0.14 16 21 O -0.55 -2.62 12.88 -148.98 -1.92 -4.54 16 22 Si 1.01 -1.62 25.49 68.60 1.75 0.13 16 23 H -0.25 0.21 7.11 99.48 0.71 0.92 16 24 H -0.28 -0.62 7.11 99.48 0.71 0.09 16 25 H -0.23 1.17 6.73 99.48 0.67 1.84 16 26 C 0.05 0.53 7.25 22.45 0.16 0.70 16 27 F -0.15 -2.36 16.59 44.97 0.75 -1.61 16 28 H 0.06 -0.06 7.79 -2.39 -0.02 -0.08 16 29 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 0.10 7.97 -2.39 -0.02 0.08 16 31 H 0.06 -0.05 7.79 -2.39 -0.02 -0.07 16 32 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.07 -0.13 7.79 -2.38 -0.02 -0.15 16 34 H 0.05 0.23 7.96 -2.39 -0.02 0.22 16 35 H 0.05 0.15 8.14 -2.39 -0.02 0.14 16 36 H 0.05 0.15 7.79 -2.38 -0.02 0.13 16 37 H 0.07 -0.19 7.48 -2.39 -0.02 -0.21 16 38 H 0.08 -0.16 7.79 -2.39 -0.02 -0.18 16 39 H 0.07 -0.12 7.79 -2.39 -0.02 -0.14 16 40 H 0.06 0.29 7.79 -2.39 -0.02 0.27 16 41 H 0.08 0.07 7.79 -2.39 -0.02 0.05 16 42 H 0.07 0.14 7.48 -2.39 -0.02 0.13 16 43 H 0.09 -0.48 7.21 -2.38 -0.02 -0.49 16 44 H 0.06 0.08 7.21 -2.39 -0.02 0.06 16 45 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 47 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 48 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.11 -0.68 7.66 -2.39 -0.02 -0.70 16 50 H 0.08 -0.10 7.66 -2.39 -0.02 -0.12 16 51 H 0.16 -1.03 6.30 -2.91 -0.02 -1.04 16 52 H 0.17 -1.75 8.06 -2.91 -0.02 -1.77 16 53 H 0.16 -0.94 4.88 -2.91 -0.01 -0.95 16 54 H 0.10 0.52 7.89 -2.39 -0.02 0.50 16 55 H 0.39 -1.43 8.70 -74.06 -0.64 -2.08 16 Total: 0.00 -20.04 442.65 4.88 -15.16 By element: Atomic # 1 Polarization: -5.50 SS G_CDS: 0.93 Total: -4.56 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.29 Total: 5.57 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -5.42 Total: -15.22 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.75 Total: -1.61 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: 2.33 Total: 0.66 kcal Total: -20.04 4.88 -15.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_11948474_16896868.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.454 kcal (2) G-P(sol) polarization free energy of solvation -20.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds