Wall clock time and date at job start Mon Mar 8 2021 09:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86292 * 109.47228 * 2 1 4 4 C 1.50696 * 109.47131 * 120.00472 * 2 1 3 5 5 C 1.38130 * 120.01246 * 254.99671 * 4 2 1 6 6 C 1.38280 * 120.06298 * 179.97438 * 5 4 2 7 7 C 1.38337 * 120.09757 * 359.97438 * 6 5 4 8 8 Br 1.89099 * 119.97858 * 180.02562 * 7 6 5 9 9 C 1.38247 * 120.03983 * 359.97438 * 7 6 5 10 10 C 1.38700 * 119.93336 * 359.78911 * 9 7 6 11 11 O 1.35901 * 120.04875 * 180.25324 * 10 9 7 12 12 C 1.42895 * 117.00423 * 0.21153 * 11 10 9 13 13 C 1.53002 * 109.47625 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.46559 * 304.99842 * 13 12 11 15 15 C 1.52995 * 109.47188 * 64.99459 * 13 12 11 16 16 C 1.52997 * 109.47421 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47217 * 300.00690 * 16 15 13 18 18 H 1.09002 * 109.46920 * 299.99330 * 17 16 15 19 19 O 1.42900 * 109.47071 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47298 * 59.99640 * 17 16 15 21 21 C 1.52990 * 109.47430 * 185.00091 * 13 12 11 22 22 H 0.96700 * 114.00311 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46477 * 240.00110 * 2 1 3 24 24 H 1.48500 * 110.00207 * 180.02562 * 3 2 1 25 25 H 1.48510 * 110.00345 * 301.32145 * 3 2 1 26 26 H 1.07991 * 119.97362 * 0.02562 * 5 4 2 27 27 H 1.07991 * 119.94981 * 179.97438 * 6 5 4 28 28 H 1.08005 * 120.03418 * 180.02562 * 9 7 6 29 29 H 1.09006 * 109.46999 * 299.99804 * 12 11 10 30 30 H 1.08999 * 109.47176 * 59.99575 * 12 11 10 31 31 H 1.09004 * 109.47264 * 300.00915 * 15 13 12 32 32 H 1.09002 * 109.47284 * 60.00184 * 15 13 12 33 33 H 1.08994 * 109.47414 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.46628 * 60.00198 * 16 15 13 35 35 H 0.96698 * 113.99865 * 59.99756 * 19 17 16 36 36 H 1.08999 * 109.47116 * 180.02562 * 20 17 16 37 37 H 1.08992 * 109.47312 * 60.00019 * 20 17 16 38 38 H 1.09003 * 109.47088 * 300.00001 * 21 13 12 39 39 H 1.09006 * 109.47598 * 59.99525 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 2.4536 0.0159 2.2828 6 6 2.9143 -0.6350 3.4125 7 6 2.8530 -2.0147 3.4918 8 35 3.4833 -2.9012 5.0386 9 6 2.3301 -2.7457 2.4413 10 6 1.8631 -2.0941 1.3095 11 8 1.3439 -2.8100 0.2776 12 6 1.3057 -4.2305 0.4279 13 6 0.6938 -4.8599 -0.8253 14 1 -0.2838 -4.4164 -1.0141 15 6 1.6099 -4.6041 -2.0237 16 6 0.9978 -5.2328 -3.2770 17 6 0.8414 -6.7402 -3.0670 18 1 1.8189 -7.1841 -2.8784 19 8 0.2691 -7.3273 -4.2375 20 6 -0.0747 -6.9960 -1.8687 21 6 0.5380 -6.3672 -0.6150 22 1 -0.3934 -0.8834 0.0004 23 1 1.7923 -0.5139 -0.8901 24 1 3.5350 1.7701 -0.0006 25 1 1.5354 2.4772 -1.1921 26 1 2.5014 1.0931 2.2238 27 1 3.3226 -0.0653 4.2341 28 1 2.2819 -3.8229 2.5035 29 1 2.3187 -4.6086 0.5662 30 1 0.7001 -4.4878 1.2969 31 1 1.7210 -3.5301 -2.1734 32 1 2.5876 -5.0475 -1.8348 33 1 1.6506 -5.0509 -4.1306 34 1 0.0203 -4.7889 -3.4657 35 1 0.7975 -7.2039 -5.0379 36 1 -0.1857 -8.0699 -1.7189 37 1 -1.0522 -6.5521 -2.0573 38 1 1.5156 -6.8107 -0.4261 39 1 -0.1147 -6.5495 0.2388 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_34_12104246_16737256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:50:23 Heat of formation + Delta-G solvation = -109.071606 kcal Electronic energy + Delta-G solvation = -22381.621869 eV Core-core repulsion = 18915.389214 eV Total energy + Delta-G solvation = -3466.232655 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.050 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72391 -40.27926 -38.80205 -37.56438 -36.77267 -33.72687 -32.25033 -31.98220 -31.23240 -30.72243 -27.01373 -26.33876 -24.02005 -23.79172 -22.70421 -22.08503 -21.00350 -19.29714 -18.30439 -18.25047 -17.62334 -17.32916 -16.83615 -16.52442 -15.71693 -15.60282 -15.52600 -15.49987 -14.96064 -14.85722 -14.46367 -14.20956 -13.87854 -13.77270 -13.40866 -13.35918 -13.06040 -12.87992 -12.75539 -12.35874 -12.22401 -12.07999 -11.80930 -11.79752 -11.54772 -11.38838 -11.29870 -11.22904 -11.12010 -10.82079 -10.00561 -9.38833 -4.91014 -0.18815 0.13573 0.49043 1.37470 1.62952 1.87198 1.99767 2.34470 3.05528 3.44117 3.49043 3.49605 3.54947 3.61936 3.83920 3.85935 3.90784 3.96396 3.97513 4.09338 4.17211 4.18657 4.22875 4.29348 4.32064 4.34106 4.43891 4.53940 4.64059 4.78641 4.83024 4.90199 4.93654 5.00176 5.01215 5.01613 5.10883 5.15945 5.27312 5.39578 6.10063 6.55238 6.63169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.071 4.071 3 Si 0.742 3.258 4 C -0.131 4.131 5 C -0.065 4.065 6 C -0.121 4.121 7 C -0.049 4.049 8 Br -0.040 7.040 9 C -0.180 4.180 10 C 0.148 3.852 11 O -0.308 6.308 12 C 0.060 3.940 13 C -0.087 4.087 14 H 0.086 0.914 15 C -0.111 4.111 16 C -0.152 4.152 17 C 0.103 3.897 18 H 0.055 0.945 19 O -0.569 6.569 20 C -0.111 4.111 21 C -0.110 4.110 22 H 0.367 0.633 23 H 0.075 0.925 24 H -0.250 1.250 25 H -0.254 1.254 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.379 0.621 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.180 -0.302 0.769 1.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.339 6.339 2 C -0.180 4.180 3 Si 0.641 3.359 4 C -0.133 4.133 5 C -0.084 4.084 6 C -0.141 4.141 7 C -0.128 4.128 8 Br 0.046 6.954 9 C -0.200 4.200 10 C 0.101 3.899 11 O -0.222 6.222 12 C -0.014 4.014 13 C -0.105 4.105 14 H 0.105 0.895 15 C -0.149 4.149 16 C -0.190 4.190 17 C 0.044 3.956 18 H 0.073 0.927 19 O -0.374 6.374 20 C -0.149 4.149 21 C -0.148 4.148 22 H 0.214 0.786 23 H 0.093 0.907 24 H -0.174 1.174 25 H -0.179 1.179 26 H 0.163 0.837 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.226 0.774 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.429 0.477 1.163 1.903 hybrid contribution 0.411 -1.586 -1.138 1.995 sum 1.839 -1.109 0.025 2.148 Atomic orbital electron populations 1.86736 1.16699 1.33303 1.97128 1.25370 0.84990 1.12894 0.94733 0.93018 0.78749 0.76113 0.88054 1.19859 1.03904 0.90802 0.98700 1.20843 0.96225 0.99546 0.91744 1.21065 1.01543 0.92231 0.99248 1.21626 1.02547 0.94954 0.93711 1.96813 1.86923 1.77962 1.33700 1.21189 1.04584 1.00745 0.93517 1.18656 0.93763 0.90612 0.86860 1.86036 1.77172 1.20170 1.38803 1.23006 1.01425 0.77642 0.99374 1.21234 1.00489 0.95537 0.93264 0.89516 1.21514 0.98351 1.01532 0.93481 1.22278 1.02152 0.96315 0.98258 1.21841 0.96072 0.91703 0.85978 0.92738 1.86521 1.52493 1.79495 1.18934 1.21446 0.99274 1.01729 0.92430 1.21487 1.01957 0.93273 0.98059 0.78558 0.90722 1.17412 1.17866 0.83735 0.84055 0.84236 0.91581 0.91359 0.90881 0.91749 0.91509 0.90874 0.77351 0.90736 0.90867 0.91228 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.82 12.65 -35.23 -0.45 -1.26 16 2 C -0.07 -0.05 2.33 36.00 0.08 0.03 16 3 Si 0.74 -0.14 30.17 -169.99 -5.13 -5.27 16 4 C -0.13 -0.09 5.28 -104.47 -0.55 -0.64 16 5 C -0.07 0.03 8.66 -39.61 -0.34 -0.32 16 6 C -0.12 0.02 9.78 -39.53 -0.39 -0.36 16 7 C -0.05 -0.03 6.22 -39.54 -0.25 -0.28 16 8 Br -0.04 -0.02 33.70 -68.01 -2.29 -2.32 16 9 C -0.18 -0.07 8.78 -39.41 -0.35 -0.41 16 10 C 0.15 0.10 6.61 -39.22 -0.26 -0.16 16 11 O -0.31 0.03 8.55 -19.43 -0.17 -0.14 16 12 C 0.06 -0.12 4.12 37.16 0.15 0.04 16 13 C -0.09 0.18 2.43 -90.63 -0.22 -0.04 16 14 H 0.09 -0.14 8.14 -51.93 -0.42 -0.56 16 15 C -0.11 0.18 5.10 -26.74 -0.14 0.04 16 16 C -0.15 0.20 5.54 -26.73 -0.15 0.05 16 17 C 0.10 -0.07 3.47 -26.73 -0.09 -0.16 16 18 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 19 O -0.57 -0.44 13.32 -35.23 -0.47 -0.90 16 20 C -0.11 0.10 5.57 -26.70 -0.15 -0.05 16 21 C -0.11 0.27 5.21 -26.71 -0.14 0.13 16 22 H 0.37 -0.11 8.56 45.56 0.39 0.28 16 23 H 0.08 0.07 7.84 -51.92 -0.41 -0.34 16 24 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 25 H -0.25 -0.71 7.11 56.52 0.40 -0.30 16 26 H 0.15 -0.42 5.13 -52.49 -0.27 -0.69 16 27 H 0.14 -0.27 8.06 -52.49 -0.42 -0.69 16 28 H 0.14 -0.13 6.30 -52.48 -0.33 -0.46 16 29 H 0.07 -0.15 7.65 -51.93 -0.40 -0.55 16 30 H 0.07 -0.18 7.67 -51.93 -0.40 -0.58 16 31 H 0.07 -0.05 7.82 -51.93 -0.41 -0.46 16 32 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 33 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 34 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.38 -1.13 9.08 45.56 0.41 -0.72 16 36 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 37 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 38 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 39 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 LS Contribution 333.09 15.07 5.02 5.02 Total: 0.00 -5.00 333.09 -11.09 -16.09 By element: Atomic # 1 Polarization: -4.27 SS G_CDS: -4.83 Total: -9.10 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.78 Total: -2.12 kcal Atomic # 8 Polarization: -1.23 SS G_CDS: -1.08 Total: -2.31 kcal Atomic # 14 Polarization: -0.14 SS G_CDS: -5.13 Total: -5.27 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.29 Total: -2.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -5.00 -11.09 -16.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_34_12104246_16737256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.978 kcal (2) G-P(sol) polarization free energy of solvation -5.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds